Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G02044 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 2.5e-66 255.8 175 100.0
Aqoxy4G02036 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 3.4e-39 165.6 89 94.4
Aqoxy4G02045 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 4.3e-26 122.1 88 70.5
MBI18_g37562_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 2.3e-19 99.8 94 52.1
Cpa.g.sc228.6 Carica papaya HOM05D003712 ORTHO05D004368 1.1e-18 97.4 90 53.3
Cfa014527 Carpinus fangiana HOM05D003712 ORTHO05D004368 1.9e-18 96.7 92 52.2
Prupe.3G230700 Prunus persica HOM05D003712 ORTHO05D004368 1.9e-18 96.7 96 50.0
MBI06_g08453_MAGBIO Magnolia biondii HOM05D003712 ORTHO05D004368 7.3e-18 94.7 90 47.8
TAR626G0105 Trochodendron aralioides HOM05D003712 ORTHO05D004368 7.3e-18 94.7 93 44.1
MD17G1084800 Malus domestica HOM05D003712 ORTHO05D004368 1.6e-17 93.6 95 49.5
Haze_06583 Corylus avellana HOM05D003712 ORTHO05D004368 3.6e-17 92.4 94 47.9
TAR626G1156 Trochodendron aralioides HOM05D003712 ORTHO05D004368 4.7e-17 92.0 93 43.0
COL.COLO4_06989 Corchorus olitorius HOM05D003712 ORTHO05D004368 8.1e-17 91.3 92 50.0
Manes.12G082800 Manihot esculenta HOM05D003712 ORTHO05D004368 8.1e-17 91.3 89 47.2
Aqoxy5G01666 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.1e-16 90.9 89 46.1
Thecc.06G200700 Theobroma cacao HOM05D003712 ORTHO05D004368 1.1e-16 90.9 94 45.7
Aqoxy5G01667 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.4e-16 90.5 88 46.6
Prupe.3G230500 Prunus persica HOM05D003712 ORTHO05D004368 1.4e-16 90.5 91 50.5
Gorai.011G141000 Gossypium raimondii HOM05D003712 ORTHO05D004368 1.8e-16 90.1 96 47.9
Gohir.D10G127900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 2.3e-16 89.7 96 47.9
Gohir.A06G127300 Gossypium hirsutum HOM05D003712 ORTHO05D004368 6.8e-16 88.2 92 46.7
Gohir.A10G139000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 6.8e-16 88.2 93 50.5
Gohir.D06G128000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 6.8e-16 88.2 92 45.7
Gorai.010G149700 Gossypium raimondii HOM05D003712 ORTHO05D004368 6.8e-16 88.2 92 45.7
Hma1.2p1_0565F.1_g179590 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 6.8e-16 88.2 90 52.2
Gohir.D10G127800 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.2e-15 87.4 93 49.5
Prupe.3G230900 Prunus persica HOM05D003712 ORTHO05D004368 1.2e-15 87.4 88 48.9
QL01p014092 Quercus lobata HOM05D003712 ORTHO05D004368 1.2e-15 87.4 95 50.5
Haze_13069 Corylus avellana HOM05D003712 ORTHO05D004368 1.5e-15 87.0 91 50.5
Ciclev10003398m.g Citrus clementina HOM05D003712 ORTHO05D004368 2.0e-15 86.7 79 50.6
FAN14G2952 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.0e-15 86.7 86 50.0
FAN14G3502 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.0e-15 86.7 86 50.0
Gohir.A10G138900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 2.0e-15 86.7 96 46.9
CiPaw.10G118000 Carya illinoinensis HOM05D003712 ORTHO05D004368 2.6e-15 86.3 89 47.2
Gorai.011G140900 Gossypium raimondii HOM05D003712 ORTHO05D004368 2.6e-15 86.3 93 48.4
Potri.007G106900 Populus trichocarpa HOM05D003712 ORTHO05D004368 2.6e-15 86.3 87 49.4
Aqoxy4G02041 Aquilegia oxysepala HOM05D003712 ORTHO05D077435 3.4e-15 85.9 109 45.9
FAN14G5484 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.4e-15 85.9 93 48.4
Potri.005G224300 Populus trichocarpa HOM05D003712 ORTHO05D004368 3.4e-15 85.9 89 43.8
Potri.007G117900 Populus trichocarpa HOM05D003712 ORTHO05D004368 3.4e-15 85.9 87 49.4
CANSAT56G2493 Cannabis sativa HOM05D003712 ORTHO05D004368 4.4e-15 85.5 89 43.8
Hma1.2p1_0565F.1_g179580 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 4.4e-15 85.5 91 49.5
Migut.H01521 Erythranthe guttata HOM05D003712 ORTHO05D004368 5.8e-15 85.1 93 47.3
Prupe.4G037900 Prunus persica HOM05D003712 ORTHO05D004368 5.8e-15 85.1 87 49.4
Prupe.3G230400 Prunus persica HOM05D003712 ORTHO05D004368 7.6e-15 84.7 89 50.6
RcHm_v2.0_Chr5g0006151 Rosa chinensis HOM05D003712 ORTHO05D004368 7.6e-15 84.7 92 46.7
FAN16G2577 Fragaria x ananassa HOM05D003712 ORTHO05D004368 9.9e-15 84.3 96 41.7
Ciclev10017864m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.3e-14 84.0 87 44.8
FvH4_6g44501 Fragaria vesca HOM05D003712 ORTHO05D004368 1.3e-14 84.0 92 47.8
FAN02G1220 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.3e-14 84.0 86 50.0
Prupe.3G230600 Prunus persica HOM05D003712 ORTHO05D004368 1.3e-14 84.0 89 49.4
FAN11G0545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.7e-14 83.6 96 41.7
Ciclev10003665m.g Citrus clementina HOM05D003712 ORTHO05D004368 3.7e-14 82.4 80 46.2
FAN16G1684 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.7e-14 82.4 90 44.4
Hma1.2p1_0565F.1_g179610 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 3.7e-14 82.4 93 49.5
Solyc07g054700.3 Solanum lycopersicum HOM05D003712 ORTHO05D004368 3.7e-14 82.4 84 46.4
MD09G1090300 Malus domestica HOM05D003712 ORTHO05D004368 4.9e-14 82.0 85 50.6
Manes.13G034200 Manihot esculenta HOM05D003712 ORTHO05D004368 4.9e-14 82.0 82 48.8
Potri.005G061780 Populus trichocarpa HOM05D003712 ORTHO05D004368 4.9e-14 82.0 86 46.5
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 8.4e-14 81.3 90 47.8
FvH4_3g03882 Fragaria vesca HOM05D003712 ORTHO05D004368 1.1e-13 80.9 86 44.2
Oeu032463.1 Olea europaea HOM05D003712 ORTHO05D004368 1.1e-13 80.9 83 43.4
Potri.007G109600 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.1e-13 80.9 93 44.1
Actinidia24056 Actinidia chinensis HOM05D003712 ORTHO05D004368 2.4e-13 79.7 89 41.6
CiPaw.07G040700 Carya illinoinensis HOM05D003712 ORTHO05D004368 3.2e-13 79.3 88 42.0
FAN21G1388 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.2e-13 79.3 92 42.4
Nitab4.5_0002956g0060 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.2e-13 79.3 87 43.7
Ciclev10033348m.g Citrus clementina HOM05D003712 ORTHO05D004368 4.1e-13 79.0 88 42.0
Dinv13825 Davidia involucrata HOM05D003712 ORTHO05D004368 5.4e-13 78.6 68 54.4
FvH4_3g03881 Fragaria vesca HOM05D003712 ORTHO05D004368 5.4e-13 78.6 91 44.0
COL.COLO4_31595 Corchorus olitorius HOM05D003712 ORTHO05D004368 7.1e-13 78.2 89 42.7
Eucgr.I00207 Eucalyptus grandis HOM05D003712 ORTHO05D004368 7.1e-13 78.2 80 45.0
FAN14G3156 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.1e-13 78.2 90 44.4
RcHm_v2.0_Chr5g0006161 Rosa chinensis HOM05D003712 ORTHO05D004368 1.2e-12 77.4 98 38.8
PGSC0003DMG400042227 Solanum tuberosum HOM05D003712 ORTHO05D004368 1.6e-12 77.0 74 44.6
Oeu032464.1 Olea europaea HOM05D003712 ORTHO05D004368 2.1e-12 76.6 83 41.0
Migut.M00335 Erythranthe guttata HOM05D003712 ORTHO05D004368 2.7e-12 76.3 88 42.0
SalBow7G0868 Salvia bowleyana HOM05D003712 ORTHO05D004368 3.5e-12 75.9 88 44.3
DCAR_008077 Daucus carota HOM05D003712 ORTHO05D004368 6.0e-12 75.1 92 45.7
MBI19_g03250_MAGBIO Magnolia biondii HOM05D000165 ORTHO05D008234 6.0e-12 75.1 58 50.0
ATR0693G124 Amborella trichopoda HOM05D003712 ORTHO05D004368 7.8e-12 74.7 86 39.5
DCAR_008079 Daucus carota HOM05D003712 ORTHO05D004368 7.8e-12 74.7 92 43.5
DCAR_008081 Daucus carota HOM05D003712 ORTHO05D004368 7.8e-12 74.7 92 43.5
Migut.M00339 Erythranthe guttata HOM05D003712 ORTHO05D004368 7.8e-12 74.7 88 42.0
Lsat_1_v5_gn_4_56541 Lactuca sativa HOM05D003712 ORTHO05D004368 7.8e-12 74.7 92 37.0
Nitab4.5_0008774g0010 Nicotiana tabacum HOM05D003712 ORTHO05D004368 7.8e-12 74.7 87 42.5
Migut.M00336 Erythranthe guttata HOM05D003712 ORTHO05D004368 1.0e-11 74.3 76 42.1
Lsat_1_v5_gn_4_56621 Lactuca sativa HOM05D003712 ORTHO05D004368 1.0e-11 74.3 95 43.2
Nitab4.5_0005244g0050 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.0e-11 74.3 84 41.7
Peaxi162Scf00485g00072 Petunia axillaris HOM05D003712 ORTHO05D004368 1.0e-11 74.3 80 45.0
FvH4_6g44841 Fragaria vesca HOM05D003712 ORTHO05D004368 1.3e-11 73.9 59 52.5
HanXRQChr16g0517551 Helianthus annuus HOM05D003712 ORTHO05D004368 1.3e-11 73.9 91 37.4
Lsat_1_v5_gn_4_56721 Lactuca sativa HOM05D003712 ORTHO05D004368 1.3e-11 73.9 95 43.2
Nitab4.5_0002791g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.3e-11 73.9 85 42.4
RcHm_v2.0_Chr2g0161661 Rosa chinensis HOM05D003712 ORTHO05D004368 1.3e-11 73.9 60 51.7
RcHm_v2.0_Chr2g0161721 Rosa chinensis HOM05D003712 ORTHO05D004368 1.3e-11 73.9 60 51.7
FvH4_5g34303 Fragaria vesca HOM05D003712 ORTHO05D004368 2.3e-11 73.2 84 41.7
FAN08G3545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.3e-11 73.2 84 41.7
FAN18G4187 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.3e-11 73.2 84 41.7
FAN25G2638 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.0e-11 72.8 58 53.4
Lsat_1_v5_gn_4_56561 Lactuca sativa HOM05D003712 ORTHO05D004368 3.0e-11 72.8 86 44.2
Nitab4.5_0014858g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.9e-11 72.4 82 42.7
PGSC0003DMG401022401 Solanum tuberosum HOM05D003712 ORTHO05D004368 3.9e-11 72.4 86 40.7
Lsat_1_v5_gn_4_56741 Lactuca sativa HOM05D003712 ORTHO05D004368 5.1e-11 72.0 88 43.2
Oeu006541.1 Olea europaea HOM05D003712 ORTHO05D004368 5.1e-11 72.0 89 39.3
DCAR_004145 Daucus carota HOM05D003712 ORTHO05D004368 6.6e-11 71.6 86 40.7
DCAR_024926 Daucus carota HOM05D003712 ORTHO05D004368 6.6e-11 71.6 81 40.7
Oeu006542.1 Olea europaea HOM05D003712 ORTHO05D004368 6.6e-11 71.6 84 42.9
Lsat_1_v5_gn_4_56681 Lactuca sativa HOM05D003712 ORTHO05D004368 8.6e-11 71.2 91 39.6
FvH4_3g39491 Fragaria vesca HOM05D003712 ORTHO05D004368 1.5e-10 70.5 90 38.9
Peaxi162Scf00089g01522 Petunia axillaris HOM05D003712 ORTHO05D004368 1.5e-10 70.5 80 43.8
Sed0020030 Sechium edule HOM05D003712 ORTHO05D004368 1.5e-10 70.5 85 40.0
Sed0026588 Sechium edule HOM05D003712 ORTHO05D004368 1.5e-10 70.5 81 40.7
DCAR_004146 Daucus carota HOM05D003712 ORTHO05D004368 1.9e-10 70.1 81 45.7
FvH4_5g02870 Fragaria vesca HOM05D003712 ORTHO05D004368 1.9e-10 70.1 93 40.9
SalBow8G4951 Salvia bowleyana HOM05D003712 ORTHO05D004368 1.9e-10 70.1 91 36.3
FvH4_6g24132 Fragaria vesca HOM05D003712 ORTHO05D004368 2.5e-10 69.7 58 46.6
Lsat_1_v5_gn_4_69400 Lactuca sativa HOM05D003712 ORTHO05D004368 2.5e-10 69.7 80 42.5
DCAR_004147 Daucus carota HOM05D003712 ORTHO05D004368 3.3e-10 69.3 98 39.8
FvH4_3g39481 Fragaria vesca HOM05D003712 ORTHO05D004368 3.3e-10 69.3 91 41.8
FAN11G3078 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.3e-10 69.3 97 40.2
Prupe.1G064500 Prunus persica HOM05D003712 ORTHO05D004368 3.3e-10 69.3 60 50.0
FAN21G1030 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.3e-10 68.9 90 38.9
Potri.002G038350 Populus trichocarpa HOM05D003712 ORTHO05D004368 4.3e-10 68.9 78 39.7
FAN25G3769 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.3e-10 68.2 90 37.8
HanXRQChr05g0131191 Helianthus annuus HOM05D003712 ORTHO05D004368 7.3e-10 68.2 84 40.5
Nitab4.5_0001871g0120 Nicotiana tabacum HOM05D003712 ORTHO05D004368 7.3e-10 68.2 63 47.6
CsaV3_6G049680 Cucumis sativus L. HOM05D003712 ORTHO05D004368 9.6e-10 67.8 82 45.1
FAN25G1764 Fragaria x ananassa HOM05D003712 ORTHO05D004368 9.6e-10 67.8 122 32.8
Actinidia11811 Actinidia chinensis HOM05D003712 ORTHO05D004368 1.2e-09 67.4 68 44.1
HanXRQChr16g0517561 Helianthus annuus HOM05D003712 ORTHO05D004368 1.2e-09 67.4 85 38.8
Nitab4.5_0008654g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.2e-09 67.4 84 36.9
RcHm_v2.0_Chr7g0234891 Rosa chinensis HOM05D003712 ORTHO05D004368 1.2e-09 67.4 80 41.2
TWI18G1344 Tripterygium wilfordii HOM05D003712 ORTHO05D004368 1.2e-09 67.4 94 37.2
ClCG00G003860 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.6e-09 67.0 92 37.0
ClCG01G022520 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.6e-09 67.0 92 37.0
Glyma.08G058700 Glycine max HOM05D003712 ORTHO05D004368 1.6e-09 67.0 80 42.5
Nitab4.5_0001871g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.6e-09 67.0 86 37.2
Actinidia09903 Actinidia chinensis HOM05D003712 ORTHO05D004368 2.1e-09 66.6 54 44.4
ECA234G4130 Erigeron canadensis HOM05D003712 ORTHO05D004368 2.1e-09 66.6 90 41.1
DCAR_004148 Daucus carota HOM05D003712 ORTHO05D004368 2.8e-09 66.2 49 49.0
FAN18G2182 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.8e-09 66.2 91 38.5
Nitab4.5_0002956g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.8e-09 66.2 86 36.0
CsaV3_6G049690 Cucumis sativus L. HOM05D003712 ORTHO05D004368 3.6e-09 65.9 53 47.2
Eucgr.E03691 Eucalyptus grandis HOM05D003712 ORTHO05D004368 3.6e-09 65.9 85 38.8
FAN14G4046 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.6e-09 65.9 80 38.8
Glyma.07G190500 Glycine max HOM05D003712 ORTHO05D004368 3.6e-09 65.9 79 39.2
Medtr4g091000 Medicago truncatula HOM05D003712 ORTHO05D004368 3.6e-09 65.9 73 42.5
RcHm_v2.0_Chr2g0161751 Rosa chinensis HOM05D003712 ORTHO05D004368 3.6e-09 65.9 79 41.8
Nitab4.5_0000649g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.7e-09 65.5 79 41.8
Phvul.002G222400 Phaseolus vulgaris HOM05D003712 ORTHO05D004368 4.7e-09 65.5 88 43.2
Solyc07g054710.2 Solanum lycopersicum HOM05D003712 ORTHO05D004368 4.7e-09 65.5 89 41.6
Peaxi162Scf00779g00008 Petunia axillaris HOM05D003712 ORTHO05D004368 6.2e-09 65.1 82 41.5
RcHm_v2.0_Chr5g0071201 Rosa chinensis HOM05D003712 ORTHO05D004368 8.1e-09 64.7 85 40.0
FAN02G2973 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.1e-08 64.3 80 37.5
FAN16G2504 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.1e-08 64.3 52 53.8
HanXRQChr15g0488611 Helianthus annuus HOM05D003712 ORTHO05D004368 1.1e-08 64.3 81 33.3
HanXRQChr15g0488621 Helianthus annuus HOM05D003712 ORTHO05D004368 1.1e-08 64.3 81 33.3
Peaxi162Scf00779g00018 Petunia axillaris HOM05D003712 ORTHO05D004368 1.1e-08 64.3 79 41.8
TPR.G32428 Trifolium pratense HOM05D003712 ORTHO05D004368 1.1e-08 64.3 86 39.5
DCAR_012976 Daucus carota HOM05D003712 ORTHO05D004368 1.4e-08 63.9 54 44.4
Os01g0783000 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 1.4e-08 63.9 50 54.0
arahy.Tifrunner.gnm1.ann1.UHMW3K Arachis hypogaea HOM05D003712 ORTHO05D004368 1.8e-08 63.5 85 38.8
ClCG00G003850 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.8e-08 63.5 54 44.4
ClCG01G022510 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.8e-08 63.5 54 44.4
DCAR_028776 Daucus carota HOM05D003712 ORTHO05D004368 1.8e-08 63.5 79 36.7
ECA236G2370 Erigeron canadensis HOM05D003712 ORTHO05D004368 1.8e-08 63.5 54 48.1
FAN18G0797 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.8e-08 63.5 90 38.9
FvH4_6g44545 Fragaria vesca HOM05D003712 ORTHO05D004368 2.4e-08 63.2 80 40.0
SalBow7G4100 Salvia bowleyana HOM05D003712 ORTHO05D004368 2.4e-08 63.2 84 38.1
TPR.G32437 Trifolium pratense HOM05D003712 ORTHO05D004368 2.4e-08 63.2 82 39.0
TPR.G22155 Trifolium pratense HOM05D003712 ORTHO05D004368 3.1e-08 62.8 89 40.4
FvH4_6g44490 Fragaria vesca HOM05D003712 ORTHO05D004368 5.2e-08 62.0 43 55.8
Nitab4.5_0004216g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 5.2e-08 62.0 80 38.8
FvH4_5g34304 Fragaria vesca HOM05D003712 ORTHO05D004368 1.2e-07 60.8 85 40.0
FAN08G0703 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.2e-07 60.8 85 38.8
MBI18_g37563_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.2e-07 60.8 51 52.9
Nitab4.5_0005389g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.2e-07 60.8 85 38.8
Lj4g0026887 Lotus japonicus HOM05D003712 ORTHO05D004368 3.4e-07 59.3 82 39.0
Medtr4g091010 Medicago truncatula HOM05D003712 ORTHO05D004368 3.4e-07 59.3 84 36.9
Zm00001eb369810 Zea mays HOM05D003712 ORTHO05D004368 3.4e-07 59.3 46 54.3
Medtr4g091020 Medicago truncatula HOM05D003712 ORTHO05D004368 7.6e-07 58.2 86 37.2
FAN09G2580 Fragaria x ananassa HOM05D003712 ORTHO05D004368 9.9e-07 57.8 84 34.5
Lj4g0012776 Lotus japonicus HOM05D003712 ORTHO05D004368 3.8e-06 55.8 41 53.7


User provided reference genes

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