Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G01951 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 1.8e-47 192.2 93 100.0
Aqoxy4G01946 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 4.7e-32 141.0 73 93.2
Aqoxy7G03926 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 1.4e-28 129.4 73 86.3
Ciclev10008203m.g Citrus clementina HOM05D005294 ORTHO05D006720 1.5e-17 92.8 72 62.5
Prupe.7G214700 Prunus persica HOM05D005294 ORTHO05D006720 4.7e-16 87.8 69 60.9
Atru.chr7.1522 Acer truncatum HOM05D005294 ORTHO05D006720 6.2e-16 87.4 72 59.7
QL02p063470 Quercus lobata HOM05D005294 ORTHO05D006720 6.2e-16 87.4 72 58.3
CANSAT64G1758 Cannabis sativa HOM05D005294 ORTHO05D006720 1.1e-15 86.7 72 59.7
Lalb_Chr15g0084501 Lupinus albus HOM05D005294 ORTHO05D006720 1.4e-15 86.3 69 60.9
MBI04_g06995_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 1.8e-15 85.9 71 59.2
Lalb_Chr18g0053011 Lupinus albus HOM05D005294 ORTHO05D006720 3.1e-15 85.1 69 58.0
Manes.16G105100 Manihot esculenta HOM05D005294 ORTHO05D006720 3.1e-15 85.1 72 58.3
PSO210G1233 Papaver somniferum HOM05D005294 ORTHO05D006720 3.1e-15 85.1 78 53.8
PSO210G3043 Papaver somniferum HOM05D005294 ORTHO05D006720 4.0e-15 84.7 78 53.8
Cpa.g.sc32.101 Carica papaya HOM05D005294 ORTHO05D006720 5.2e-15 84.3 72 58.3
MBI14_g43979_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 5.2e-15 84.3 71 57.7
TAR624G1381 Trochodendron aralioides HOM05D005294 ORTHO05D006720 5.2e-15 84.3 69 60.9
LjContig00141g0021499 Lotus japonicus HOM05D005294 ORTHO05D006720 6.8e-15 84.0 69 58.0
Dinv36732 Davidia involucrata HOM05D005294 ORTHO05D006720 8.9e-15 83.6 77 55.8
TWI63G0491 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 1.2e-14 83.2 72 55.6
Duzib168G2227 Durio zibethinus HOM05D005294 ORTHO05D006720 1.5e-14 82.8 69 59.4
Sabra13G0059500 Salix brachista HOM05D005294 ORTHO05D006720 2.0e-14 82.4 69 56.5
Actinidia39748 Actinidia chinensis HOM05D005294 ORTHO05D006720 2.6e-14 82.0 72 56.9
CiPaw.03G219800 Carya illinoinensis HOM05D005294 ORTHO05D006720 3.4e-14 81.6 69 56.5
VMungo0647G0234 Vigna mungo HOM05D005294 ORTHO05D006720 7.6e-14 80.5 69 56.5
AL8G32570 Arabidopsis lyrata HOM05D005294 ORTHO05D006720 9.9e-14 80.1 72 58.3
AT5G56740 Arabidopsis thaliana HOM05D005294 ORTHO05D006720 9.9e-14 80.1 72 58.3
CAN.G142.7 Capsicum annuum HOM05D005294 ORTHO05D006720 9.9e-14 80.1 80 50.0
TPR.G25848 Trifolium pratense HOM05D005294 ORTHO05D006720 9.9e-14 80.1 69 53.6
Haze_25869 Corylus avellana HOM05D005294 ORTHO05D006720 1.3e-13 79.7 69 56.5
PGR102G3363 Punica granatum HOM05D005294 ORTHO05D006720 1.3e-13 79.7 69 50.7
Aa31LG3G12690 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.7e-13 79.3 69 62.3
AUR62008827 Chenopodium quinoa HOM05D005294 ORTHO05D006720 1.7e-13 79.3 69 53.6
Glyma.14G065800 Glycine max HOM05D005294 ORTHO05D006720 1.7e-13 79.3 69 58.0
Nitab4.5_0001492g0020 Nicotiana tabacum HOM05D005294 ORTHO05D006720 1.7e-13 79.3 72 52.8
Nitab4.5_0004011g0060 Nicotiana tabacum HOM05D005294 ORTHO05D006720 1.7e-13 79.3 80 50.0
Potri.013G068200 Populus trichocarpa HOM05D005294 ORTHO05D006720 1.7e-13 79.3 69 55.1
Carub.0008s1722 Capsella rubella HOM05D005294 ORTHO05D006720 2.2e-13 79.0 72 58.3
AUR62025414 Chenopodium quinoa HOM05D005294 ORTHO05D006720 2.2e-13 79.0 69 53.6
Sopen02g017740 Solanum pennellii HOM05D005294 ORTHO05D006720 2.2e-13 79.0 68 52.9
TWI34G0876 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 2.2e-13 79.0 69 56.5
THA.LOC104811733 Tarenaya hassleriana HOM05D005294 ORTHO05D006720 2.9e-13 78.6 72 56.9
Thecc.09G094300 Theobroma cacao HOM05D005294 ORTHO05D006720 2.9e-13 78.6 66 57.6
Aa31LG3G12580 Aethionema arabicum HOM05D005294 ORTHO05D006720 3.8e-13 78.2 63 63.5
Aa31LG3G12620 Aethionema arabicum HOM05D005294 ORTHO05D006720 3.8e-13 78.2 63 63.5
Aa31sc2040G10 Aethionema arabicum HOM05D005294 ORTHO05D006720 3.8e-13 78.2 63 63.5
BcaB01g04417 Brassica carinata HOM05D005294 ORTHO05D006720 3.8e-13 78.2 72 56.9
BraA03t10634Z Brassica rapa HOM05D005294 ORTHO05D006720 3.8e-13 78.2 72 56.9
Gohir.A06G070500 Gossypium hirsutum HOM05D005294 ORTHO05D006720 3.8e-13 78.2 66 59.1
Gohir.D06G069100 Gossypium hirsutum HOM05D005294 ORTHO05D006720 4.9e-13 77.8 66 57.6
Gorai.010G080700 Gossypium raimondii HOM05D005294 ORTHO05D006720 4.9e-13 77.8 66 57.6
Lj7C671G8 Lonicera japonica HOM05D005294 ORTHO05D006720 4.9e-13 77.8 72 52.8
Cfa003134 Carpinus fangiana HOM05D005294 ORTHO05D006720 6.4e-13 77.4 69 55.1
COL.COLO4_18242 Corchorus olitorius HOM05D005294 ORTHO05D006720 6.4e-13 77.4 66 57.6
PGSC0003DMG400033362 Solanum tuberosum HOM05D005294 ORTHO05D006720 6.4e-13 77.4 68 54.4
BcaB08g36064 Brassica carinata HOM05D005294 ORTHO05D006720 8.4e-13 77.0 72 55.6
BcaC01g06444 Brassica carinata HOM05D005294 ORTHO05D006720 8.4e-13 77.0 72 55.6
A03p13220 Brassica napus HOM05D005294 ORTHO05D006720 8.4e-13 77.0 72 55.6
CSS0004577 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 8.4e-13 77.0 69 58.0
CSS0007070 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 8.4e-13 77.0 69 58.0
Cc06_g10960 Coffea canephora HOM05D005294 ORTHO05D006720 8.4e-13 77.0 80 48.8
Medtr5g080780 Medicago truncatula HOM05D005294 ORTHO05D006720 8.4e-13 77.0 69 52.2
Rhsim05G0031400 Rhododendron simsii HOM05D005294 ORTHO05D006720 8.4e-13 77.0 72 55.6
Phvul.008G230500 Phaseolus vulgaris HOM05D005294 ORTHO05D006720 1.1e-12 76.6 66 53.0
CARHR270490 Cardamine hirsuta HOM05D005294 ORTHO05D006720 1.4e-12 76.3 72 56.9
Glyma.02G250900 Glycine max HOM05D005294 ORTHO05D006720 1.4e-12 76.3 69 56.5
Solyc02g068580.1 Solanum lycopersicum HOM05D005294 ORTHO05D006720 1.4e-12 76.3 68 50.0
vmacro10822 Vaccinium macrocarpon HOM05D005294 ORTHO05D006720 1.4e-12 76.3 72 54.2
C03p15490 Brassica napus HOM05D005294 ORTHO05D006720 1.9e-12 75.9 72 54.2
BolC3t13987H Brassica oleracea HOM05D005294 ORTHO05D006720 1.9e-12 75.9 72 54.2
BraA10t43499Z Brassica rapa HOM05D005294 ORTHO05D006720 1.9e-12 75.9 72 55.6
Migut.J00438 Erythranthe guttata HOM05D005294 ORTHO05D006720 1.9e-12 75.9 80 46.2
EL10Ac7g17721 Beta vulgaris HOM05D005294 ORTHO05D006720 2.4e-12 75.5 66 54.5
Eucgr.C03688 Eucalyptus grandis HOM05D005294 ORTHO05D006720 2.4e-12 75.5 72 47.2
Thhalv10013465m.g Eutrema salsugineum HOM05D005294 ORTHO05D006720 2.4e-12 75.5 72 56.9
MD02G1072700 Malus domestica HOM05D005294 ORTHO05D006720 2.4e-12 75.5 70 51.4
Hund05510 Selenicereus undatus HOM05D005294 ORTHO05D006720 2.4e-12 75.5 69 53.6
DCAR_012006 Daucus carota HOM05D005294 ORTHO05D006720 3.2e-12 75.1 72 51.4
MD15G1202500 Malus domestica HOM05D005294 ORTHO05D006720 4.2e-12 74.7 66 53.0
arahy.Tifrunner.gnm1.ann1.CWN4E9 Arachis hypogaea HOM05D005294 ORTHO05D006720 5.4e-12 74.3 66 54.5
arahy.Tifrunner.gnm1.ann1.T94LMP Arachis hypogaea HOM05D005294 ORTHO05D006720 5.4e-12 74.3 66 54.5
GSVIVG01015248001 Vitis vinifera HOM05D005294 ORTHO05D006720 5.4e-12 74.3 65 53.8
A10p14080 Brassica napus HOM05D005294 ORTHO05D006720 7.1e-12 73.9 72 54.2
Lsat_1_v5_gn_5_146040 Lactuca sativa HOM05D005294 ORTHO05D006720 9.3e-12 73.6 66 51.5
Psat2g038680 Pisum sativum HOM05D005294 ORTHO05D006720 9.3e-12 73.6 66 51.5
Sc08g0008210 Simmondsia chinensis HOM05D005294 ORTHO05D006720 1.6e-11 72.8 72 48.6
Zm00001eb310550 Zea mays HOM05D005294 ORTHO05D006720 1.6e-11 72.8 69 52.2
Actinidia25279 Actinidia chinensis HOM05D005294 ORTHO05D006720 2.7e-11 72.0 67 52.2
Ca_05904_v3 Cicer arietinum L. HOM05D005294 ORTHO05D006720 2.7e-11 72.0 65 55.4
BcaC04g20057 Brassica carinata HOM05D005294 ORTHO05D006720 3.5e-11 71.6 72 52.8
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 3.5e-11 71.6 72 52.8
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 3.5e-11 71.6 72 52.8
Os09g0347800 Oryza sativa ssp. japonica HOM05D005294 ORTHO05D006720 6.0e-11 70.9 69 52.2
RcHm_v2.0_Chr2g0092581 Rosa chinensis HOM05D005294 ORTHO05D006720 6.0e-11 70.9 93 43.0
SGA_v2.0_scaffold10G05199 Striga asiatica HOM05D005294 ORTHO05D006720 6.0e-11 70.9 71 52.1
MSTRG.19532 Avicennia marina HOM05D005294 ORTHO05D006720 7.8e-11 70.5 72 47.2
HPP92_009085 Vanilla planifolia HOM05D005294 ORTHO05D006720 1.0e-10 70.1 66 53.0
CDE09G1011 Ceratophyllum demersum HOM05D005294 ORTHO05D006720 1.3e-10 69.7 69 53.6
Sp6g18490 Schrenkiella parvula HOM05D005294 ORTHO05D006720 1.3e-10 69.7 72 54.2
Haze_25870 Corylus avellana HOM05D005294 ORTHO05D006720 1.7e-10 69.3 69 50.7
Oeu052126.1 Olea europaea HOM05D005294 ORTHO05D006720 1.7e-10 69.3 68 52.9
ECA234G1346 Erigeron canadensis HOM05D005294 ORTHO05D006720 2.3e-10 68.9 69 49.3
HanXRQChr12g0355321 Helianthus annuus HOM05D005294 ORTHO05D006720 3.0e-10 68.6 66 48.5
FAN19G0312 Fragaria x ananassa HOM05D005294 ORTHO05D006720 5.1e-10 67.8 66 50.0
Peaxi162Scf01468g00004 Petunia axillaris HOM05D005294 ORTHO05D006720 6.6e-10 67.4 72 48.6
SGA_v2.0_scaffold62G21576 Striga asiatica HOM05D005294 ORTHO05D006720 6.6e-10 67.4 69 44.9
Ah.15g091540 Amaranthus hybridus HOM05D005294 ORTHO05D006720 1.1e-09 66.6 69 44.9
FvH4_1g06810 Fragaria vesca HOM05D005294 ORTHO05D006720 1.5e-09 66.2 66 48.5
FAN26G0700 Fragaria x ananassa HOM05D005294 ORTHO05D006720 1.5e-09 66.2 66 48.5
FAN26G2354 Fragaria x ananassa HOM05D005294 ORTHO05D006720 1.5e-09 66.2 66 48.5
FAN23G1873 Fragaria x ananassa HOM05D005294 ORTHO05D006720 1.9e-09 65.9 66 48.5
ClCG11G001870 Citrullus lanatus HOM05D005294 ORTHO05D006720 2.8e-08 62.0 65 49.2
MELO3C004615.2 Cucumis melo HOM05D005294 ORTHO05D006720 2.8e-08 62.0 63 50.8
CsaV3_2G001600 Cucumis sativus L. HOM05D005294 ORTHO05D006720 2.8e-08 62.0 63 52.4
Sed0020374 Sechium edule HOM05D005294 ORTHO05D006720 3.6e-08 61.6 65 49.2
SHI02790 Sapria himalayana HOM05D005294 ORTHO05D006720 2.6e-06 55.5 62 43.5
ATR0705G179 Amborella trichopoda HOM05D005294 ORTHO05D006720 5.8e-06 54.3 63 41.3


User provided reference genes

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