Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G01839 Aquilegia oxysepala HOM05D004639 ORTHO05D005201 3.0e-268 927.9 467 100.0
TAR376G0371 Trochodendron aralioides HOM05D004639 ORTHO05D005201 1.4e-68 264.6 249 54.6
MD00G1164900 Malus domestica HOM05D004639 ORTHO05D005201 1.9e-68 264.2 266 54.1
THA.LOC104805811 Tarenaya hassleriana HOM05D004639 ORTHO05D005201 3.2e-68 263.5 174 69.0
Prupe.4G286600 Prunus persica HOM05D004639 ORTHO05D005201 3.0e-66 256.9 260 55.0
Cpa.g.sc15.68 Carica papaya HOM05D004639 ORTHO05D005201 1.9e-65 254.2 223 60.5
Lj2g0020909 Lotus japonicus HOM05D004639 ORTHO05D005201 1.6e-64 251.1 342 44.7
Carub.0003s0750 Capsella rubella HOM05D004639 ORTHO05D005201 6.2e-64 249.2 167 68.9
Ciclev10028470m.g Citrus clementina HOM05D004639 ORTHO05D005201 3.1e-63 246.9 156 72.4
QL01p053168 Quercus lobata HOM05D004639 ORTHO05D005201 1.2e-62 245.0 275 49.8
QL01p053770 Quercus lobata HOM05D004639 ORTHO05D005201 1.5e-62 244.6 270 50.4
Actinidia23035 Actinidia chinensis HOM05D004639 ORTHO05D005201 2.0e-62 244.2 266 50.8
AL3G19300 Arabidopsis lyrata HOM05D004639 ORTHO05D005201 3.4e-62 243.4 166 68.7
Phvul.L000400 Phaseolus vulgaris HOM05D004639 ORTHO05D005201 3.4e-62 243.4 152 72.4
Sp3g06840 Schrenkiella parvula HOM05D004639 ORTHO05D005201 7.6e-62 242.3 167 67.7
Thecc.04G056700 Theobroma cacao HOM05D004639 ORTHO05D005201 7.6e-62 242.3 240 54.2
Oeu061992.1 Olea europaea HOM05D004639 ORTHO05D005201 9.9e-62 241.9 279 48.4
Glyma.13G009500 Glycine max HOM05D004639 ORTHO05D005201 1.3e-61 241.5 246 52.0
Hma1.2p1_1077F.1_g254710 Hydrangea macrophylla HOM05D004639 ORTHO05D005201 1.3e-61 241.5 169 68.6
Aa31LG5G18470 Aethionema arabicum HOM05D004639 ORTHO05D005201 1.7e-61 241.1 167 68.9
Thhalv10020704m.g Eutrema salsugineum HOM05D004639 ORTHO05D005201 2.2e-61 240.7 165 67.9
Manes.18G143900 Manihot esculenta HOM05D004639 ORTHO05D005201 6.4e-61 239.2 153 71.2
Dinv01634 Davidia involucrata HOM05D004639 ORTHO05D005201 1.1e-60 238.4 176 63.6
Nitab4.5_0010824g0010 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.4e-60 238.0 246 50.8
FvH4_1g27870 Fragaria vesca HOM05D004639 ORTHO05D005201 3.2e-60 236.9 244 50.0
FAN26G1776 Fragaria x ananassa HOM05D004639 ORTHO05D005201 3.2e-60 236.9 244 50.0
FAN19G3130 Fragaria x ananassa HOM05D004639 ORTHO05D005201 4.1e-60 236.5 244 50.0
Gorai.006G008100 Gossypium raimondii HOM05D004639 ORTHO05D005201 5.4e-60 236.1 153 71.9
BcaB04g16901 Brassica carinata HOM05D004639 ORTHO05D005201 7.1e-60 235.7 164 67.1
RcHm_v2.0_Chr3g0497491 Rosa chinensis HOM05D004639 ORTHO05D005201 7.1e-60 235.7 247 50.6
VMungo0540G1855 Vigna mungo HOM05D004639 ORTHO05D005201 9.2e-60 235.3 160 68.1
Rhsim11G0007200 Rhododendron simsii HOM05D004639 ORTHO05D005201 1.2e-59 235.0 265 49.4
arahy.Tifrunner.gnm1.ann1.CP937L Arachis hypogaea HOM05D004639 ORTHO05D005201 1.6e-59 234.6 257 50.2
C07p01740 Brassica napus HOM05D004639 ORTHO05D005201 1.6e-59 234.6 201 58.2
BolC7t40577H Brassica oleracea HOM05D004639 ORTHO05D005201 1.6e-59 234.6 201 58.2
CANSAT64G2852 Cannabis sativa HOM05D004639 ORTHO05D005201 1.6e-59 234.6 153 70.6
GSVIVG01003641001 Vitis vinifera HOM05D004639 ORTHO05D005201 1.6e-59 234.6 376 40.4
BraA07t27872Z Brassica rapa HOM05D004639 ORTHO05D005201 2.1e-59 234.2 181 62.4
A07p00740 Brassica napus HOM05D004639 ORTHO05D005201 2.7e-59 233.8 251 50.2
Gohir.D09G006600 Gossypium hirsutum HOM05D004639 ORTHO05D005201 2.7e-59 233.8 153 71.2
arahy.Tifrunner.gnm1.ann1.GWL1KB Arachis hypogaea HOM05D004639 ORTHO05D005201 3.5e-59 233.4 230 54.8
TWI15G1026 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 3.5e-59 233.4 152 68.4
Nn5g27169 Nelumbo nucifera HOM05D004639 ORTHO05D005201 6.0e-59 232.6 272 49.6
MSTRG.8994 Avicennia marina HOM05D004639 ORTHO05D005201 7.8e-59 232.3 230 52.2
MBI03_g13041_MAGBIO Magnolia biondii HOM05D004639 ORTHO05D005201 7.8e-59 232.3 154 69.5
CANSAT64G1383 Cannabis sativa HOM05D004639 ORTHO05D005201 2.3e-58 230.7 151 69.5
CANSAT64G2443 Cannabis sativa HOM05D004639 ORTHO05D005201 2.3e-58 230.7 151 69.5
Nitab4.5_0001799g0030 Nicotiana tabacum HOM05D004639 ORTHO05D005201 3.9e-58 229.9 250 50.0
Sabra12G0026100 Salix brachista HOM05D004639 ORTHO05D005201 6.6e-58 229.2 177 62.1
TWI31G0951 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 1.1e-57 228.4 152 68.4
PSO493G0020 Papaver somniferum HOM05D004639 ORTHO05D005201 1.9e-57 227.6 280 46.1
SGA_v2.0_scaffold291G47333 Striga asiatica HOM05D004639 ORTHO05D005201 1.9e-57 227.6 165 62.4
DCAR_016067 Daucus carota HOM05D004639 ORTHO05D005201 2.5e-57 227.3 201 55.7
Gohir.A09G007300 Gossypium hirsutum HOM05D004639 ORTHO05D005201 2.5e-57 227.3 304 45.1
PSO384G4518 Papaver somniferum HOM05D004639 ORTHO05D005201 4.3e-57 226.5 280 46.1
Cc00_g06760 Coffea canephora HOM05D004639 ORTHO05D005201 5.6e-57 226.1 230 50.9
Migut.A01100 Erythranthe guttata HOM05D004639 ORTHO05D005201 7.3e-57 225.7 222 53.6
Peaxi162Scf00331g00311 Petunia axillaris HOM05D004639 ORTHO05D005201 7.3e-57 225.7 154 65.6
Potri.012G037700 Populus trichocarpa HOM05D004639 ORTHO05D005201 7.3e-57 225.7 151 66.9
vmacro04281 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 7.3e-57 225.7 154 67.5
vmacro22429 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 7.3e-57 225.7 156 67.3
CAN.G989.2 Capsicum annuum HOM05D004639 ORTHO05D005201 1.2e-56 224.9 175 58.9
Solyc02g021100.3 Solanum lycopersicum HOM05D004639 ORTHO05D005201 1.6e-56 224.6 165 63.0
Sopen02g005400 Solanum pennellii HOM05D004639 ORTHO05D005201 2.1e-56 224.2 165 63.0
Lj2g0022882 Lotus japonicus HOM05D004639 ORTHO05D005201 2.8e-56 223.8 163 66.3
Atru.chr9.65 Acer truncatum HOM05D004639 ORTHO05D005201 1.1e-55 221.9 249 49.8
ATR0068G005 Amborella trichopoda HOM05D004639 ORTHO05D005201 4.0e-55 219.9 198 54.5
Lsat_1_v5_gn_3_140620 Lactuca sativa HOM05D004639 ORTHO05D005201 1.5e-54 218.0 157 60.5
HanXRQChr12g0386021 Helianthus annuus HOM05D004639 ORTHO05D005201 2.0e-54 217.6 140 68.6
ECA234G0087 Erigeron canadensis HOM05D004639 ORTHO05D005201 3.4e-54 216.9 266 44.7
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 5.8e-54 216.1 168 63.1
Sabra19G0060900 Salix brachista HOM05D004639 ORTHO05D005201 7.6e-54 215.7 189 56.1
Sabra19G0061000 Salix brachista HOM05D004639 ORTHO05D005201 7.6e-54 215.7 189 56.1
SabraUnG0000100 Salix brachista HOM05D004639 ORTHO05D005201 7.6e-54 215.7 189 56.1
SabraUnG0000200 Salix brachista HOM05D004639 ORTHO05D005201 7.6e-54 215.7 189 56.1
Potri.014G189400 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.3e-53 214.9 169 58.0
AUR62017756 Chenopodium quinoa HOM05D004639 ORTHO05D005201 1.7e-53 214.5 240 48.3
HanXRQChr16g0532761 Helianthus annuus HOM05D004639 ORTHO05D005201 2.2e-53 214.2 150 63.3
SalBow6G0181 Salvia bowleyana HOM05D004639 ORTHO05D005201 4.9e-53 213.0 315 41.6
PGR031G3121 Punica granatum HOM05D004639 ORTHO05D005201 8.4e-53 212.2 153 61.4
SEGI_27362 Sequoiadendron giganteum HOM05D004639 ORTHO05D005201 1.1e-52 211.8 144 68.1
SalBow6G5700 Salvia bowleyana HOM05D004639 ORTHO05D005201 1.4e-52 211.5 391 36.3
Eucgr.B01580 Eucalyptus grandis HOM05D004639 ORTHO05D005201 2.4e-52 210.7 190 53.7
Potri.014G187300 Populus trichocarpa HOM05D004639 ORTHO05D005201 3.2e-52 210.3 192 53.6
Potri.014G187000 Populus trichocarpa HOM05D004639 ORTHO05D005201 5.4e-52 209.5 192 53.6
Sabra19G0060700 Salix brachista HOM05D004639 ORTHO05D005201 2.1e-51 207.6 147 63.3
Medtr0037s0250 Medicago truncatula HOM05D004639 ORTHO05D005201 7.8e-51 205.7 164 59.1
ECA234G3785 Erigeron canadensis HOM05D004639 ORTHO05D005201 2.3e-50 204.1 278 43.2
MELO3C022885.2 Cucumis melo HOM05D004639 ORTHO05D005201 3.0e-50 203.8 296 39.5
HPP92_007024 Vanilla planifolia HOM05D004639 ORTHO05D005201 3.0e-50 203.8 176 53.4
CiPaw.15G093500 Carya illinoinensis HOM05D004639 ORTHO05D005201 5.1e-50 203.0 243 48.1
ClCG08G005050 Citrullus lanatus HOM05D004639 ORTHO05D005201 1.5e-49 201.4 261 42.9
CsaV3_5G037160 Cucumis sativus L. HOM05D004639 ORTHO05D005201 1.5e-49 201.4 261 42.9
EL10As7g23724 Beta vulgaris HOM05D004639 ORTHO05D005201 6.2e-48 196.1 242 46.7
Medtr0037s0060 Medicago truncatula HOM05D004639 ORTHO05D005201 3.1e-47 193.7 272 42.6
Hund25534 Selenicereus undatus HOM05D004639 ORTHO05D005201 4.0e-47 193.4 245 46.1
HPP92_007076 Vanilla planifolia HOM05D004639 ORTHO05D005201 9.0e-47 192.2 159 56.0
BcaC08g44553 Brassica carinata HOM05D004639 ORTHO05D005201 1.5e-46 191.4 259 45.2
Duzib235G0802 Durio zibethinus HOM05D004639 ORTHO05D005201 1.3e-45 188.3 218 50.5
CDE02G2478 Ceratophyllum demersum HOM05D004639 ORTHO05D005201 1.4e-44 184.9 254 44.5
Sabra19G0060200 Salix brachista HOM05D004639 ORTHO05D005201 3.2e-44 183.7 192 49.5
SHI25031 Sapria himalayana HOM05D004639 ORTHO05D005201 7.1e-44 182.6 147 55.1
Lalb_Chr00c23g0406301 Lupinus albus HOM05D004639 ORTHO05D005201 1.0e-42 178.7 242 44.2
AUR62032895 Chenopodium quinoa HOM05D004639 ORTHO05D005201 1.3e-42 178.3 240 44.6
Lj2g0018447 Lotus japonicus HOM05D004639 ORTHO05D005201 1.3e-42 178.3 158 51.9
Potri.014G187766 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.7e-42 177.9 261 40.2
Nitab4.5_0000843g0080 Nicotiana tabacum HOM05D004639 ORTHO05D005201 2.3e-42 177.6 213 47.4
Mapoly0049s0024 Marchantia polymorpha HOM05D004639 ORTHO05D005201 6.6e-42 176.0 212 43.9
Pp3c15_4380 Physcomitrium patens HOM05D004639 ORTHO05D005201 1.5e-41 174.9 135 58.5
BcaC06g36658 Brassica carinata HOM05D004639 ORTHO05D005201 1.9e-41 174.5 169 53.8
Os09g0101100 Oryza sativa ssp. japonica HOM05D004639 ORTHO05D005201 1.9e-41 174.5 159 51.6
Sc22g0004560 Simmondsia chinensis HOM05D004639 ORTHO05D005201 9.6e-41 172.2 131 61.8
Zm00001eb264110 Zea mays HOM05D004639 ORTHO05D005201 2.4e-39 167.5 202 44.1
unitig_22.g6364 Utricularia gibba HOM05D004639 ORTHO05D005201 4.0e-39 166.8 239 41.8
CBR_g51322 Chara braunii HOM05D004639 ORTHO05D005201 6.9e-39 166.0 139 51.1
Dinv08242 Davidia involucrata HOM05D004639 ORTHO05D005201 2.6e-38 164.1 98 72.4
QL01p052883 Quercus lobata HOM05D011240 ORTHO05D005201 1.7e-37 161.4 108 68.5
CARHR082670 Cardamine hirsuta HOM05D004639 ORTHO05D005201 3.8e-37 160.2 98 74.5
SMO334G0025 Selaginella moellendorffii HOM05D004639 ORTHO05D005201 3.0e-34 150.6 133 49.6
C06p20180 Brassica napus HOM05D004639 ORTHO05D005201 5.1e-34 149.8 164 48.2
BolC6t37199H Brassica oleracea HOM05D004639 ORTHO05D005201 5.1e-34 149.8 164 48.2
TPR.G9531 Trifolium pratense HOM05D004639 ORTHO05D005201 7.4e-33 146.0 98 61.2
Sed0017627 Sechium edule HOM05D004639 ORTHO05D005201 2.6e-30 137.5 152 46.7
Lalb_Chr18g0049251 Lupinus albus HOM05D004639 ORTHO05D005201 2.5e-28 131.0 98 61.2
Lalb_Chr00c55g0413711 Lupinus albus HOM05D004639 ORTHO05D005201 1.2e-27 128.6 97 60.8
PRCOL_00006916 Prasinoderma coloniale HOM05D004639 ORTHO05D005201 6.0e-27 126.3 134 46.3
Cre05.g234250 Chlamydomonas reinhardtii HOM05D004639 ORTHO05D005201 7.9e-27 125.9 164 37.2
HPP92_015991 Vanilla planifolia HOM05D004639 ORTHO05D005201 7.9e-27 125.9 108 52.8
CBR_g37349 Chara braunii HOM05D000004 ORTHO05D000002 4.3e-25 120.2 139 45.3
Sabra19G0060600 Salix brachista HOM05D004639 ORTHO05D005201 8.2e-24 115.9 131 49.6
Gohir.D02G140450 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.1e-23 115.5 101 56.4
COL.COLO4_05916 Corchorus olitorius HOM05D004639 ORTHO05D005201 2.4e-23 114.4 121 49.6
Sabra19G0060300 Salix brachista HOM05D004639 ORTHO05D005201 2.0e-22 111.3 82 59.8
Gorai.005G156200 Gossypium raimondii HOM05D004639 ORTHO05D005201 3.4e-22 110.5 105 53.3
QL93p0107_0438 Quercus lobata HOM05D004639 ORTHO05D005201 2.5e-20 104.4 66 65.2
CSS0047186 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 4.6e-19 100.1 74 60.8
QL02p058806 Quercus lobata HOM05D004639 ORTHO05D005201 3.3e-17 94.0 169 39.6
Haze_08020 Corylus avellana HOM05D004639 ORTHO05D005201 4.3e-17 93.6 70 65.7
QL01p054228 Quercus lobata HOM05D004639 ORTHO05D005201 1.6e-16 91.7 56 75.0
FAN23G0569 Fragaria x ananassa HOM05D004639 ORTHO05D005201 2.4e-15 87.8 95 49.5
TPR.G22982 Trifolium pratense HOM05D004639 ORTHO05D005201 3.1e-15 87.4 78 52.6
CARHR082660 Cardamine hirsuta HOM05D004639 ORTHO05D005201 4.1e-15 87.0 66 63.6
AT3G07930 Arabidopsis thaliana HOM05D004639 ORTHO05D005201 2.0e-14 84.7 67 58.2
Psat1g014800 Pisum sativum HOM05D004639 ORTHO05D005201 2.6e-14 84.3 125 44.0
Aqoxy1G00856 Aquilegia oxysepala HOM05D000538 ORTHO05D000614 3.4e-14 84.0 91 52.7
Aqoxy1G00857 Aquilegia oxysepala HOM05D000538 ORTHO05D000614 6.5e-13 79.7 81 46.9
CSS0021628 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 1.1e-12 79.0 65 60.0
Medtr6g034730 Medicago truncatula HOM05D004639 ORTHO05D005201 1.4e-12 78.6 65 53.8
Aqoxy4G01596 Aquilegia oxysepala HOM05D000538 ORTHO05D000614 3.2e-12 77.4 81 46.9
Medtr6g033105 Medicago truncatula HOM05D004639 ORTHO05D005201 1.0e-10 72.4 161 36.6
unitig_22.g6365 Utricularia gibba HOM05D004639 ORTHO05D005201 2.8e-08 64.3 32 78.1
AagrBONN_evm.TU.Sc2ySwM_228.991 Anthoceros agrestis HOM05D004639 ORTHO05D005201 8.2e-08 62.8 117 36.8
Aqoxy4G01540 Aquilegia oxysepala HOM05D024390 ORTHO05D000614 3.1e-07 60.8 80 45.0
Lalb_Chr18g0049241 Lupinus albus HOM05D004639 ORTHO05D005201 7.7e-06 56.2 155 31.6


User provided reference genes

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