Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G01604 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 5.4e-83 311.2 190 100.0
Aqoxy3G02625 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 6.4e-52 208.0 113 100.0
PSO782G3599 Papaver somniferum HOM05D004600 ORTHO05D005471 3.8e-44 182.2 114 86.8
PSO063G0817 Papaver somniferum HOM05D004600 ORTHO05D005471 1.1e-43 180.6 114 86.0
MD07G1080900 Malus domestica HOM05D004600 ORTHO05D005471 1.4e-43 180.3 117 82.1
QL02p099100 Quercus lobata HOM05D004600 ORTHO05D005471 1.4e-43 180.3 113 85.0
FvH4_7g07840 Fragaria vesca HOM05D004600 ORTHO05D005471 3.2e-43 179.1 115 83.5
FvH4_7g08250 Fragaria vesca HOM05D004600 ORTHO05D005471 3.2e-43 179.1 115 83.5
FAN01G2185 Fragaria x ananassa HOM05D004600 ORTHO05D005471 3.2e-43 179.1 115 83.5
FAN06G4779 Fragaria x ananassa HOM05D004600 ORTHO05D005471 3.2e-43 179.1 115 83.5
Eucgr.E01748 Eucalyptus grandis HOM05D004600 ORTHO05D005471 4.2e-43 178.7 114 84.2
MD02G1232800 Malus domestica HOM05D004600 ORTHO05D005471 1.2e-42 177.2 115 82.6
TAR374G1537 Trochodendron aralioides HOM05D004600 ORTHO05D005471 1.6e-42 176.8 113 83.2
Cfa003694 Carpinus fangiana HOM05D004600 ORTHO05D005471 2.1e-42 176.4 114 82.5
Prupe.2G105900 Prunus persica HOM05D004600 ORTHO05D005471 6.0e-42 174.9 115 80.9
Hund03244 Selenicereus undatus HOM05D004600 ORTHO05D005471 1.0e-41 174.1 113 78.8
RcHm_v2.0_Chr1g0341631 Rosa chinensis HOM05D004600 ORTHO05D005471 1.3e-41 173.7 115 80.9
Hma1.2p1_2581F.1_g324750 Hydrangea macrophylla HOM05D004600 ORTHO05D005471 1.8e-41 173.3 112 83.0
Thecc.05G234100 Theobroma cacao HOM05D004600 ORTHO05D005471 1.8e-41 173.3 114 80.7
GSVIVG01018312001 Vitis vinifera HOM05D004600 ORTHO05D005471 3.0e-41 172.6 114 81.6
Ciclev10033122m.g Citrus clementina HOM05D004600 ORTHO05D005471 5.1e-41 171.8 113 78.8
Actinidia30941 Actinidia chinensis HOM05D004600 ORTHO05D005471 8.7e-41 171.0 112 81.2
CSS0047927 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 8.7e-41 171.0 114 79.8
Gohir.D11G317800 Gossypium hirsutum HOM05D004600 ORTHO05D005471 8.7e-41 171.0 114 78.9
Gorai.007G347600 Gossypium raimondii HOM05D004600 ORTHO05D005471 8.7e-41 171.0 114 78.9
CSS0000756 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 1.1e-40 170.6 114 80.7
PGR042G2124 Punica granatum HOM05D004600 ORTHO05D005471 1.1e-40 170.6 114 80.7
Lalb_Chr10g0107261 Lupinus albus HOM05D004600 ORTHO05D005471 1.5e-40 170.2 114 81.6
Nn6g33746 Nelumbo nucifera HOM05D004600 ORTHO05D005471 1.5e-40 170.2 113 79.6
EL10Ac2g03665 Beta vulgaris HOM05D004600 ORTHO05D005471 1.9e-40 169.9 114 80.7
CiPaw.11G057300 Carya illinoinensis HOM05D004600 ORTHO05D005471 1.9e-40 169.9 114 81.6
Sed0004677 Sechium edule HOM05D004600 ORTHO05D005471 1.9e-40 169.9 112 79.5
Duzib177G1065 Durio zibethinus HOM05D004600 ORTHO05D005471 3.3e-40 169.1 114 78.9
MBI04_g38566_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 3.3e-40 169.1 117 72.6
arahy.Tifrunner.gnm1.ann1.FL4BP3 Arachis hypogaea HOM05D004600 ORTHO05D005471 4.3e-40 168.7 114 80.7
Ca_06414_v3 Cicer arietinum L. HOM05D004600 ORTHO05D005471 4.3e-40 168.7 115 79.1
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 5.6e-40 168.3 113 77.9
arahy.Tifrunner.gnm1.ann1.8V97K8 Arachis hypogaea HOM05D004600 ORTHO05D005471 1.3e-39 167.2 114 79.8
ECA234G0066 Erigeron canadensis HOM05D004600 ORTHO05D005471 1.3e-39 167.2 114 76.3
Oeu011239.1 Olea europaea HOM05D004600 ORTHO05D005471 1.3e-39 167.2 114 78.1
Gohir.A11G302200 Gossypium hirsutum HOM05D004600 ORTHO05D005471 1.6e-39 166.8 114 78.1
MSTRG.28140 Avicennia marina HOM05D004600 ORTHO05D005471 2.8e-39 166.0 120 72.5
Ciclev10017245m.g Citrus clementina HOM05D004600 ORTHO05D005471 2.8e-39 166.0 113 76.1
Phvul.008G274500 Phaseolus vulgaris HOM05D004600 ORTHO05D005471 2.8e-39 166.0 114 78.9
SalBow5G2739 Salvia bowleyana HOM05D004600 ORTHO05D005471 2.8e-39 166.0 114 77.2
SalBow5G4978 Salvia bowleyana HOM05D004600 ORTHO05D005471 2.8e-39 166.0 114 77.2
Actinidia05778 Actinidia chinensis HOM05D000441 ORTHO05D005471 3.7e-39 165.6 107 82.2
Sed0013640 Sechium edule HOM05D004600 ORTHO05D005471 3.7e-39 165.6 112 78.6
Solyc01g068400.3 Solanum lycopersicum HOM05D004600 ORTHO05D005471 3.7e-39 165.6 114 76.3
Sopen01g030360 Solanum pennellii HOM05D004600 ORTHO05D005471 6.2e-39 164.9 114 76.3
ClCG06G000640 Citrullus lanatus HOM05D004600 ORTHO05D005471 8.1e-39 164.5 112 76.8
HanXRQChr06g0175191 Helianthus annuus HOM05D004600 ORTHO05D005471 8.1e-39 164.5 114 74.6
Migut.N01726 Erythranthe guttata HOM05D004600 ORTHO05D005471 1.1e-38 164.1 114 76.3
Glyma.12G219600 Glycine max HOM05D004600 ORTHO05D005471 1.1e-38 164.1 110 80.0
HanXRQChr17g0540501 Helianthus annuus HOM05D004600 ORTHO05D005471 1.1e-38 164.1 114 75.4
TPR.G31719 Trifolium pratense HOM05D004600 ORTHO05D005471 1.4e-38 163.7 115 76.5
Manes.08G156800 Manihot esculenta HOM05D004600 ORTHO05D005471 1.8e-38 163.3 114 77.2
Rhsim07G0038000 Rhododendron simsii HOM05D004600 ORTHO05D005471 1.8e-38 163.3 114 77.2
PGSC0003DMG400017954 Solanum tuberosum HOM05D004600 ORTHO05D005471 1.8e-38 163.3 114 75.4
Cpa.g.sc73.56 Carica papaya HOM05D004600 ORTHO05D005471 2.4e-38 162.9 114 78.9
FAN10G3323 Fragaria x ananassa HOM05D004600 ORTHO05D005471 2.4e-38 162.9 146 65.8
DCAR_002257 Daucus carota HOM05D004600 ORTHO05D005471 3.1e-38 162.5 112 76.8
Glyma.13G281700 Glycine max HOM05D004600 ORTHO05D005471 3.1e-38 162.5 112 77.7
CANSAT56G0524 Cannabis sativa HOM05D004600 ORTHO05D005471 4.0e-38 162.2 111 78.4
CANSAT80G0198 Cannabis sativa HOM05D004600 ORTHO05D005471 4.0e-38 162.2 111 78.4
VMungo0647G0484 Vigna mungo HOM05D004600 ORTHO05D005471 4.0e-38 162.2 114 76.3
CDE02G3136 Ceratophyllum demersum HOM05D004600 ORTHO05D005471 5.3e-38 161.8 113 72.6
THA.LOC104805733 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 5.3e-38 161.8 120 70.0
ATR0594G180 Amborella trichopoda HOM05D004600 ORTHO05D005471 6.9e-38 161.4 113 71.7
AT2G30410 Arabidopsis thaliana HOM05D004600 ORTHO05D005471 6.9e-38 161.4 114 74.6
Carub.0004s1157 Capsella rubella HOM05D004600 ORTHO05D005471 6.9e-38 161.4 114 74.6
TWI32G0106 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 1.2e-37 160.6 112 75.0
Thhalv10017954m.g Eutrema salsugineum HOM05D004600 ORTHO05D005471 1.5e-37 160.2 114 73.7
Lsat_1_v5_gn_3_31540 Lactuca sativa HOM05D004600 ORTHO05D005471 2.0e-37 159.8 114 73.7
Nitab4.5_0006200g0020 Nicotiana tabacum HOM05D004600 ORTHO05D005471 2.0e-37 159.8 114 72.8
CARHR123850 Cardamine hirsuta HOM05D004600 ORTHO05D005471 2.6e-37 159.5 112 74.1
Peaxi162Scf00309g00111 Petunia axillaris HOM05D004600 ORTHO05D005471 2.6e-37 159.5 114 74.6
Potri.013G071100 Populus trichocarpa HOM05D004600 ORTHO05D005471 2.6e-37 159.5 113 74.3
MBI14_g39049_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 3.4e-37 159.1 117 69.2
Manes.09G132900 Manihot esculenta HOM05D004600 ORTHO05D005471 3.4e-37 159.1 112 74.1
THA.LOC104821611 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 3.4e-37 159.1 114 72.8
AUR62010214 Chenopodium quinoa HOM05D004600 ORTHO05D005471 4.5e-37 158.7 114 74.6
AUR62023888 Chenopodium quinoa HOM05D004600 ORTHO05D005471 4.5e-37 158.7 114 74.6
Medtr5g094290 Medicago truncatula HOM05D004600 ORTHO05D005471 5.8e-37 158.3 134 67.2
CAN.G179.37 Capsicum annuum HOM05D004600 ORTHO05D005471 7.6e-37 157.9 114 72.8
Sabra13G0062000 Salix brachista HOM05D004600 ORTHO05D005471 7.6e-37 157.9 113 75.2
TWI34G1465 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 7.6e-37 157.9 112 74.1
Cc10_g08750 Coffea canephora HOM05D004600 ORTHO05D005471 1.0e-36 157.5 108 75.9
CsaV3_6G006410 Cucumis sativus L. HOM05D004600 ORTHO05D005471 1.0e-36 157.5 112 75.0
SpUn0968_0010 Schrenkiella parvula HOM05D004600 ORTHO05D005471 1.0e-36 157.5 115 71.3
HPP92_003331 Vanilla planifolia HOM05D004600 ORTHO05D005471 1.0e-36 157.5 111 73.0
MELO3C022478.2 Cucumis melo HOM05D004600 ORTHO05D005471 1.7e-36 156.8 112 72.3
SalBow2G1105 Salvia bowleyana HOM05D004600 ORTHO05D005471 1.7e-36 156.8 114 73.7
Medtr5g094860 Medicago truncatula HOM05D004600 ORTHO05D005471 2.2e-36 156.4 115 73.9
LjContig00272g0018481 Lotus japonicus HOM05D004600 ORTHO05D005471 1.1e-35 154.1 114 71.9
SEGI_02498 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 1.1e-35 154.1 133 63.2
DCAR_002240 Daucus carota HOM05D000064 ORTHO05D001307 1.4e-35 153.7 105 78.1
AL136U10020 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 1.9e-35 153.3 114 72.8
AL4G25280 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 1.9e-35 153.3 114 72.8
Carub.0004s0600 Capsella rubella HOM05D004600 ORTHO05D005471 4.2e-35 152.1 112 73.2
vmacro13519 Vaccinium macrocarpon HOM05D004600 ORTHO05D005471 1.2e-34 150.6 144 61.1
BcaC02g11135 Brassica carinata HOM05D004600 ORTHO05D005471 1.6e-34 150.2 113 69.9
A05p15020 Brassica napus HOM05D004600 ORTHO05D005471 1.6e-34 150.2 113 69.9
BolC4t23549H Brassica oleracea HOM05D004600 ORTHO05D005471 1.6e-34 150.2 113 69.9
BraA05t20428Z Brassica rapa HOM05D004600 ORTHO05D005471 1.6e-34 150.2 113 69.9
BcaB02g10324 Brassica carinata HOM05D004600 ORTHO05D005471 3.5e-34 149.1 113 69.9
C04p20100 Brassica napus HOM05D004600 ORTHO05D005471 3.5e-34 149.1 113 69.0
Peaxi162Scf00519g00014 Petunia axillaris HOM05D004600 ORTHO05D005471 1.0e-33 147.5 104 75.0
BcaB01g04106 Brassica carinata HOM05D004600 ORTHO05D005471 2.3e-33 146.4 113 68.1
Aa31LG2G2070 Aethionema arabicum HOM05D004600 ORTHO05D005471 3.0e-33 146.0 113 69.0
Nitab4.5_0002801g0010 Nicotiana tabacum HOM05D004600 ORTHO05D005471 5.1e-33 145.2 145 57.2
Haze_15791 Corylus avellana HOM05D004600 ORTHO05D005471 6.7e-33 144.8 80 91.2
SEGI_10368 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 7.4e-32 141.4 113 65.5
Os02g0816500 Oryza sativa ssp. japonica HOM05D004600 ORTHO05D005471 9.6e-32 141.0 84 84.5
Atru.chr2.1648 Acer truncatum HOM05D004600 ORTHO05D005471 8.2e-31 137.9 80 87.5
Duzib106G0868 Durio zibethinus HOM05D004600 ORTHO05D005471 1.4e-30 137.1 78 89.7
Zm00001eb258870 Zea mays HOM05D004600 ORTHO05D005471 1.8e-30 136.7 79 86.1
Aa31LG5G6310 Aethionema arabicum HOM05D004600 ORTHO05D005471 5.3e-30 135.2 77 87.0
unitig_22.g5795 Utricularia gibba HOM05D004600 ORTHO05D005471 5.0e-28 128.6 111 61.3
COL.COLO4_33093 Corchorus olitorius HOM05D004600 ORTHO05D005471 6.5e-28 128.3 91 75.8
Psat2g010800 Pisum sativum HOM05D004600 ORTHO05D005471 2.5e-27 126.3 83 77.1
Psat6g223560 Pisum sativum HOM05D004600 ORTHO05D005471 2.5e-27 126.3 83 77.1
BcaNung06780 Brassica carinata HOM05D004600 ORTHO05D005471 7.2e-27 124.8 99 67.7
arahy.Tifrunner.gnm1.ann1.AN2C62 Arachis hypogaea HOM05D004600 ORTHO05D005471 9.3e-27 124.4 94 75.5
RcHm_v2.0_Chr1g0341741 Rosa chinensis HOM05D004600 ORTHO05D005471 6.7e-25 118.2 65 90.8
COL.COLO4_34174 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.5e-24 117.1 72 84.7
SMO140G0024 Selaginella moellendorffii HOM05D004600 ORTHO05D005471 1.9e-24 116.7 74 78.4
Mapoly0038s0031 Marchantia polymorpha HOM05D004600 ORTHO05D005471 3.3e-24 115.9 107 51.4
PSO017G3083 Papaver somniferum HOM05D004600 ORTHO05D005471 5.7e-24 115.2 122 58.2
RhsimUnG0214300 Rhododendron simsii HOM05D004600 ORTHO05D005471 5.7e-24 115.2 119 52.1
arahy.Tifrunner.gnm1.ann1.TEM6YH Arachis hypogaea HOM05D004600 ORTHO05D005471 7.4e-24 114.8 77 80.5
CBR_g52286 Chara braunii HOM05D004600 ORTHO05D005471 2.2e-20 103.2 104 56.7
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 1.4e-19 100.5 108 52.8
Pp3c8_15900 Physcomitrium patens HOM05D004600 ORTHO05D005471 7.2e-19 98.2 109 47.7
BcaNung05668 Brassica carinata HOM05D004600 ORTHO05D005471 7.9e-18 94.7 76 65.8
arahy.Tifrunner.gnm1.ann1.M3PSJH Arachis hypogaea HOM05D004254 ORTHO05D005184 2.3e-17 93.2 68 75.0
BcaNung05666 Brassica carinata HOM05D004600 ORTHO05D005471 3.0e-17 92.8 76 64.5
MBI18_g40062_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 1.1e-14 84.3 58 75.9
Pp3c5_8620 Physcomitrium patens HOM05D004600 ORTHO05D005471 1.1e-14 84.3 82 50.0
COL.COLO4_33692 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.8e-14 83.6 53 79.2
RcHm_v2.0_Chr1g0341961 Rosa chinensis HOM05D004600 ORTHO05D005471 3.1e-14 82.8 51 84.3
FAN01G1805 Fragaria x ananassa HOM05D004600 ORTHO05D005471 4.1e-14 82.4 56 80.4
Cre16.g670800 Chlamydomonas reinhardtii HOM05D004600 ORTHO05D005471 6.9e-14 81.6 105 43.8
MCO15G208 Micromonas commoda HOM05D004600 ORTHO05D005471 6.9e-14 81.6 105 44.8
RcHm_v2.0_Chr4g0446751 Rosa chinensis HOM05D004600 ORTHO05D005471 9.1e-14 81.3 50 82.0
Pp3c15_6440 Physcomitrium patens HOM05D004600 ORTHO05D005471 1.2e-13 80.9 104 44.2
AUR62013210 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.5e-13 80.5 63 68.3
Sc01g0008330 Simmondsia chinensis HOM05D004600 ORTHO05D005471 2.6e-13 79.7 65 66.2
RcHm_v2.0_Chr3g0457191 Rosa chinensis HOM05D004600 ORTHO05D005471 1.0e-12 77.8 51 78.4
SGA_v2.0_scaffold77G25264 Striga asiatica HOM05D000763 ORTHO05D000599 2.9e-12 76.3 95 49.5
HanXRQChr10g0286821 Helianthus annuus HOM05D004600 ORTHO05D005471 5.0e-12 75.5 43 88.4
Oeu019263.1 Olea europaea HOM05D004600 ORTHO05D005471 1.9e-11 73.6 54 70.4
HanXRQChr02g0044381 Helianthus annuus HOM05D004600 ORTHO05D005471 4.2e-11 72.4 43 83.7
PRCOL_00002235 Prasinoderma coloniale HOM05D004600 ORTHO05D005471 5.5e-11 72.0 86 46.5
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 7.2e-11 71.6 62 58.1
RcHm_v2.0_Chr1g0342531 Rosa chinensis HOM05D004600 ORTHO05D005471 7.2e-11 71.6 43 83.7
Pp3c12_22810 Physcomitrium patens HOM05D004600 ORTHO05D005471 6.7e-09 65.1 59 50.8
A03p17010 Brassica napus HOM05D004600 ORTHO05D005471 9.7e-08 61.2 59 55.9
COL.COLO4_33704 Corchorus olitorius HOM05D004600 ORTHO05D005471 9.7e-08 61.2 59 54.2
C03p20070 Brassica napus HOM05D004600 ORTHO05D005471 1.3e-07 60.8 98 44.9
arahy.Tifrunner.gnm1.ann1.3LH6CZ Arachis hypogaea HOM05D004600 ORTHO05D021519 2.4e-06 56.6 92 43.5
BcaC01g05996 Brassica carinata HOM05D004600 ORTHO05D005471 5.3e-06 55.5 96 42.7


User provided reference genes

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