Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G01397 Aquilegia oxysepala HOM05D001640 ORTHO05D001612 3.2e-174 615.1 346 100.0
Nn1g06744 Nelumbo nucifera HOM05D001640 ORTHO05D001612 1.1e-20 105.1 300 32.0
Aqoxy4G01392 Aquilegia oxysepala HOM05D001640 ORTHO05D001612 2.4e-20 104.0 332 26.8
TAR626G0635 Trochodendron aralioides HOM05D001640 ORTHO05D001612 5.3e-20 102.8 348 30.7
PSO675G3502 Papaver somniferum HOM05D001640 ORTHO05D001612 1.2e-19 101.7 308 31.8
Potri.011G044000 Populus trichocarpa HOM05D001640 ORTHO05D001612 7.4e-14 82.4 300 28.7
Duzib235G0541 Durio zibethinus HOM05D001640 ORTHO05D001612 1.3e-13 81.6 115 40.9
PSO832G1914 Papaver somniferum HOM05D001640 ORTHO05D001612 8.2e-13 79.0 322 27.0
Sabra11G0030500 Salix brachista HOM05D001640 ORTHO05D001612 8.2e-13 79.0 294 28.9
PSO210G0930 Papaver somniferum HOM05D001640 ORTHO05D001612 1.1e-12 78.6 336 25.9
CSS0030521 Camellia sinensis var. sinensis HOM05D001640 ORTHO05D001612 1.4e-12 78.2 166 36.7
TAR627G0733 Trochodendron aralioides HOM05D001640 ORTHO05D001612 1.4e-12 78.2 112 47.3
Nn1g03919 Nelumbo nucifera HOM05D001640 ORTHO05D001612 1.8e-12 77.8 268 28.7
ClCG10G006530 Citrullus lanatus HOM05D001640 ORTHO05D001612 5.3e-12 76.3 88 45.5
PSO832G3211 Papaver somniferum HOM05D001640 ORTHO05D001612 6.9e-12 75.9 328 26.2
Thecc.06G197500 Theobroma cacao HOM05D001640 ORTHO05D001612 6.9e-12 75.9 115 41.7
CDE02G2367 Ceratophyllum demersum HOM05D001640 ORTHO05D001612 1.5e-11 74.7 307 27.0
TAR629G3119 Trochodendron aralioides HOM05D001640 ORTHO05D001612 1.5e-11 74.7 120 42.5
Gohir.A10G020200 Gossypium hirsutum HOM05D001640 ORTHO05D001612 2.6e-11 73.9 116 37.9
Gohir.D05G167700 Gossypium hirsutum HOM05D001640 ORTHO05D001612 2.6e-11 73.9 156 34.6
Manes.16G021700 Manihot esculenta HOM05D001640 ORTHO05D001612 2.6e-11 73.9 296 27.4
CiPaw.11G176400 Carya illinoinensis HOM05D001640 ORTHO05D001612 3.4e-11 73.6 108 39.8
Cfa000364 Carpinus fangiana HOM05D001640 ORTHO05D001612 5.9e-11 72.8 104 43.3
MELO3C016552.2 Cucumis melo HOM05D001640 ORTHO05D001612 5.9e-11 72.8 89 44.9
Gorai.009G172800 Gossypium raimondii HOM05D001640 ORTHO05D001612 7.7e-11 72.4 156 34.6
MBI06_g27494_MAGBIO Magnolia biondii HOM05D001640 ORTHO05D001612 1.3e-10 71.6 75 49.3
Potri.012G037001 Populus trichocarpa HOM05D001640 ORTHO05D001612 1.3e-10 71.6 113 37.2
FvH4_3g04160 Fragaria vesca HOM05D001640 ORTHO05D001612 1.7e-10 71.2 70 52.9
FAN11G1299 Fragaria x ananassa HOM05D001640 ORTHO05D001612 1.7e-10 71.2 70 52.9
Gohir.D10G021000 Gossypium hirsutum HOM05D001640 ORTHO05D001612 1.7e-10 71.2 116 37.1
Gorai.011G022100 Gossypium raimondii HOM05D001640 ORTHO05D001612 1.7e-10 71.2 116 37.1
GSVIVG01006712001 Vitis vinifera HOM05D001640 ORTHO05D001612 1.7e-10 71.2 155 34.8
Dinv40504 Davidia involucrata HOM05D001640 ORTHO05D001612 2.2e-10 70.9 72 51.4
MBI02_g35911_MAGBIO Magnolia biondii HOM05D001640 ORTHO05D001612 2.2e-10 70.9 100 42.0
Nitab4.5_0000297g0100 Nicotiana tabacum HOM05D001640 ORTHO05D001612 2.2e-10 70.9 192 32.8
PSO063G3696 Papaver somniferum HOM05D001640 ORTHO05D001612 2.2e-10 70.9 313 25.9
FAN16G3443 Fragaria x ananassa HOM05D001640 ORTHO05D001612 3.8e-10 70.1 70 52.9
Nitab4.5_0008686g0010 Nicotiana tabacum HOM05D001640 ORTHO05D001612 3.8e-10 70.1 361 25.8
Actinidia01931 Actinidia chinensis HOM05D001640 ORTHO05D001612 5.0e-10 69.7 74 45.9
ClCG11G018460 Citrullus lanatus HOM05D001640 ORTHO05D001612 5.0e-10 69.7 179 33.0
PSO782G0998 Papaver somniferum HOM05D001640 ORTHO05D001612 5.0e-10 69.7 75 44.0
CiPaw.15G093800 Carya illinoinensis HOM05D001640 ORTHO05D001612 6.5e-10 69.3 73 49.3
CsaV3_3G005980 Cucumis sativus L. HOM05D001640 ORTHO05D001612 8.5e-10 68.9 89 42.7
Hma1.2p1_0144F.1_g064810 Hydrangea macrophylla HOM05D001640 ORTHO05D001612 8.5e-10 68.9 298 27.5
MBI03_g13831_MAGBIO Magnolia biondii HOM05D001640 ORTHO05D001612 8.5e-10 68.9 113 37.2
Potri.004G035700 Populus trichocarpa HOM05D001640 ORTHO05D001612 8.5e-10 68.9 77 49.4
Haze_06561 Corylus avellana HOM05D001640 ORTHO05D001612 1.1e-09 68.6 104 42.3
PSO063G6251 Papaver somniferum HOM05D001640 ORTHO05D001612 1.1e-09 68.6 75 44.0
RcHm_v2.0_Chr5g0006611 Rosa chinensis HOM05D001640 ORTHO05D001612 1.1e-09 68.6 70 50.0
Dinv22367 Davidia involucrata HOM05D001640 ORTHO05D001612 1.4e-09 68.2 183 29.0
Lsat_1_v5_gn_7_106460 Lactuca sativa HOM05D001640 ORTHO05D001612 1.4e-09 68.2 73 43.8
TAR371G1285 Trochodendron aralioides HOM05D001640 ORTHO05D001612 1.4e-09 68.2 96 41.7
Manes.17G040000 Manihot esculenta HOM05D001640 ORTHO05D001612 2.5e-09 67.4 299 27.1
Sabra12G0025500 Salix brachista HOM05D001640 ORTHO05D001612 3.2e-09 67.0 114 35.1
Duzib192G0891 Durio zibethinus HOM05D001640 ORTHO05D001612 4.2e-09 66.6 297 26.6
HanXRQChr04g0125161 Helianthus annuus HOM05D001640 ORTHO05D001612 5.5e-09 66.2 105 41.0
Dinv08340 Davidia involucrata HOM05D001640 ORTHO05D001612 7.2e-09 65.9 109 36.7
RcHm_v2.0_Chr5g0035351 Rosa chinensis HOM05D001640 ORTHO05D001612 7.2e-09 65.9 74 45.9
arahy.Tifrunner.gnm1.ann1.DQYB4L Arachis hypogaea HOM05D001640 ORTHO05D001612 1.2e-08 65.1 68 50.0
Haze_18384 Corylus avellana HOM05D001640 ORTHO05D001612 1.2e-08 65.1 72 51.4
Potri.015G028700 Populus trichocarpa HOM05D001640 ORTHO05D001612 1.2e-08 65.1 114 31.6
Sed0006505 Sechium edule HOM05D001640 ORTHO05D001612 1.2e-08 65.1 126 34.1
CDE05G0634 Ceratophyllum demersum HOM05D001640 ORTHO05D001612 1.6e-08 64.7 80 42.5
CAN.G162.103 Capsicum annuum HOM05D001640 ORTHO05D001612 2.1e-08 64.3 115 36.5
Cpa.g.sc27.111 Carica papaya HOM05D001640 ORTHO05D001612 2.1e-08 64.3 298 25.2
Cfa020506 Carpinus fangiana HOM05D001640 ORTHO05D001612 2.1e-08 64.3 127 35.4
Medtr6g080650 Medicago truncatula HOM05D001640 ORTHO05D001612 2.7e-08 63.9 91 38.5
Atru.chr10.1993 Acer truncatum HOM05D001640 ORTHO05D001612 3.6e-08 63.5 107 35.5
FAN25G1770 Fragaria x ananassa HOM05D001640 ORTHO05D001612 3.6e-08 63.5 64 51.6
PGSC0003DMG400019285 Solanum tuberosum HOM05D001640 ORTHO05D001612 3.6e-08 63.5 356 27.0
Aqoxy1G02755 Aquilegia oxysepala HOM05D001640 ORTHO05D001612 4.7e-08 63.2 356 26.1
arahy.Tifrunner.gnm1.ann1.WL96AD Arachis hypogaea HOM05D001640 ORTHO05D001612 6.1e-08 62.8 68 48.5
CARHR051340 Cardamine hirsuta HOM05D001640 ORTHO05D001612 6.1e-08 62.8 339 23.3
Haze_09527 Corylus avellana HOM05D001640 ORTHO05D001612 6.1e-08 62.8 111 35.1
Gohir.A05G164700 Gossypium hirsutum HOM05D001640 ORTHO05D001612 6.1e-08 62.8 327 24.5
Lsat_1_v5_gn_4_57221 Lactuca sativa HOM05D001640 ORTHO05D001612 6.1e-08 62.8 70 45.7
Lj1A852G44 Lonicera japonica HOM05D001640 ORTHO05D001612 6.1e-08 62.8 125 36.0
Manes.03G067600 Manihot esculenta HOM05D001640 ORTHO05D001612 6.1e-08 62.8 73 41.1
THA.LOC104809550 Tarenaya hassleriana HOM05D001640 ORTHO05D001612 6.1e-08 62.8 68 50.0
CDE01G0075 Ceratophyllum demersum HOM05D001640 ORTHO05D001612 7.9e-08 62.4 73 43.8
ClCG03G005570 Citrullus lanatus HOM05D001640 ORTHO05D001612 7.9e-08 62.4 91 40.7
FvH4_3g20920 Fragaria vesca HOM05D001640 ORTHO05D001612 7.9e-08 62.4 67 47.8
FAN11G1051 Fragaria x ananassa HOM05D001640 ORTHO05D001612 7.9e-08 62.4 67 47.8
FAN21G3887 Fragaria x ananassa HOM05D001640 ORTHO05D001612 7.9e-08 62.4 67 47.8
FAN25G0355 Fragaria x ananassa HOM05D001640 ORTHO05D001612 7.9e-08 62.4 67 47.8
AT1G11220 Arabidopsis thaliana HOM05D001640 ORTHO05D001612 1.0e-07 62.0 81 43.2
CiPaw.12G122700 Carya illinoinensis HOM05D001640 ORTHO05D001612 1.0e-07 62.0 86 36.0
Sed0026447 Sechium edule HOM05D001640 ORTHO05D001612 1.0e-07 62.0 133 36.1
Hund21272 Selenicereus undatus HOM05D001640 ORTHO05D001612 1.0e-07 62.0 151 32.5
TAR629G3218 Trochodendron aralioides HOM05D001640 ORTHO05D001612 1.0e-07 62.0 165 30.3
vmacro03829 Vaccinium macrocarpon HOM05D001640 ORTHO05D001612 1.0e-07 62.0 85 43.5
vmacro23296 Vaccinium macrocarpon HOM05D001640 ORTHO05D001612 1.0e-07 62.0 85 43.5
CsaV3_1G011830 Cucumis sativus L. HOM05D001640 ORTHO05D001612 1.4e-07 61.6 91 40.7
ECA236G4769 Erigeron canadensis HOM05D001640 ORTHO05D001612 1.4e-07 61.6 55 52.7
FAN21G3900 Fragaria x ananassa HOM05D001640 ORTHO05D001612 1.4e-07 61.6 64 51.6
Lj1A1212G53 Lonicera japonica HOM05D001640 ORTHO05D001612 1.4e-07 61.6 75 40.0
Atru.chr2.2821 Acer truncatum HOM05D001640 ORTHO05D001612 1.8e-07 61.2 98 35.7
Cfa017826 Carpinus fangiana HOM05D001640 ORTHO05D001612 1.8e-07 61.2 72 47.2
FAN16G1307 Fragaria x ananassa HOM05D001640 ORTHO05D001612 1.8e-07 61.2 67 47.8
Ah.06g183580 Amaranthus hybridus HOM05D001640 ORTHO05D001612 2.3e-07 60.8 180 31.1
ATR0618G424 Amborella trichopoda HOM05D001640 ORTHO05D001612 2.3e-07 60.8 93 40.9
ATR0693G217 Amborella trichopoda HOM05D001640 ORTHO05D001612 2.3e-07 60.8 74 43.2
Lsat_1_v5_gn_1_124741 Lactuca sativa HOM05D001640 ORTHO05D001612 2.3e-07 60.8 72 43.1
Psat1g121240 Pisum sativum HOM05D001640 ORTHO05D001612 2.3e-07 60.8 70 47.1
SalBow8G5059 Salvia bowleyana HOM05D001640 ORTHO05D001612 2.3e-07 60.8 88 44.3
Solyc07g063560.4 Solanum lycopersicum HOM05D001640 ORTHO05D001612 2.3e-07 60.8 353 26.6
TPR.G19885 Trifolium pratense HOM05D001640 ORTHO05D001612 2.3e-07 60.8 70 45.7
TPR.G24074 Trifolium pratense HOM05D001640 ORTHO05D001612 2.3e-07 60.8 70 45.7
PGR042G0663 Punica granatum HOM05D001640 ORTHO05D001612 3.0e-07 60.5 95 37.9
QL01p016244 Quercus lobata HOM05D000493 ORTHO05D001638 3.0e-07 60.5 172 31.4
Sopen07g031740 Solanum pennellii HOM05D001640 ORTHO05D001612 3.0e-07 60.5 338 25.4
Prupe.4G189800 Prunus persica HOM05D001640 ORTHO05D001612 3.9e-07 60.1 117 34.2
AL1G22250 Arabidopsis lyrata HOM05D001640 ORTHO05D001612 5.1e-07 59.7 86 40.7
MELO3C002560.2 Cucumis melo HOM05D001640 ORTHO05D001612 5.1e-07 59.7 91 39.6
Sabra15G0023900 Salix brachista HOM05D001640 ORTHO05D001612 5.1e-07 59.7 116 33.6
Peaxi162Scf01216g00045 Petunia axillaris HOM05D001640 ORTHO05D001612 6.7e-07 59.3 102 40.2
PGR083G2642 Punica granatum HOM05D001640 ORTHO05D001612 6.7e-07 59.3 113 36.3
Sabra04G0021700 Salix brachista HOM05D001640 ORTHO05D001612 6.7e-07 59.3 68 50.0
Aa31LG2G9360 Aethionema arabicum HOM05D001640 ORTHO05D001612 8.8e-07 58.9 68 47.1
C01p38220 Brassica napus HOM05D001640 ORTHO05D001612 8.8e-07 58.9 121 35.5
CDE05G2037 Ceratophyllum demersum HOM05D001640 ORTHO05D001612 8.8e-07 58.9 63 50.8
Lj2g0021861 Lotus japonicus HOM05D001640 ORTHO05D001612 1.1e-06 58.5 70 45.7
MD03G1219300 Malus domestica HOM05D001640 ORTHO05D001612 1.1e-06 58.5 106 35.8
QL08p018071 Quercus lobata HOM05D001640 ORTHO05D001612 1.1e-06 58.5 161 30.4
MSTRG.7298 Avicennia marina HOM05D001640 ORTHO05D001612 1.5e-06 58.2 192 32.8
AUR62015603 Chenopodium quinoa HOM05D001640 ORTHO05D001612 1.5e-06 58.2 73 38.4
BolC1t03784H Brassica oleracea HOM05D001640 ORTHO05D001612 2.0e-06 57.8 339 25.7
CANSAT11G1358 Cannabis sativa HOM05D001640 ORTHO05D001612 2.0e-06 57.8 54 48.1
AUR62029314 Chenopodium quinoa HOM05D001640 ORTHO05D001612 2.0e-06 57.8 117 31.6
Sc16g0006790 Simmondsia chinensis HOM05D001640 ORTHO05D001612 2.0e-06 57.8 123 30.9
Actinidia39410 Actinidia chinensis HOM05D001640 ORTHO05D001612 2.6e-06 57.4 81 38.3
Migut.M01202 Erythranthe guttata HOM05D001640 ORTHO05D001612 2.6e-06 57.4 70 45.7
Lj2A282T46 Lonicera japonica HOM05D001640 ORTHO05D001612 2.6e-06 57.4 74 37.8
Thecc.07G071500 Theobroma cacao HOM05D001640 ORTHO05D001612 2.6e-06 57.4 73 37.0
MD11G1237400 Malus domestica HOM05D001640 ORTHO05D001612 3.3e-06 57.0 108 36.1
Nn3g18595 Nelumbo nucifera HOM05D001640 ORTHO05D001612 3.3e-06 57.0 120 32.5
SGA_v2.0_scaffold7G03962 Striga asiatica HOM05D001640 ORTHO05D001612 3.3e-06 57.0 319 24.8
VMungo0464G0664 Vigna mungo HOM05D001640 ORTHO05D001612 3.3e-06 57.0 81 42.0
Carub.0001s1081 Capsella rubella HOM05D001640 ORTHO05D001612 4.4e-06 56.6 77 40.3
Eucgr.K02310 Eucalyptus grandis HOM05D001640 ORTHO05D001612 4.4e-06 56.6 79 34.2
Manes.15G083300 Manihot esculenta HOM05D001640 ORTHO05D001612 4.4e-06 56.6 82 40.2
Sed0018118 Sechium edule HOM05D001640 ORTHO05D001612 4.4e-06 56.6 88 38.6
TPR.G2580 Trifolium pratense HOM05D001640 ORTHO05D001612 4.4e-06 56.6 68 42.6
Oeu038226.1 Olea europaea HOM05D001640 ORTHO05D001612 5.7e-06 56.2 86 36.0
Actinidia05587 Actinidia chinensis HOM05D001640 ORTHO05D001612 7.4e-06 55.8 56 42.9
Actinidia09976 Actinidia chinensis HOM05D001640 ORTHO05D001612 7.4e-06 55.8 84 44.0
HanXRQChr17g0569171 Helianthus annuus HOM05D001640 ORTHO05D001612 7.4e-06 55.8 185 29.2
Cpa.g.sc80.113 Carica papaya HOM05D001640 ORTHO05D001612 9.7e-06 55.5 72 36.1


User provided reference genes

Program Settings