Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 2.5e-59 231.9 115 100.0
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 2.0e-32 142.5 77 96.1
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 3.8e-23 111.7 93 60.2
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 4.2e-22 108.2 77 74.0
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 9.3e-22 107.1 73 71.2
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 2.7e-21 105.5 79 69.6
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 6.1e-21 104.4 84 63.1
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 1.8e-20 102.8 73 69.9
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 3.0e-20 102.1 76 67.1
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 6.7e-20 100.9 84 60.7
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 8.7e-20 100.5 85 61.2
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 1.5e-19 99.8 82 61.0
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 1.5e-19 99.8 84 60.7
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 3.3e-19 98.6 77 64.9
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 4.3e-19 98.2 83 60.2
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 4.3e-19 98.2 83 60.2
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 1.6e-18 96.3 77 62.3
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 1.6e-18 96.3 77 61.0
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 3.7e-18 95.1 84 60.7
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 3.7e-18 95.1 85 57.6
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 3.7e-18 95.1 85 57.6
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 4.8e-18 94.7 84 58.3
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 6.3e-18 94.4 77 61.0
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 8.2e-18 94.0 77 63.6
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 8.2e-18 94.0 85 57.6
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 1.1e-17 93.6 76 61.8
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 1.1e-17 93.6 77 59.7
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.8e-17 92.8 84 58.3
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 1.8e-17 92.8 84 58.3
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 4.1e-17 91.7 73 63.0
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 4.1e-17 91.7 80 58.8
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 4.1e-17 91.7 84 57.1
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 4.1e-17 91.7 71 63.4
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 5.3e-17 91.3 73 61.6
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 5.3e-17 91.3 74 60.8
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 5.3e-17 91.3 74 60.8
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 1.2e-16 90.1 77 59.7
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 1.5e-16 89.7 77 59.7
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.5e-16 89.7 84 57.1
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 2.0e-16 89.4 78 62.8
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 5.9e-16 87.8 77 57.1
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 5.9e-16 87.8 95 48.4
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 7.7e-16 87.4 77 57.1
CsaV3_1G010830 Cucumis sativus L. HOM05D005226 ORTHO05D004666 1.0e-15 87.0 80 52.5
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 1.0e-15 87.0 79 55.7
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 1.3e-15 86.7 77 55.8
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.2e-15 85.9 78 55.1
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 2.9e-15 85.5 79 55.7
CiPaw.10G070100 Carya illinoinensis HOM05D005226 ORTHO05D004666 3.8e-15 85.1 87 50.6
MELO3C002462.2 Cucumis melo HOM05D005226 ORTHO05D004666 3.8e-15 85.1 78 52.6
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.8e-15 85.1 75 57.3
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 5.0e-15 84.7 75 54.7
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 6.5e-15 84.3 76 57.9
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 6.5e-15 84.3 70 60.0
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 8.5e-15 84.0 65 67.7
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 8.5e-15 84.0 77 57.1
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 1.1e-14 83.6 77 55.8
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 1.9e-14 82.8 72 62.5
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 1.9e-14 82.8 74 51.4
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 1.9e-14 82.8 74 51.4
Sed0011520 Sechium edule HOM05D005226 ORTHO05D004666 2.5e-14 82.4 78 53.8
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 2.5e-14 82.4 79 51.9
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 2.5e-14 82.4 79 51.9
Oeu051213.1 Olea europaea HOM05D005226 ORTHO05D004666 3.2e-14 82.0 70 61.4
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 4.2e-14 81.6 68 60.3
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 4.2e-14 81.6 68 60.3
PSO210G5560 Papaver somniferum HOM05D005226 ORTHO05D004666 4.2e-14 81.6 95 45.3
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 5.5e-14 81.3 81 56.8
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 5.5e-14 81.3 77 55.8
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 7.2e-14 80.9 89 46.1
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 9.4e-14 80.5 76 53.9
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 9.4e-14 80.5 78 51.3
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.2e-13 80.1 77 53.2
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 1.2e-13 80.1 77 53.2
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 1.6e-13 79.7 76 60.5
Oeu033894.1 Olea europaea HOM05D005226 ORTHO05D004666 1.6e-13 79.7 77 51.9
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 2.1e-13 79.3 67 61.2
CAN.G569.14 Capsicum annuum HOM05D005226 ORTHO05D004666 2.7e-13 79.0 73 52.1
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.7e-13 79.0 77 51.9
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 3.6e-13 78.6 67 61.2
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 6.1e-13 77.8 76 57.9
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 6.1e-13 77.8 79 51.9
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 7.9e-13 77.4 69 56.5
Hma1.2p1_1142F.1_g260990 Hydrangea macrophylla HOM05D005226 ORTHO05D004666 7.9e-13 77.4 70 55.7
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 1.0e-12 77.0 83 53.0
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 1.0e-12 77.0 78 56.4
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.4e-12 76.6 67 59.7
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 1.4e-12 76.6 77 50.6
Rhsim02G0109000 Rhododendron simsii HOM05D005226 ORTHO05D004666 1.8e-12 76.3 65 58.5
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 3.9e-12 75.1 74 54.1
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 3.9e-12 75.1 73 56.2
Eucgr.E04071 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.9e-12 75.1 77 50.6
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 5.1e-12 74.7 65 58.5
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 5.1e-12 74.7 77 53.2
Peaxi162Scf00262g00094 Petunia axillaris HOM05D005226 ORTHO05D004666 6.7e-12 74.3 67 53.7
MBI18_g02740_MAGBIO Magnolia biondii HOM05D005226 ORTHO05D004666 1.5e-11 73.2 74 51.4
Glyma.18G063800 Glycine max HOM05D005226 ORTHO05D004666 4.3e-11 71.6 67 56.7
PGR004G1778 Punica granatum HOM05D005226 ORTHO05D004666 4.3e-11 71.6 86 44.2
Medtr3g463740 Medicago truncatula HOM05D005226 ORTHO05D004666 5.7e-11 71.2 65 56.9
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 9.7e-11 70.5 73 53.4
Nitab4.5_0000389g0060 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.3e-10 70.1 67 56.7
TPR.G21187 Trifolium pratense HOM05D005226 ORTHO05D004666 1.7e-10 69.7 67 55.2
ATR0752G088 Amborella trichopoda HOM05D005226 ORTHO05D004666 2.2e-10 69.3 68 47.1
AL1G22790 Arabidopsis lyrata HOM05D005226 ORTHO05D004666 2.8e-10 68.9 76 51.3
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 2.8e-10 68.9 67 55.2
PGSC0003DMG400016491 Solanum tuberosum HOM05D005226 ORTHO05D004666 2.8e-10 68.9 65 52.3
ECA234G1355 Erigeron canadensis HOM05D005226 ORTHO05D004666 3.7e-10 68.6 68 54.4
Carub.0001s1129 Capsella rubella HOM05D005226 ORTHO05D004666 4.8e-10 68.2 76 51.3
Aa31LG1G3110 Aethionema arabicum HOM05D005226 ORTHO05D004666 6.3e-10 67.8 86 44.2
CARHR011960 Cardamine hirsuta HOM05D005226 ORTHO05D004666 8.2e-10 67.4 77 49.4
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 1.1e-09 67.0 68 52.9
SalBow8G4932 Salvia bowleyana HOM05D005226 ORTHO05D004666 1.1e-09 67.0 64 62.5
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 1.4e-09 66.6 77 48.1
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 1.4e-09 66.6 78 50.0
Thhalv10009573m.g Eutrema salsugineum HOM05D005226 ORTHO05D004666 1.8e-09 66.2 77 49.4
HanXRQChr16g0515991 Helianthus annuus HOM05D005226 ORTHO05D004666 1.8e-09 66.2 69 53.6
AT1G11655 Arabidopsis thaliana HOM05D005226 ORTHO05D004666 2.4e-09 65.9 76 50.0
Lsat_1_v5_gn_4_59601 Lactuca sativa HOM05D005226 ORTHO05D004666 2.4e-09 65.9 68 51.5
arahy.Tifrunner.gnm1.ann1.89FC4C Arachis hypogaea HOM05D005226 ORTHO05D004666 3.1e-09 65.5 74 48.6
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 4.1e-09 65.1 64 54.7
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 4.1e-09 65.1 64 54.7
A09p64400 Brassica napus HOM05D005226 ORTHO05D004666 9.1e-09 63.9 78 46.2
BraA09t41784Z Brassica rapa HOM05D005226 ORTHO05D004666 9.1e-09 63.9 78 46.2
Peaxi162Scf00565g00036 Petunia axillaris HOM05D005226 ORTHO05D004666 9.1e-09 63.9 71 52.1
EL10Ac8g20036 Beta vulgaris HOM05D005226 ORTHO05D004666 1.5e-08 63.2 72 47.2
THA.LOC104806304 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 1.5e-08 63.2 84 40.5
BcaC07g41768 Brassica carinata HOM05D005226 ORTHO05D004666 2.0e-08 62.8 77 45.5
C08p48100 Brassica napus HOM05D005226 ORTHO05D004666 2.0e-08 62.8 77 45.5
BcaB08g37410 Brassica carinata HOM05D005226 ORTHO05D004666 2.6e-08 62.4 77 45.5
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 2.6e-08 62.4 64 53.1
C05p09770 Brassica napus HOM05D005226 ORTHO05D004666 4.5e-08 61.6 64 53.1
BcaC07g38677 Brassica carinata HOM05D005226 ORTHO05D004666 5.9e-08 61.2 78 46.2
BolC8t49112H Brassica oleracea HOM05D005226 ORTHO05D004666 5.9e-08 61.2 78 46.2
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 1.7e-07 59.7 80 43.8
C08p14770 Brassica napus HOM05D005226 ORTHO05D004666 2.2e-07 59.3 74 47.3
A08p33360 Brassica napus HOM05D005226 ORTHO05D004666 2.9e-07 58.9 77 45.5
BraA08t35253Z Brassica rapa HOM05D005226 ORTHO05D004666 5.0e-07 58.2 63 55.6
BcaB03g13244 Brassica carinata HOM05D005226 ORTHO05D004666 6.5e-07 57.8 79 40.5
unitig_26.g9388 Utricularia gibba HOM05D005226 ORTHO05D004666 8.5e-07 57.4 75 45.3
Thhalv10029169m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 1.9e-06 56.2 68 39.7
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 1.9e-06 56.2 97 35.1
BcaC09g51183 Brassica carinata HOM05D009543 ORTHO05D004666 2.5e-06 55.8 80 35.0
C01p15970 Brassica napus HOM05D009543 ORTHO05D004666 2.5e-06 55.8 80 35.0
BolC1t01557H Brassica oleracea HOM05D009543 ORTHO05D004666 2.5e-06 55.8 80 35.0
AL6G48230 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 3.2e-06 55.5 74 40.5
A09p26130 Brassica napus HOM05D009543 ORTHO05D004666 5.5e-06 54.7 69 37.7
C03p36430 Brassica napus HOM05D009543 ORTHO05D004666 5.5e-06 54.7 68 39.7
BolC3t15955H Brassica oleracea HOM05D009543 ORTHO05D004666 5.5e-06 54.7 68 39.7
BraA01t01269Z Brassica rapa HOM05D009543 ORTHO05D004666 5.5e-06 54.7 76 36.8
BraA09t38180Z Brassica rapa HOM05D009543 ORTHO05D004666 5.5e-06 54.7 69 37.7
AL7G31950 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 7.2e-06 54.3 76 36.8
A03p30180 Brassica napus HOM05D009543 ORTHO05D004666 7.2e-06 54.3 68 38.2
BraA03t12202Z Brassica rapa HOM05D009543 ORTHO05D004666 7.2e-06 54.3 68 38.2
Cfa017341 Carpinus fangiana HOM05D005226 ORTHO05D004666 7.2e-06 54.3 73 42.5
CARHR228690 Cardamine hirsuta HOM05D009543 ORTHO05D004666 9.4e-06 53.9 76 38.2
Thhalv10026583m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 9.4e-06 53.9 72 40.3


User provided reference genes

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