Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G01294 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 1.9e-159 565.8 304 100.0
Hma1.2p1_0191F.1_g083410 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 9.0e-32 141.7 309 44.3
Hma1.2p1_2209F.1_g317155 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 9.0e-32 141.7 309 44.3
TAR629G3100 Trochodendron aralioides HOM05D004441 ORTHO05D003109 1.3e-30 137.9 338 39.1
Nn1g06687 Nelumbo nucifera HOM05D004441 ORTHO05D003109 3.9e-27 126.3 307 42.0
Prupe.4G040000 Prunus persica HOM05D004441 ORTHO05D003109 1.3e-25 121.3 276 40.9
Dinv40519 Davidia involucrata HOM05D004441 ORTHO05D003109 3.7e-25 119.8 256 42.6
Aqoxy1G02647 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 4.8e-25 119.4 281 39.5
TPR.G36719 Trifolium pratense HOM05D004441 ORTHO05D003109 4.8e-25 119.4 254 41.3
PSO675G8062 Papaver somniferum HOM05D004441 ORTHO05D003109 1.1e-24 118.2 287 41.1
TAR626G0020 Trochodendron aralioides HOM05D004441 ORTHO05D003109 1.4e-24 117.9 281 39.5
TAR627G0319 Trochodendron aralioides HOM05D004441 ORTHO05D003109 1.4e-24 117.9 242 43.0
SalBow8G3623 Salvia bowleyana HOM05D004441 ORTHO05D003109 1.8e-24 117.5 320 37.5
SalBow8G4382 Salvia bowleyana HOM05D004441 ORTHO05D003109 1.8e-24 117.5 320 37.5
arahy.Tifrunner.gnm1.ann1.KXRU9A Arachis hypogaea HOM05D004441 ORTHO05D003109 3.1e-24 116.7 259 40.2
VMungo0540G1643 Vigna mungo HOM05D004441 ORTHO05D003109 5.0e-22 109.4 316 38.6
CsaV3_1G011910 Cucumis sativus L. HOM05D004441 ORTHO05D003109 8.5e-22 108.6 262 39.3
Lj6g0023239 Lotus japonicus HOM05D004441 ORTHO05D003109 8.5e-22 108.6 251 41.4
Medtr2g012750 Medicago truncatula HOM05D004441 ORTHO05D003109 1.1e-21 108.2 248 41.5
Lj1A1210T53 Lonicera japonica HOM05D004441 ORTHO05D003109 2.5e-21 107.1 259 44.4
PSO541G1557 Papaver somniferum HOM05D004441 ORTHO05D003109 2.5e-21 107.1 294 39.8
Psat1g207120 Pisum sativum HOM05D004441 ORTHO05D003109 7.2e-21 105.5 257 40.5
CiPaw.09G160900 Carya illinoinensis HOM05D004441 ORTHO05D003109 7.9e-20 102.1 335 35.2
RcHm_v2.0_Chr5g0007441 Rosa chinensis HOM05D004441 ORTHO05D003109 7.9e-20 102.1 287 41.1
Ca_00297_v3 Cicer arietinum L. HOM05D004441 ORTHO05D003109 1.4e-19 101.3 250 39.6
arahy.Tifrunner.gnm1.ann1.W0S7NR Arachis hypogaea HOM05D004441 ORTHO05D003109 2.3e-19 100.5 208 41.3
Glyma.13G244100 Glycine max HOM05D004441 ORTHO05D003109 5.1e-19 99.4 251 41.8
FAN25G3261 Fragaria x ananassa HOM05D004441 ORTHO05D003109 6.7e-19 99.0 264 41.3
Phvul.006G189700 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 6.7e-19 99.0 282 39.4
FAN16G1227 Fragaria x ananassa HOM05D004441 ORTHO05D003109 1.5e-18 97.8 329 35.6
MD10G1300500 Malus domestica HOM05D004441 ORTHO05D003109 1.5e-18 97.8 282 38.3
Nitab4.5_0001820g0050 Nicotiana tabacum HOM05D004441 ORTHO05D003109 1.5e-18 97.8 257 40.1
Rhsim13G0175700 Rhododendron simsii HOM05D004441 ORTHO05D003109 2.6e-18 97.1 260 42.3
Dinv39787 Davidia involucrata HOM05D004441 ORTHO05D003109 3.3e-18 96.7 314 34.7
Cc00_g11510 Coffea canephora HOM05D004441 ORTHO05D003109 4.4e-18 96.3 331 36.6
FAN11G1619 Fragaria x ananassa HOM05D004441 ORTHO05D003109 5.7e-18 95.9 264 39.0
Sed0013174 Sechium edule HOM05D004441 ORTHO05D003109 5.7e-18 95.9 261 38.7
FvH4_3g04520 Fragaria vesca HOM05D004441 ORTHO05D003109 9.7e-18 95.1 266 38.7
Lalb_Chr15g0089961 Lupinus albus HOM05D004441 ORTHO05D003109 1.3e-17 94.7 252 37.7
Nitab4.5_0007319g0010 Nicotiana tabacum HOM05D004441 ORTHO05D003109 1.7e-17 94.4 254 38.2
Duzib192G0975 Durio zibethinus HOM05D004441 ORTHO05D003109 2.2e-17 94.0 338 34.0
Thecc.06G194800 Theobroma cacao HOM05D004441 ORTHO05D003109 2.8e-17 93.6 338 33.1
Lj1A733T64 Lonicera japonica HOM05D009304 ORTHO05D003109 1.1e-16 91.7 334 37.4
Manes.13G149800 Manihot esculenta HOM05D010652 ORTHO05D003109 1.1e-16 91.7 255 34.1
Gohir.D05G166400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 1.4e-16 91.3 276 36.6
ClCG03G005640 Citrullus lanatus HOM05D004441 ORTHO05D003109 2.4e-16 90.5 262 37.0
Duzib160G0195 Durio zibethinus HOM05D004441 ORTHO05D003109 5.3e-16 89.4 334 32.0
Glyma.15G069600 Glycine max HOM05D004441 ORTHO05D003109 5.3e-16 89.4 251 40.2
Gorai.009G171500 Gossypium raimondii HOM05D004441 ORTHO05D003109 7.0e-16 89.0 276 37.3
Sc17g0006420 Simmondsia chinensis HOM05D004441 ORTHO05D003109 9.1e-16 88.6 290 35.5
Lsat_1_v5_gn_4_55461 Lactuca sativa HOM05D004441 ORTHO05D003109 1.2e-15 88.2 254 34.3
Cc05_g06660 Coffea canephora HOM05D009304 ORTHO05D003109 3.5e-15 86.7 283 37.1
CSS0013822 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 4.5e-15 86.3 247 39.7
Cpa.g.sc34.119 Carica papaya HOM05D004441 ORTHO05D003109 5.9e-15 85.9 301 34.9
COL.COLO4_31538 Corchorus olitorius HOM05D004441 ORTHO05D003109 7.7e-15 85.5 342 31.6
Gohir.A05G163400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 7.7e-15 85.5 276 35.9
MBI18_g13205_MAGBIO Magnolia biondii HOM05D004441 ORTHO05D003109 7.7e-15 85.5 316 37.0
PGR004G2153 Punica granatum HOM05D004441 ORTHO05D003109 7.7e-15 85.5 297 38.4
DCAR_004123 Daucus carota HOM05D004441 ORTHO05D003109 1.0e-14 85.1 252 38.9
CDE04G0293 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 1.3e-14 84.7 187 39.6
Lalb_Chr18g0059831 Lupinus albus HOM05D004441 ORTHO05D003109 1.7e-14 84.3 185 42.2
Gohir.A06G124300 Gossypium hirsutum HOM05D004441 ORTHO05D003109 2.9e-14 83.6 262 36.6
Nitab4.5_0003018g0090 Nicotiana tabacum HOM05D009304 ORTHO05D003109 3.8e-14 83.2 272 35.7
Gohir.D06G129200 Gossypium hirsutum HOM05D004441 ORTHO05D003109 6.5e-14 82.4 265 35.5
Gorai.010G150800 Gossypium raimondii HOM05D004441 ORTHO05D003109 6.5e-14 82.4 265 35.5
CANSAT64G2194 Cannabis sativa HOM05D010652 ORTHO05D003109 1.5e-13 81.3 278 33.8
FAN21G2327 Fragaria x ananassa HOM05D004441 ORTHO05D003109 1.5e-13 81.3 327 33.3
CSS0028025 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 2.5e-13 80.5 247 38.9
Lalb_Chr20g0122111 Lupinus albus HOM05D004441 ORTHO05D003109 2.5e-13 80.5 185 39.5
Oeu026007.1 Olea europaea HOM05D004441 ORTHO05D003109 2.5e-13 80.5 272 34.6
Dinv23691 Davidia involucrata HOM05D009304 ORTHO05D003109 9.4e-13 78.6 284 35.6
CsaV3_6G049880 Cucumis sativus L. HOM05D004441 ORTHO05D003109 1.2e-12 78.2 253 33.2
ECA234G2831 Erigeron canadensis HOM05D004441 ORTHO05D003109 1.2e-12 78.2 326 31.3
Lsat_1_v5_gn_7_20000 Lactuca sativa HOM05D004441 ORTHO05D003109 1.6e-12 77.8 250 34.4
Actinidia05598 Actinidia chinensis HOM05D004441 ORTHO05D003109 2.7e-12 77.0 218 39.4
Nitab4.5_0002370g0010 Nicotiana tabacum HOM05D009304 ORTHO05D003109 3.6e-12 76.6 273 35.9
Oeu029188.1 Olea europaea HOM05D004441 ORTHO05D003109 6.1e-12 75.9 326 33.4
Glyma.12G108500 Glycine max HOM05D010177 ORTHO05D003109 1.0e-11 75.1 268 35.1
Sabra11G0031800 Salix brachista HOM05D004441 ORTHO05D003109 1.4e-11 74.7 352 30.7
Sopen07g028460 Solanum pennellii HOM05D009304 ORTHO05D003109 1.8e-11 74.3 280 32.9
PGSC0003DMG400018324 Solanum tuberosum HOM05D009304 ORTHO05D003109 1.8e-11 74.3 280 32.9
FvH4_6g44980 Fragaria vesca HOM05D010652 ORTHO05D003109 3.0e-11 73.6 346 33.8
Glyma.13G184100 Glycine max HOM05D004441 ORTHO05D003109 3.0e-11 73.6 286 32.5
TWI63G0258 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 3.0e-11 73.6 268 36.6
Peaxi162Scf00007g00287 Petunia axillaris HOM05D009304 ORTHO05D003109 4.0e-11 73.2 255 34.5
Peaxi162Scf00612g00043 Petunia axillaris HOM05D004441 ORTHO05D003109 4.0e-11 73.2 251 34.7
Solyc07g054560.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 4.0e-11 73.2 279 32.6
DCAR_009737 Daucus carota HOM05D009304 ORTHO05D003109 6.7e-11 72.4 262 37.4
Migut.M01162 Erythranthe guttata HOM05D004441 ORTHO05D003109 6.7e-11 72.4 260 37.7
Carub.0002s0400 Capsella rubella HOM05D004441 ORTHO05D003109 1.1e-10 71.6 259 32.4
Cpa.g.sc27.93 Carica papaya HOM05D004441 ORTHO05D003109 1.1e-10 71.6 327 30.9
Potri.011G045700 Populus trichocarpa HOM05D004441 ORTHO05D003109 1.1e-10 71.6 297 35.7
PGR042G0321 Punica granatum HOM05D004441 ORTHO05D003109 1.1e-10 71.6 278 33.1
MELO3C007307.2 Cucumis melo HOM05D004441 ORTHO05D003109 1.5e-10 71.2 252 31.3
Actinidia11074 Actinidia chinensis HOM05D002331 ORTHO05D003109 2.0e-10 70.9 245 38.4
Cfa014564 Carpinus fangiana HOM05D010652 ORTHO05D003109 2.0e-10 70.9 314 29.3
Haze_13109 Corylus avellana HOM05D010652 ORTHO05D003109 2.0e-10 70.9 250 32.4
Nn1g03959 Nelumbo nucifera HOM05D004441 ORTHO05D003109 2.0e-10 70.9 179 39.1
AL2G15180 Arabidopsis lyrata HOM05D004441 ORTHO05D003109 2.6e-10 70.5 255 33.7
Manes.16G023200 Manihot esculenta HOM05D004441 ORTHO05D003109 2.6e-10 70.5 277 33.6
Solyc02g078760.1 Solanum lycopersicum HOM05D004441 ORTHO05D003109 2.6e-10 70.5 260 36.9
CDE02G3343 Ceratophyllum demersum HOM05D004441 ORTHO05D003109 4.4e-10 69.7 228 36.0
Cfa000385 Carpinus fangiana HOM05D004441 ORTHO05D003109 7.5e-10 68.9 271 31.7
PGSC0003DMG400022372 Solanum tuberosum HOM05D004441 ORTHO05D003109 7.5e-10 68.9 259 36.3
TWI38G0459 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 7.5e-10 68.9 278 35.6
FAN14G1127 Fragaria x ananassa HOM05D010652 ORTHO05D003109 9.7e-10 68.6 345 33.3
Lalb_Chr19g0135401 Lupinus albus HOM05D010177 ORTHO05D003109 9.7e-10 68.6 336 30.7
Hma1.2p1_0875F.1_g231510 Hydrangea macrophylla HOM05D009304 ORTHO05D003109 1.3e-09 68.2 246 35.8
Sed0025630 Sechium edule HOM05D004441 ORTHO05D003109 1.3e-09 68.2 246 37.0
ClCG00G003130 Citrullus lanatus HOM05D004441 ORTHO05D003109 1.7e-09 67.8 260 32.7
ClCG01G022730 Citrullus lanatus HOM05D004441 ORTHO05D003109 1.7e-09 67.8 260 32.7
Dinv01395 Davidia involucrata HOM05D009304 ORTHO05D003109 1.7e-09 67.8 220 37.7
Manes.17G041200 Manihot esculenta HOM05D004441 ORTHO05D003109 1.7e-09 67.8 288 36.5
Sopen02g023590 Solanum pennellii HOM05D004441 ORTHO05D003109 1.7e-09 67.8 258 36.0
AT1G61170 Arabidopsis thaliana HOM05D004441 ORTHO05D003109 2.8e-09 67.0 264 33.3
FAN09G1981 Fragaria x ananassa HOM05D010652 ORTHO05D003109 2.8e-09 67.0 359 29.8
Eucgr.A01789 Eucalyptus grandis HOM05D004441 ORTHO05D003109 6.3e-09 65.9 266 32.7
Eucgr.D00694 Eucalyptus grandis HOM05D004441 ORTHO05D003109 6.3e-09 65.9 277 32.1
arahy.Tifrunner.gnm1.ann1.7X1CID Arachis hypogaea HOM05D010177 ORTHO05D003109 1.1e-08 65.1 273 33.7
Phvul.002G224300 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 1.1e-08 65.1 253 34.4
Ca_20682_v3 Cicer arietinum L. HOM05D010177 ORTHO05D003109 1.4e-08 64.7 330 31.5
Glyma.U031310 Glycine max HOM05D010177 ORTHO05D003109 1.8e-08 64.3 267 33.0
Psat0s2678g0120 Pisum sativum HOM05D004441 ORTHO05D003109 1.8e-08 64.3 246 31.7
Aa31LG2G9430 Aethionema arabicum HOM05D004441 ORTHO05D003109 2.4e-08 63.9 245 34.3
Lalb_Chr22g0356441 Lupinus albus HOM05D010177 ORTHO05D003109 2.4e-08 63.9 307 31.3
Psat7g199680 Pisum sativum HOM05D010177 ORTHO05D003109 3.1e-08 63.5 274 32.1
Sed0005410 Sechium edule HOM05D002331 ORTHO05D002624 3.1e-08 63.5 256 34.8
BcaC02g10584 Brassica carinata HOM05D004441 ORTHO05D003109 4.1e-08 63.2 249 33.7
C04p27200 Brassica napus HOM05D004441 ORTHO05D003109 4.1e-08 63.2 249 33.7
BolC4t24251H Brassica oleracea HOM05D004441 ORTHO05D003109 4.1e-08 63.2 249 33.7
BraA01t03127Z Brassica rapa HOM05D004441 ORTHO05D003109 4.1e-08 63.2 250 35.2
CDE05G3194 Ceratophyllum demersum HOM05D058240 ORTHO05D003109 4.1e-08 63.2 191 31.9
Sabra05G0071200 Salix brachista HOM05D010652 ORTHO05D003109 4.1e-08 63.2 249 32.5
A01p29970 Brassica napus HOM05D004441 ORTHO05D003109 7.0e-08 62.4 257 32.7
Medtr4g089190 Medicago truncatula HOM05D004441 ORTHO05D003109 7.0e-08 62.4 244 31.6
BcaC09g49327 Brassica carinata HOM05D004441 ORTHO05D003109 9.1e-08 62.0 250 34.8
C01p37890 Brassica napus HOM05D004441 ORTHO05D003109 9.1e-08 62.0 250 34.8
BolC1t03749H Brassica oleracea HOM05D004441 ORTHO05D003109 9.1e-08 62.0 250 34.8
Lsat_1_v5_gn_4_70241 Lactuca sativa HOM05D009304 ORTHO05D003109 9.1e-08 62.0 261 33.7
Thhalv10023654m.g Eutrema salsugineum HOM05D004441 ORTHO05D003109 1.2e-07 61.6 193 38.3
Ciclev10015894m.g Citrus clementina HOM05D004441 ORTHO05D003109 1.6e-07 61.2 293 32.1
QL08p037640 Quercus lobata HOM05D010652 ORTHO05D003109 2.0e-07 60.8 330 30.3
CsaV3_7G004220 Cucumis sativus L. HOM05D032711 ORTHO05D003109 3.5e-07 60.1 254 34.6
BcaB04g20321 Brassica carinata HOM05D004441 ORTHO05D003109 7.7e-07 58.9 250 34.4
A03p66730 Brassica napus HOM05D004441 ORTHO05D003109 7.7e-07 58.9 251 33.9
BraA01t02809Z Brassica rapa HOM05D004441 ORTHO05D003109 7.7e-07 58.9 251 33.9
Haze_06542 Corylus avellana HOM05D004441 ORTHO05D003109 7.7e-07 58.9 278 30.2
Hma1.2p1_0835F.1_g225850 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 7.7e-07 58.9 207 36.7
Hma1.2p1_0835F.1_g225855 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 7.7e-07 58.9 207 36.7
Lj3g0011122 Lotus japonicus HOM05D010177 ORTHO05D003109 7.7e-07 58.9 343 32.9
Phvul.011G112800 Phaseolus vulgaris HOM05D010177 ORTHO05D003109 1.0e-06 58.5 265 32.1
Rhsim04G0066200 Rhododendron simsii HOM05D009304 ORTHO05D003109 1.0e-06 58.5 202 37.1
CARHR051480 Cardamine hirsuta HOM05D004441 ORTHO05D003109 2.2e-06 57.4 251 31.1
Potri.005G086300 Populus trichocarpa HOM05D010652 ORTHO05D003109 2.2e-06 57.4 247 30.0
Psat5g270560 Pisum sativum HOM05D010177 ORTHO05D003109 3.8e-06 56.6 321 29.3
Lj4g0026214 Lotus japonicus HOM05D004441 ORTHO05D003109 6.5e-06 55.8 247 27.9
Manes.12G087900 Manihot esculenta HOM05D010652 ORTHO05D003109 6.5e-06 55.8 261 31.4
THA.LOC104809557 Tarenaya hassleriana HOM05D004441 ORTHO05D003109 6.5e-06 55.8 272 33.5
Actinidia09882 Actinidia chinensis HOM05D009304 ORTHO05D003109 8.5e-06 55.5 249 34.5
ClCG02G001220 Citrullus lanatus HOM05D032711 ORTHO05D003109 8.5e-06 55.5 261 32.6
Solyc08g068460.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 8.5e-06 55.5 274 32.1


User provided reference genes

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