Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G01223 Aquilegia oxysepala HOM05D006115 ORTHO05D007528 3.7e-86 321.6 174 100.0
Nn1g03988 Nelumbo nucifera HOM05D006115 ORTHO05D007528 1.0e-59 233.8 176 72.2
Cfa014568 Carpinus fangiana HOM05D006115 ORTHO05D007528 1.4e-58 229.9 174 75.3
MBI02_g19258_MAGBIO Magnolia biondii HOM05D006115 ORTHO05D007528 7.9e-57 224.2 175 72.0
Nitab4.5_0005380g0050 Nicotiana tabacum HOM05D006115 ORTHO05D007528 3.9e-56 221.9 178 69.7
Manes.08G098700 Manihot esculenta HOM05D006115 ORTHO05D007528 8.8e-56 220.7 174 71.3
PGSC0003DMG400018360 Solanum tuberosum HOM05D006115 ORTHO05D007528 8.8e-56 220.7 174 69.5
CANSAT64G2665 Cannabis sativa HOM05D006115 ORTHO05D007528 2.6e-55 219.2 175 69.1
Nitab4.5_0001090g0130 Nicotiana tabacum HOM05D006115 ORTHO05D007528 2.6e-55 219.2 175 69.7
Sopen07g028230 Solanum pennellii HOM05D006115 ORTHO05D007528 2.6e-55 219.2 174 69.0
PSO210G0967 Papaver somniferum HOM05D006115 ORTHO05D007528 3.3e-55 218.8 177 66.7
PSO832G3416 Papaver somniferum HOM05D006115 ORTHO05D007528 4.4e-55 218.4 177 66.7
CSS0015532 Camellia sinensis var. sinensis HOM05D006115 ORTHO05D007528 5.7e-55 218.0 177 73.4
CSS0031699 Camellia sinensis var. sinensis HOM05D006115 ORTHO05D007528 5.7e-55 218.0 177 73.4
Solyc07g054290.1 Solanum lycopersicum HOM05D006115 ORTHO05D007528 7.4e-55 217.6 174 68.4
Haze_13113 Corylus avellana HOM05D006115 ORTHO05D007528 9.7e-55 217.2 174 70.7
RcHm_v2.0_Chr2g0162381 Rosa chinensis HOM05D006115 ORTHO05D007528 2.2e-54 216.1 176 68.2
Potri.005G206200 Populus trichocarpa HOM05D006115 ORTHO05D007528 8.2e-54 214.2 180 68.3
TWI75G0783 Tripterygium wilfordii HOM05D006115 ORTHO05D007528 2.4e-53 212.6 175 70.3
CsaV3_7G004300 Cucumis sativus L. HOM05D006115 ORTHO05D007528 3.1e-53 212.2 175 68.0
Medtr2g090200 Medicago truncatula HOM05D006115 ORTHO05D007528 3.1e-53 212.2 174 69.0
GSVIVG01030552001 Vitis vinifera HOM05D006115 ORTHO05D007528 3.1e-53 212.2 175 69.1
ClCG02G001140 Citrullus lanatus HOM05D006115 ORTHO05D007528 5.3e-53 211.5 175 70.3
FvH4_6g45050 Fragaria vesca HOM05D006115 ORTHO05D007528 5.3e-53 211.5 176 68.8
FAN14G2522 Fragaria x ananassa HOM05D006115 ORTHO05D007528 5.3e-53 211.5 176 68.8
MELO3C018748.2 Cucumis melo HOM05D006115 ORTHO05D007528 6.9e-53 211.1 175 67.4
Oeu029929.1 Olea europaea HOM05D006115 ORTHO05D007528 6.9e-53 211.1 175 68.6
Peaxi162Scf00610g00313 Petunia axillaris HOM05D006115 ORTHO05D007528 6.9e-53 211.1 175 66.9
MD09G1090500 Malus domestica HOM05D006115 ORTHO05D007528 1.2e-52 210.3 180 66.7
FAN09G2594 Fragaria x ananassa HOM05D006115 ORTHO05D007528 2.0e-52 209.5 176 67.0
Psat7g036720 Pisum sativum HOM05D006115 ORTHO05D007528 2.0e-52 209.5 174 68.4
MD17G1079700 Malus domestica HOM05D006115 ORTHO05D007528 2.6e-52 209.1 181 65.7
Eucgr.K00947 Eucalyptus grandis HOM05D006115 ORTHO05D007528 3.4e-52 208.8 178 68.0
FAN02G4183 Fragaria x ananassa HOM05D006115 ORTHO05D007528 3.4e-52 208.8 176 66.5
Cc05_g06750 Coffea canephora HOM05D006115 ORTHO05D007528 5.9e-52 208.0 178 68.0
Hma1.2p1_0875F.1_g231400 Hydrangea macrophylla HOM05D006115 ORTHO05D007528 1.3e-51 206.8 177 66.7
Lj3g0001000 Lotus japonicus HOM05D006115 ORTHO05D007528 1.3e-51 206.8 174 64.4
Sabra05G0156800 Salix brachista HOM05D006115 ORTHO05D007528 1.3e-51 206.8 176 67.6
CiPaw.04G123900 Carya illinoinensis HOM05D006115 ORTHO05D007528 1.7e-51 206.5 175 68.6
Lalb_Chr14g0366761 Lupinus albus HOM05D006115 ORTHO05D007528 1.7e-51 206.5 178 68.0
TWI18G1016 Tripterygium wilfordii HOM05D006115 ORTHO05D007528 1.7e-51 206.5 175 68.0
Phvul.005G105900 Phaseolus vulgaris HOM05D006115 ORTHO05D007528 2.9e-51 205.7 175 65.7
Duzib132G1267 Durio zibethinus HOM05D006115 ORTHO05D007528 3.8e-51 205.3 178 67.4
VMungo1080G1219 Vigna mungo HOM05D006115 ORTHO05D007528 6.5e-51 204.5 174 65.5
Lalb_Chr24g0399841 Lupinus albus HOM05D006115 ORTHO05D007528 8.5e-51 204.1 178 66.3
Prupe.3G235100 Prunus persica HOM05D006115 ORTHO05D007528 8.5e-51 204.1 179 67.0
Peaxi162Scf00132g00062 Petunia axillaris HOM05D006115 ORTHO05D007528 1.1e-50 203.8 175 64.6
QL08p037826 Quercus lobata HOM05D006115 ORTHO05D007528 1.1e-50 203.8 179 67.0
Potri.002G056300 Populus trichocarpa HOM05D006115 ORTHO05D007528 5.5e-50 201.4 181 63.5
COL.COLO4_35403 Corchorus olitorius HOM05D006115 ORTHO05D007528 7.2e-50 201.1 177 67.8
Ciclev10016927m.g Citrus clementina HOM05D006115 ORTHO05D007528 9.4e-50 200.7 178 65.2
Sabra02G0045600 Salix brachista HOM05D006115 ORTHO05D007528 2.1e-49 199.5 177 66.1
HanXRQChr17g0542591 Helianthus annuus HOM05D006115 ORTHO05D007528 2.7e-49 199.1 176 66.5
Oeu040003.1 Olea europaea HOM05D006115 ORTHO05D007528 3.6e-49 198.7 174 63.8
Rhsim06G0148500 Rhododendron simsii HOM05D006115 ORTHO05D007528 3.6e-49 198.7 171 65.5
Sed0024793 Sechium edule HOM05D006115 ORTHO05D007528 4.7e-49 198.4 175 65.7
Dinv03833 Davidia involucrata HOM05D006115 ORTHO05D007528 6.1e-49 198.0 167 70.1
Gohir.A12G137300 Gossypium hirsutum HOM05D006115 ORTHO05D007528 6.1e-49 198.0 179 64.8
AUR62028441 Chenopodium quinoa HOM05D006115 ORTHO05D007528 1.4e-48 196.8 182 66.5
DCAR_019192 Daucus carota HOM05D006115 ORTHO05D007528 1.8e-48 196.4 175 65.1
PGR142G3842 Punica granatum HOM05D006115 ORTHO05D007528 2.3e-48 196.1 185 64.9
AUR62041946 Chenopodium quinoa HOM05D006115 ORTHO05D007528 3.0e-48 195.7 182 65.9
Sed0009578 Sechium edule HOM05D006115 ORTHO05D007528 3.0e-48 195.7 174 65.5
Thecc.02G175700 Theobroma cacao HOM05D006115 ORTHO05D007528 3.9e-48 195.3 174 66.1
TPR.G35547 Trifolium pratense HOM05D006115 ORTHO05D007528 6.7e-48 194.5 175 64.0
Duzib248G0317 Durio zibethinus HOM05D006115 ORTHO05D007528 1.5e-47 193.4 176 64.2
FAN05G1351 Fragaria x ananassa HOM05D006115 ORTHO05D007528 1.5e-47 193.4 173 63.0
CDE05G3372 Ceratophyllum demersum HOM05D006115 ORTHO05D007528 2.0e-47 193.0 180 62.2
Ah.08g220260 Amaranthus hybridus HOM05D006115 ORTHO05D007528 4.4e-47 191.8 180 64.4
Migut.H01055 Erythranthe guttata HOM05D006115 ORTHO05D007528 4.4e-47 191.8 181 61.9
MSTRG.14200 Avicennia marina HOM05D006115 ORTHO05D007528 5.7e-47 191.4 180 64.4
Glyma.13G299200 Glycine max HOM05D006115 ORTHO05D007528 5.7e-47 191.4 118 83.1
SGA_v2.0_scaffold356G49787 Striga asiatica HOM05D006115 ORTHO05D007528 5.7e-47 191.4 170 64.7
Lj8P115T48 Lonicera japonica HOM05D006115 ORTHO05D007528 9.7e-47 190.7 115 84.3
Actinidia09875 Actinidia chinensis HOM05D006115 ORTHO05D007528 1.7e-46 189.9 130 79.2
unitig_749.g13954 Utricularia gibba HOM05D006115 ORTHO05D007528 2.8e-46 189.1 178 60.7
Glyma.12G202500 Glycine max HOM05D006115 ORTHO05D007528 3.7e-46 188.7 177 63.8
Gohir.A01G015900 Gossypium hirsutum HOM05D006115 ORTHO05D007528 3.7e-46 188.7 178 64.0
Zm00001eb015950 Zea mays HOM05D006115 ORTHO05D007528 3.7e-46 188.7 133 75.9
Gorai.008G152600 Gossypium raimondii HOM05D006115 ORTHO05D007528 4.8e-46 188.3 174 64.9
Atru.chr6.3034 Acer truncatum HOM05D006115 ORTHO05D007528 6.3e-46 188.0 181 63.0
MSTRG.12305 Avicennia marina HOM05D006115 ORTHO05D007528 8.2e-46 187.6 176 63.6
Gohir.D12G141300 Gossypium hirsutum HOM05D006115 ORTHO05D007528 1.1e-45 187.2 174 64.4
unitig_26.g9943 Utricularia gibba HOM05D006115 ORTHO05D007528 3.1e-45 185.7 183 61.2
Lsat_1_v5_gn_3_39480 Lactuca sativa HOM05D006115 ORTHO05D007528 4.1e-45 185.3 174 61.5
Gohir.D01G015900 Gossypium hirsutum HOM05D006115 ORTHO05D007528 7.0e-45 184.5 176 63.1
Gorai.002G017600 Gossypium raimondii HOM05D006115 ORTHO05D007528 1.2e-44 183.7 176 63.1
Lj1P733T48 Lonicera japonica HOM05D006115 ORTHO05D007528 1.6e-44 183.3 126 73.8
THA.LOC104827374 Tarenaya hassleriana HOM05D006115 ORTHO05D007528 5.9e-44 181.4 134 70.1
Aa31LG1G20930 Aethionema arabicum HOM05D006115 ORTHO05D007528 1.0e-43 180.6 177 60.5
Sc12g0002830 Simmondsia chinensis HOM05D006115 ORTHO05D007528 1.0e-43 180.6 103 89.3
HPP92_017628 Vanilla planifolia HOM05D006115 ORTHO05D007528 1.0e-43 180.6 154 65.6
Zm00001eb395230 Zea mays HOM05D006115 ORTHO05D007528 2.9e-43 179.1 132 72.0
AL1G13100 Arabidopsis lyrata HOM05D006115 ORTHO05D007528 8.5e-43 177.6 137 67.9
BolC8t46868H Brassica oleracea HOM05D006115 ORTHO05D007528 8.5e-43 177.6 141 67.4
THA.LOC104801178 Tarenaya hassleriana HOM05D006115 ORTHO05D007528 1.5e-42 176.8 107 81.3
AT1G03600 Arabidopsis thaliana HOM05D006115 ORTHO05D007528 1.9e-42 176.4 140 67.9
Os03g0333400 Oryza sativa ssp. japonica HOM05D006115 ORTHO05D007528 1.9e-42 176.4 170 60.6
BcaB02g06915 Brassica carinata HOM05D006115 ORTHO05D007528 1.2e-41 173.7 150 63.3
ECA246G1074 Erigeron canadensis HOM05D006115 ORTHO05D007528 1.2e-41 173.7 174 58.6
Thhalv10008901m.g Eutrema salsugineum HOM05D006115 ORTHO05D007528 2.1e-41 172.9 180 58.3
BraA08t35627Z Brassica rapa HOM05D006115 ORTHO05D007528 3.6e-41 172.2 181 58.0
A08p37300 Brassica napus HOM05D006115 ORTHO05D007528 8.0e-41 171.0 180 57.8
A10p02120 Brassica napus HOM05D006115 ORTHO05D007528 1.0e-40 170.6 178 57.9
BraA10t42481Z Brassica rapa HOM05D006115 ORTHO05D007528 5.2e-40 168.3 105 77.1
BcaC05g24519 Brassica carinata HOM05D006115 ORTHO05D007528 8.8e-40 167.5 182 55.5
C05p02030 Brassica napus HOM05D006115 ORTHO05D007528 8.8e-40 167.5 182 55.5
BolC5t28981H Brassica oleracea HOM05D006115 ORTHO05D007528 8.8e-40 167.5 177 55.9
BcaC07g36953 Brassica carinata HOM05D006115 ORTHO05D007528 1.2e-39 167.2 180 57.8
C08p00700 Brassica napus HOM05D006115 ORTHO05D007528 1.2e-39 167.2 180 57.8
CARHR002940 Cardamine hirsuta HOM05D006115 ORTHO05D007528 2.0e-39 166.4 177 56.5
Carub.0001s0272 Capsella rubella HOM05D006115 ORTHO05D007528 2.6e-39 166.0 177 58.2
Duzib052G1052 Durio zibethinus HOM05D006115 ORTHO05D007528 3.3e-39 165.6 166 60.2
Sp1g02510 Schrenkiella parvula HOM05D006115 ORTHO05D007528 2.8e-38 162.5 178 54.5
SEGI_04908 Sequoiadendron giganteum HOM05D006115 ORTHO05D007528 2.9e-35 152.5 110 70.0
CDE05G0569 Ceratophyllum demersum HOM05D006115 ORTHO05D007528 8.0e-33 144.4 143 59.4
SMO364G0930 Selaginella moellendorffii HOM05D006115 ORTHO05D007528 5.2e-32 141.7 138 55.8
Ca_01513_v3 Cicer arietinum L. HOM05D006115 ORTHO05D007528 3.4e-31 139.0 85 80.0
Pp3c9_26020 Physcomitrium patens HOM05D006115 ORTHO05D007528 7.5e-31 137.9 149 50.3
Actinidia11067 Actinidia chinensis HOM05D006115 ORTHO05D007528 9.8e-31 137.5 139 64.0
TAR627G0228 Trochodendron aralioides HOM05D006115 ORTHO05D007528 4.8e-30 135.2 128 61.7
Mapoly0049s0056 Marchantia polymorpha HOM05D006115 ORTHO05D007528 1.8e-29 133.3 111 58.6
AagrBONN_evm.TU.Sc2ySwM_228.954 Anthoceros agrestis HOM05D006115 ORTHO05D007528 4.5e-28 128.6 104 58.7
CBR_g50764 Chara braunii HOM05D006115 ORTHO05D007528 6.5e-27 124.8 117 57.3
MCO14G469 Micromonas commoda HOM05D006115 ORTHO05D007528 1.6e-20 103.6 150 40.0
Cre05.g243800 Chlamydomonas reinhardtii HOM05D006115 ORTHO05D007528 1.9e-18 96.7 172 37.2
ATR0693G305 Amborella trichopoda HOM05D006115 ORTHO05D007528 1.0e-16 90.9 130 50.0
Dinv23684 Davidia involucrata HOM05D006115 ORTHO05D007528 7.5e-15 84.7 170 40.6
Gorai.011G195700 Gossypium raimondii HOM05D007072 ORTHO05D008841 2.6e-07 59.7 98 30.6
Gohir.D10G174900 Gossypium hirsutum HOM05D007072 ORTHO05D008841 3.4e-07 59.3 98 29.6
FAN22G0737 Fragaria x ananassa HOM05D007072 ORTHO05D008841 5.8e-07 58.5 100 29.0
Gohir.A10G168700 Gossypium hirsutum HOM05D007072 ORTHO05D008841 5.8e-07 58.5 98 29.6
FvH4_4g15520 Fragaria vesca HOM05D007072 ORTHO05D008841 1.3e-06 57.4 98 28.6
FAN12G0870 Fragaria x ananassa HOM05D007072 ORTHO05D008841 1.3e-06 57.4 98 28.6
Ciclev10005922m.g Citrus clementina HOM05D007072 ORTHO05D008841 1.7e-06 57.0 98 28.6
MD16G1193700 Malus domestica HOM05D007072 ORTHO05D008841 1.7e-06 57.0 98 28.6
FAN07G0953 Fragaria x ananassa HOM05D007072 ORTHO05D008841 2.2e-06 56.6 98 28.6
BcaB02g06864 Brassica carinata HOM05D007072 ORTHO05D008841 2.9e-06 56.2 98 28.6
A10p04090 Brassica napus HOM05D007072 ORTHO05D008841 2.9e-06 56.2 98 28.6
BolC5t29149H Brassica oleracea HOM05D007072 ORTHO05D008841 2.9e-06 56.2 98 28.6
BraA10t42680Z Brassica rapa HOM05D007072 ORTHO05D008841 2.9e-06 56.2 98 28.6
Prupe.1G013400 Prunus persica HOM05D007072 ORTHO05D008841 2.9e-06 56.2 98 28.6
CSS0014065 Camellia sinensis var. sinensis HOM05D007072 ORTHO05D008841 3.7e-06 55.8 98 28.6
COL.COLO4_04736 Corchorus olitorius HOM05D007072 ORTHO05D008841 3.7e-06 55.8 98 27.6
Hma1.2p1_1344F.1_g277130 Hydrangea macrophylla HOM05D007072 ORTHO05D008841 6.4e-06 55.1 104 27.9
Carub.0001s0473 Capsella rubella HOM05D007072 ORTHO05D008841 8.3e-06 54.7 98 27.6


User provided reference genes

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