Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 2.2e-304 1048.1 518 100.0
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 8.8e-253 876.7 523 81.1
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 3.3e-215 751.9 525 70.3
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.6e-214 749.6 529 71.8
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.6e-214 749.6 529 71.8
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 4.3e-207 724.9 524 68.7
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 2.1e-206 722.6 511 68.9
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 2.1e-206 722.6 511 68.9
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 5.4e-202 708.0 515 67.6
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 5.4e-202 708.0 515 67.6
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 3.5e-201 705.3 519 65.9
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 1.0e-200 703.7 523 66.5
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 5.0e-200 701.4 525 64.8
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 1.1e-199 700.3 530 64.7
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 1.1e-199 700.3 518 65.6
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 9.5e-199 697.2 525 65.0
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 1.2e-198 696.8 522 65.9
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 1.1e-197 693.7 524 65.5
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.2e-196 690.3 515 65.2
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 2.6e-196 689.1 523 65.6
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 2.6e-196 689.1 519 64.9
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 2.2e-195 686.0 515 64.9
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 4.9e-195 684.9 516 64.5
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 2.4e-194 682.6 525 64.4
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 2.4e-194 682.6 520 64.4
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 3.2e-194 682.2 519 65.7
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 3.2e-194 682.2 537 62.4
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 4.1e-194 681.8 519 65.7
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 7.1e-194 681.0 522 64.6
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 1.6e-193 679.9 544 62.5
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 1.6e-193 679.9 544 62.5
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 2.7e-193 679.1 523 65.0
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 3.5e-193 678.7 526 63.3
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 1.0e-192 677.2 515 63.9
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 2.3e-192 676.0 518 64.1
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 3.0e-192 675.6 493 65.7
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 8.6e-192 674.1 518 64.7
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.5e-191 673.3 513 63.9
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 3.3e-191 672.2 519 64.7
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 4.3e-191 671.8 521 63.9
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 4.3e-191 671.8 527 64.1
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 9.5e-191 670.6 513 63.7
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 9.5e-191 670.6 459 70.4
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 1.6e-190 669.8 520 63.5
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 2.8e-190 669.1 513 63.7
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 3.6e-190 668.7 514 63.6
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 3.6e-190 668.7 521 63.7
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 6.2e-190 667.9 513 64.1
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 2.3e-189 666.0 517 63.6
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 2.3e-189 666.0 523 64.1
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 4.0e-189 665.2 523 65.6
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 5.2e-189 664.8 511 62.2
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 1.5e-188 663.3 519 63.4
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 2.0e-188 662.9 520 63.1
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 2.0e-188 662.9 535 62.2
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 2.6e-188 662.5 516 64.0
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 2.6e-188 662.5 524 64.9
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 3.4e-188 662.1 522 64.2
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 5.8e-188 661.4 523 62.7
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 9.9e-188 660.6 518 65.1
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 1.3e-187 660.2 519 62.4
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 1.3e-187 660.2 516 63.8
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 1.7e-187 659.8 517 65.2
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 3.8e-187 658.7 528 62.3
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 3.8e-187 658.7 524 61.8
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 1.1e-186 657.1 533 62.3
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 4.1e-186 655.2 520 63.5
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 9.2e-186 654.1 528 61.4
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 1.6e-185 653.3 524 61.8
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 2.1e-185 652.9 519 61.8
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 3.5e-185 652.1 515 63.3
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 1.0e-184 650.6 510 63.1
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 1.3e-184 650.2 519 62.2
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 3.0e-184 649.0 524 61.1
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 7.3e-183 644.4 522 61.7
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.4e-181 640.2 519 63.0
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 1.5e-180 636.7 545 60.2
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 3.4e-180 635.6 519 60.3
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 4.4e-180 635.2 521 60.8
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 1.3e-179 633.6 518 61.0
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 1.7e-179 633.3 460 64.1
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 8.4e-179 630.9 539 60.1
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 3.2e-178 629.0 538 59.3
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 9.3e-178 627.5 541 59.0
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 2.7e-177 625.9 535 61.1
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 6.0e-177 624.8 450 63.1
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 1.0e-176 624.0 531 59.9
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 1.0e-176 624.0 539 59.0
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 1.3e-176 623.6 539 59.2
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 1.7e-176 623.2 530 60.0
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 1.7e-176 623.2 531 59.9
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 1.7e-176 623.2 536 59.5
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 5.1e-176 621.7 546 58.4
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 5.6e-175 618.2 518 58.7
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 1.3e-171 607.1 529 58.6
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 2.9e-171 605.9 519 59.0
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 1.4e-170 603.6 460 62.2
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 1.4e-170 603.6 453 64.7
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 1.0e-168 597.4 464 61.6
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 1.3e-168 597.0 465 60.9
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 1.3e-168 597.0 533 56.5
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 1.3e-166 590.5 516 57.6
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 4.8e-166 588.6 410 67.6
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.4e-165 587.0 454 61.5
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 1.8e-165 586.6 528 57.4
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 4.0e-165 585.5 530 58.1
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 3.4e-164 582.4 393 71.2
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 6.0e-161 571.6 433 62.8
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 7.9e-161 571.2 446 63.7
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 7.6e-156 554.7 472 58.3
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 2.4e-149 533.1 311 80.1
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 4.5e-148 528.9 383 66.1
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 3.0e-144 516.2 446 56.7
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 3.7e-142 509.2 468 56.2
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 1.9e-138 496.9 311 73.3
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 2.5e-138 496.5 297 76.8
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 3.3e-135 486.1 311 72.3
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 7.2e-130 468.4 306 70.9
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 3.1e-125 453.0 469 45.2
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 9.7e-119 431.4 383 56.4
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 3.1e-117 426.4 290 68.6
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 8.5e-115 418.3 523 42.4
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 1.0e-112 411.4 456 46.1
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 6.5e-107 392.1 246 74.8
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 3.6e-105 386.3 238 75.2
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 2.6e-103 380.2 239 74.1
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 1.3e-86 324.7 472 43.6
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 2.8e-81 307.0 341 50.4
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 6.4e-78 295.8 196 70.9
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 8.3e-78 295.4 200 68.5
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 8.3e-78 295.4 215 65.6
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 5.4e-77 292.7 215 62.8
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 2.5e-66 257.3 267 53.2
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 2.6e-63 247.3 166 71.1
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 1.5e-55 221.5 192 57.8
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 2.6e-55 220.7 192 58.3
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 7.4e-50 202.6 129 69.8
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 7.4e-50 202.6 129 69.8
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 1.1e-48 198.7 124 71.8
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 3.1e-48 197.2 189 51.9
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-47 194.9 428 29.9
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 1.5e-47 194.9 231 45.9
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 2.6e-47 194.1 157 62.4
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.5e-39 168.3 109 72.5
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 3.8e-38 163.7 165 50.9
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 5.5e-37 159.8 106 66.0
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 5.5e-37 159.8 272 37.1
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 6.7e-35 152.9 262 37.0
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 2.5e-34 151.0 156 47.4
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 3.7e-33 147.1 172 45.3
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 2.4e-32 144.4 300 32.7
CDE07G0680 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 6.9e-32 142.9 120 58.3
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 6.9e-32 142.9 269 35.3
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 6.5e-30 136.3 86 75.6
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 2.1e-28 131.3 76 75.0
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 2.1e-28 131.3 76 75.0
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 5.1e-27 126.7 101 64.4
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 2.2e-25 121.3 85 63.5
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 1.8e-19 101.7 96 55.2
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 2.0e-15 88.2 59 67.8
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 1.0e-14 85.9 74 58.1
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 1.4e-13 82.0 91 47.3
AagrBONN_evm.TU.Sc2ySwM_228.1050 Anthoceros agrestis HOM05D004336 ORTHO05D005367 3.7e-09 67.4 165 29.7
Eucgr.F00781 Eucalyptus grandis HOM05D004336 ORTHO05D192954 3.1e-08 64.3 147 35.4
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 2.2e-06 58.2 34 82.4


User provided reference genes

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