Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G01116 Aquilegia oxysepala HOM05D004905 ORTHO05D005456 8.2e-95 350.5 195 100.0
Aqoxy3G04036 Aquilegia oxysepala HOM05D004905 ORTHO05D005456 2.0e-72 276.2 164 93.9
Aqoxy4G00894 Aquilegia oxysepala HOM05D004905 ORTHO05D005456 7.3e-43 177.9 107 91.6
Lj4P184T26 Lonicera japonica HOM05D004905 ORTHO05D005456 2.2e-39 166.4 173 56.6
QL02p050316 Quercus lobata HOM05D004905 ORTHO05D005456 2.7e-37 159.5 177 52.0
QL04p012071 Quercus lobata HOM05D004905 ORTHO05D005456 4.6e-37 158.7 177 51.4
Dinv33966 Davidia involucrata HOM05D001288 ORTHO05D005456 1.7e-36 156.8 147 59.9
Duzib138G0198 Durio zibethinus HOM05D004905 ORTHO05D005456 1.7e-36 156.8 189 49.7
TAR426G0001 Trochodendron aralioides HOM05D004905 ORTHO05D005456 1.7e-36 156.8 161 55.9
TAR535G0011 Trochodendron aralioides HOM05D004905 ORTHO05D005456 1.7e-36 156.8 161 55.9
Cfa007892 Carpinus fangiana HOM05D004905 ORTHO05D005456 1.1e-35 154.1 177 52.0
Lalb_Chr10g0091451 Lupinus albus HOM05D004905 ORTHO05D005456 3.3e-35 152.5 170 52.4
Lalb_Chr04g0257631 Lupinus albus HOM05D004905 ORTHO05D005456 4.3e-35 152.1 194 49.5
Haze_14185 Corylus avellana HOM05D004905 ORTHO05D005456 2.1e-34 149.8 169 53.3
Eucgr.F02791 Eucalyptus grandis HOM05D004905 ORTHO05D005456 6.2e-34 148.3 171 51.5
Potri.004G095800 Populus trichocarpa HOM05D004905 ORTHO05D005456 6.2e-34 148.3 178 51.1
RcHm_v2.0_Chr2g0123711 Rosa chinensis HOM05D004905 ORTHO05D005456 6.2e-34 148.3 180 47.2
CANSAT11G1581 Cannabis sativa HOM05D004905 ORTHO05D005456 1.1e-33 147.5 181 49.2
Potri.017G118900 Populus trichocarpa HOM05D004905 ORTHO05D005456 2.4e-33 146.4 179 49.2
Glyma.18G294100 Glycine max HOM05D004905 ORTHO05D005456 2.6e-32 142.9 168 51.8
Prupe.3G148500 Prunus persica HOM05D004905 ORTHO05D005456 4.4e-32 142.1 157 52.2
Ciclev10011170m.g Citrus clementina HOM05D004905 ORTHO05D005456 7.6e-32 141.4 173 48.0
Ca_08091_v3 Cicer arietinum L. HOM05D004905 ORTHO05D005456 9.9e-32 141.0 181 48.6
Nn3g17953 Nelumbo nucifera HOM05D004905 ORTHO05D005456 1.3e-31 140.6 180 46.1
arahy.Tifrunner.gnm1.ann1.00EJBM Arachis hypogaea HOM05D004905 ORTHO05D005456 2.2e-31 139.8 181 50.8
arahy.Tifrunner.gnm1.ann1.VL1078 Arachis hypogaea HOM05D004905 ORTHO05D005456 2.2e-31 139.8 181 50.8
FvH4_1g25551 Fragaria vesca HOM05D004905 ORTHO05D005456 2.2e-31 139.8 162 51.2
FAN19G0313 Fragaria x ananassa HOM05D004905 ORTHO05D005456 2.2e-31 139.8 162 51.2
Sabra17G0098200 Salix brachista HOM05D004905 ORTHO05D005456 2.2e-31 139.8 185 44.3
MSTRG.23594 Avicennia marina HOM05D004905 ORTHO05D005456 2.9e-31 139.4 181 46.4
CSS0040498 Camellia sinensis var. sinensis HOM05D004905 ORTHO05D005456 2.9e-31 139.4 160 50.0
Atru.chr1.1616 Acer truncatum HOM05D004905 ORTHO05D005456 3.8e-31 139.0 157 52.2
Oeu030795.1 Olea europaea HOM05D004905 ORTHO05D005456 3.8e-31 139.0 164 51.2
FAN26G1687 Fragaria x ananassa HOM05D004905 ORTHO05D005456 8.4e-31 137.9 165 50.9
COL.COLO4_09375 Corchorus olitorius HOM05D004905 ORTHO05D005456 7.1e-30 134.8 156 51.9
Medtr7g082660 Medicago truncatula HOM05D004905 ORTHO05D005456 7.1e-30 134.8 180 48.9
TWI74G1312 Tripterygium wilfordii HOM05D004905 ORTHO05D005456 7.1e-30 134.8 162 49.4
Nitab4.5_0011439g0010 Nicotiana tabacum HOM05D004905 ORTHO05D005456 1.6e-29 133.7 175 48.0
FAN28G0686 Fragaria x ananassa HOM05D004905 ORTHO05D005456 2.1e-29 133.3 162 48.8
Nitab4.5_0000753g0160 Nicotiana tabacum HOM05D004905 ORTHO05D005456 2.7e-29 132.9 176 46.0
Oeu041980.1 Olea europaea HOM05D004905 ORTHO05D005456 2.7e-29 132.9 156 50.6
TPR.G16546 Trifolium pratense HOM05D004905 ORTHO05D005456 4.6e-29 132.1 167 49.1
Phvul.004G002200 Phaseolus vulgaris HOM05D004905 ORTHO05D005456 7.8e-29 131.3 169 46.7
PGSC0003DMG400026397 Solanum tuberosum HOM05D004905 ORTHO05D005456 1.0e-28 131.0 174 48.3
Psat3g097720 Pisum sativum HOM05D004905 ORTHO05D005456 2.3e-28 129.8 168 50.0
Migut.H00239 Erythranthe guttata HOM05D004905 ORTHO05D005456 3.9e-28 129.0 157 47.1
Nn4g23955 Nelumbo nucifera HOM05D004905 ORTHO05D005456 3.9e-28 129.0 162 46.3
Sopen02g031010 Solanum pennellii HOM05D004905 ORTHO05D005456 5.1e-28 128.6 174 46.0
TWI53G1125 Tripterygium wilfordii HOM05D004905 ORTHO05D005456 8.7e-28 127.9 182 47.3
CAN.G625.56 Capsicum annuum HOM05D004905 ORTHO05D005456 1.9e-27 126.7 174 45.4
CDE02G1873 Ceratophyllum demersum HOM05D004905 ORTHO05D005456 2.5e-27 126.3 162 47.5
Solyc02g086350.3 Solanum lycopersicum HOM05D004905 ORTHO05D005456 5.6e-27 125.2 174 46.0
CSS0018291 Camellia sinensis var. sinensis HOM05D004905 ORTHO05D005456 7.3e-27 124.8 131 55.7
DCAR_010704 Daucus carota HOM05D004905 ORTHO05D005456 9.6e-27 124.4 168 47.6
VMungo0464G1170 Vigna mungo HOM05D004905 ORTHO05D005456 9.6e-27 124.4 166 43.4
arahy.Tifrunner.gnm1.ann1.NNR4KN Arachis hypogaea HOM05D004905 ORTHO05D005456 2.1e-26 123.2 169 46.2
VMungo1383G0301 Vigna mungo HOM05D004905 ORTHO05D005456 2.1e-26 123.2 147 50.3
arahy.Tifrunner.gnm1.ann1.98PLAU Arachis hypogaea HOM05D004905 ORTHO05D005456 4.8e-26 122.1 169 45.6
MD09G1256700 Malus domestica HOM05D004905 ORTHO05D005456 1.2e-24 117.5 136 47.8
SalBow3G3699 Salvia bowleyana HOM05D004905 ORTHO05D005456 1.5e-24 117.1 166 42.8
Peaxi162Scf00877g00001 Petunia axillaris HOM05D004905 ORTHO05D005456 2.6e-24 116.3 171 43.9
DCAR_011263 Daucus carota HOM05D004905 ORTHO05D005456 4.5e-24 115.5 186 39.8
Lsat_1_v5_gn_2_80961 Lactuca sativa HOM05D004905 ORTHO05D005456 9.9e-24 114.4 140 48.6
Glyma.02G089100 Glycine max HOM05D001288 ORTHO05D001123 6.4e-23 111.7 131 51.9
Actinidia15900 Actinidia chinensis HOM05D004905 ORTHO05D005456 8.4e-23 111.3 156 44.2
Lj1g0028143 Lotus japonicus HOM05D004905 ORTHO05D005456 8.4e-23 111.3 149 47.7
MD17G1250200 Malus domestica HOM05D004905 ORTHO05D005456 8.4e-23 111.3 143 44.8
Phvul.008G008400 Phaseolus vulgaris HOM05D004905 ORTHO05D005456 1.1e-22 110.9 116 52.6
Glyma.19G001900 Glycine max HOM05D004905 ORTHO05D005456 1.9e-22 110.2 133 50.4
AUR62023266 Chenopodium quinoa HOM05D004905 ORTHO05D005456 5.4e-22 108.6 153 41.8
Cpa.g.sc170.31 Carica papaya HOM05D004905 ORTHO05D005456 1.2e-21 107.5 171 39.8
AUR62009040 Chenopodium quinoa HOM05D004905 ORTHO05D005456 4.6e-21 105.5 153 40.5
EL10Ac2g04529 Beta vulgaris HOM05D004905 ORTHO05D005456 1.0e-20 104.4 166 39.2
Lj2C439T5 Lonicera japonica HOM05D004905 ORTHO05D005456 3.3e-19 99.4 162 40.7
HanXRQChr09g0262681 Helianthus annuus HOM05D004905 ORTHO05D005456 1.3e-18 97.4 158 39.2
PSO017G0866 Papaver somniferum HOM05D004905 ORTHO05D005456 2.1e-18 96.7 152 40.8
Cc07_g08530 Coffea canephora HOM05D004905 ORTHO05D005456 2.8e-18 96.3 116 49.1
Gohir.D11G172100 Gossypium hirsutum HOM05D004905 ORTHO05D005456 3.7e-18 95.9 76 65.8
Gorai.007G184500 Gossypium raimondii HOM05D004905 ORTHO05D005456 3.7e-18 95.9 76 65.8
Hma1.2p1_0500F.1_g167210 Hydrangea macrophylla HOM05D004905 ORTHO05D005456 4.8e-18 95.5 107 49.5
CiPaw.03G064700 Carya illinoinensis HOM05D004905 ORTHO05D005456 1.1e-17 94.4 117 48.7
Sp7g03910 Schrenkiella parvula HOM05D004905 ORTHO05D005456 1.4e-17 94.0 177 33.9
vmacro22954 Vaccinium macrocarpon HOM05D004905 ORTHO05D005456 1.8e-17 93.6 113 49.6
Glyma.05G002000 Glycine max HOM05D004905 ORTHO05D005456 2.4e-17 93.2 98 53.1
Thecc.04G128800 Theobroma cacao HOM05D004905 ORTHO05D005456 3.1e-17 92.8 110 50.0
Gohir.A11G165900 Gossypium hirsutum HOM05D004905 ORTHO05D005456 4.0e-17 92.4 74 64.9
ECA232G5032 Erigeron canadensis HOM05D004905 ORTHO05D005456 5.3e-17 92.0 128 42.2
ECA238G0899 Erigeron canadensis HOM05D004905 ORTHO05D005456 9.0e-17 91.3 113 47.8
Aa31LG2G3310 Aethionema arabicum HOM05D004905 ORTHO05D005456 1.2e-16 90.9 177 34.5
Manes.02G071500 Manihot esculenta HOM05D004905 ORTHO05D005456 3.4e-16 89.4 108 48.1
Hund13701 Selenicereus undatus HOM05D004905 ORTHO05D005456 4.5e-16 89.0 165 36.4
SGA_v2.0_scaffold202G41468 Striga asiatica HOM05D004905 ORTHO05D005456 9.9e-16 87.8 130 38.5
CsaV3_2G033850 Cucumis sativus L. HOM05D004905 ORTHO05D005456 2.2e-15 86.7 119 45.4
Rhsim10G0072700 Rhododendron simsii HOM05D004905 ORTHO05D005456 2.2e-15 86.7 121 46.3
MELO3C008158.2 Cucumis melo HOM05D004905 ORTHO05D005456 2.9e-15 86.3 119 46.2
PSO478G4495 Papaver somniferum HOM05D004905 ORTHO05D005456 2.9e-15 86.3 152 39.5
PGR004G1909 Punica granatum HOM05D004905 ORTHO05D005456 2.9e-15 86.3 106 48.1
Aa31LG9G17230 Aethionema arabicum HOM05D004905 ORTHO05D005456 4.9e-15 85.5 150 36.7
ClCG11G007710 Citrullus lanatus HOM05D004905 ORTHO05D005456 8.4e-15 84.7 117 45.3
QL06p049807 Quercus lobata HOM05D004905 ORTHO05D005456 1.1e-14 84.3 113 46.9
BraA04t16780Z Brassica rapa HOM05D004905 ORTHO05D005456 1.4e-14 84.0 158 32.9
Carub.0005s1253 Capsella rubella HOM05D004905 ORTHO05D005456 1.4e-14 84.0 189 32.3
Sed0000790 Sechium edule HOM05D004905 ORTHO05D005456 2.4e-14 83.2 120 44.2
HanXRQChr07g0190621 Helianthus annuus HOM05D004905 ORTHO05D005456 5.5e-14 82.0 125 40.0
ATR0681G096 Amborella trichopoda HOM05D004905 ORTHO05D005456 1.2e-13 80.9 120 43.3
AT1G66840 Arabidopsis thaliana HOM05D004905 ORTHO05D005456 1.6e-13 80.5 154 37.0
Dinv34793 Davidia involucrata HOM05D004905 ORTHO05D005456 2.1e-13 80.1 78 56.4
Gohir.A07G175500 Gossypium hirsutum HOM05D004905 ORTHO05D005456 2.1e-13 80.1 111 45.9
AUR62023222 Chenopodium quinoa HOM05D004905 ORTHO05D005456 2.7e-13 79.7 113 40.7
AL2G25050 Arabidopsis lyrata HOM05D004905 ORTHO05D005456 3.5e-13 79.3 178 33.1
A04p11140 Brassica napus HOM05D004905 ORTHO05D005456 3.5e-13 79.3 164 32.9
Thhalv10027702m.g Eutrema salsugineum HOM05D004905 ORTHO05D005456 3.5e-13 79.3 145 35.2
Carub.0002s1304 Capsella rubella HOM05D004905 ORTHO05D005456 7.9e-13 78.2 155 35.5
BcaB06g27171 Brassica carinata HOM05D004905 ORTHO05D005456 1.0e-12 77.8 173 33.5
unitig_899.g14515 Utricularia gibba HOM05D004905 ORTHO05D005456 1.3e-12 77.4 163 31.9
C04p44880 Brassica napus HOM05D004905 ORTHO05D005456 1.8e-12 77.0 178 31.5
Ah.10g037620 Amaranthus hybridus HOM05D004905 ORTHO05D005456 3.9e-12 75.9 166 33.1
AL7G52720 Arabidopsis lyrata HOM05D004905 ORTHO05D005456 3.9e-12 75.9 177 29.9
Gohir.D07G181800 Gossypium hirsutum HOM05D004905 ORTHO05D005456 5.1e-12 75.5 118 42.4
Sp5g21810 Schrenkiella parvula HOM05D004905 ORTHO05D005456 5.1e-12 75.5 178 32.0
CARHR058960 Cardamine hirsuta HOM05D004905 ORTHO05D005456 6.7e-12 75.1 154 33.1
Gorai.001G202800 Gossypium raimondii HOM05D004905 ORTHO05D005456 1.1e-11 74.3 118 41.5
Sc10g0001050 Simmondsia chinensis HOM05D004905 ORTHO05D005456 2.5e-11 73.2 108 46.3
AT5G38150 Arabidopsis thaliana HOM05D004905 ORTHO05D005456 3.3e-11 72.8 174 29.9
BcaB03g15228 Brassica carinata HOM05D004905 ORTHO05D005456 5.6e-11 72.0 140 35.7
Lsat_1_v5_gn_4_155561 Lactuca sativa HOM05D004905 ORTHO05D005456 7.4e-11 71.6 89 44.9
GSVIVG01030977001 Vitis vinifera HOM05D004905 ORTHO05D005456 1.3e-10 70.9 74 51.4
BcaC08g46129 Brassica carinata HOM05D004905 ORTHO05D005456 1.6e-10 70.5 141 34.0
A07p33640 Brassica napus HOM05D004905 ORTHO05D005456 1.6e-10 70.5 137 35.0
BraA07t30992Z Brassica rapa HOM05D004905 ORTHO05D005456 1.6e-10 70.5 137 35.0
BolC6t39105H Brassica oleracea HOM05D004905 ORTHO05D005456 2.8e-10 69.7 144 33.3
BcaC02g09630 Brassica carinata HOM05D004905 ORTHO05D005456 8.2e-10 68.2 178 30.3
C06p40220 Brassica napus HOM05D000005 ORTHO05D005456 8.2e-10 68.2 137 34.3
BolC4t26067H Brassica oleracea HOM05D004905 ORTHO05D005456 8.2e-10 68.2 178 30.3
Os05g0550100 Oryza sativa ssp. japonica HOM05D004905 ORTHO05D005456 3.1e-09 66.2 129 36.4
Zm00001eb156080 Zea mays HOM05D004905 ORTHO05D005456 5.3e-09 65.5 170 31.8
Ah.06g180970 Amaranthus hybridus HOM05D001827 ORTHO05D001790 2.0e-08 63.5 150 29.3
HanXRQChr11g0325151 Helianthus annuus HOM05D004905 ORTHO05D005456 3.4e-08 62.8 125 37.6
HPP92_008194 Vanilla planifolia HOM05D004905 ORTHO05D005456 2.2e-07 60.1 64 48.4
THA.LOC104823849 Tarenaya hassleriana HOM05D004905 ORTHO05D005456 8.4e-07 58.2 165 26.7
unitig_37.g12374 Utricularia gibba HOM05D004905 ORTHO05D005456 3.2e-06 56.2 162 30.2


User provided reference genes

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