Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G00762 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 5.7e-211 737.3 358 100.0
Aqoxy3G03726 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.1e-188 663.3 363 90.6
Aqoxy5G03390 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 3.1e-164 582.0 317 91.2
Aqoxy3G02634 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 2.3e-119 433.0 250 88.0
arahy.Tifrunner.gnm1.ann1.L1792D Arachis hypogaea HOM05D004937 ORTHO05D006414 2.5e-81 306.6 273 55.7
Thecc.06G222700 Theobroma cacao HOM05D004937 ORTHO05D006414 1.2e-78 297.7 271 55.7
TWI63G0901 Tripterygium wilfordii HOM05D004937 ORTHO05D006414 1.2e-78 297.7 272 56.2
Psat4g006200 Pisum sativum HOM05D004937 ORTHO05D006414 2.0e-78 297.0 271 55.4
arahy.Tifrunner.gnm1.ann1.VWCB5J Arachis hypogaea HOM05D004937 ORTHO05D006414 4.4e-78 295.8 273 55.3
Glyma.17G012400 Glycine max HOM05D004937 ORTHO05D006414 4.4e-78 295.8 272 53.3
Gohir.A06G207300 Gossypium hirsutum HOM05D004937 ORTHO05D006414 4.4e-78 295.8 272 55.9
Gohir.D06G214000 Gossypium hirsutum HOM05D004937 ORTHO05D006414 7.5e-78 295.0 272 56.2
Gorai.010G252100 Gossypium raimondii HOM05D004937 ORTHO05D006414 7.5e-78 295.0 272 56.2
Manes.16G005800 Manihot esculenta HOM05D004937 ORTHO05D006414 7.5e-78 295.0 287 51.6
TPR.G22185 Trifolium pratense HOM05D004937 ORTHO05D006414 9.8e-78 294.7 270 54.1
Nn1g07169 Nelumbo nucifera HOM05D004937 ORTHO05D006414 2.9e-77 293.1 278 55.4
Haze_06813 Corylus avellana HOM05D004937 ORTHO05D006414 3.7e-77 292.7 272 55.1
Phvul.003G080000 Phaseolus vulgaris HOM05D004937 ORTHO05D006414 3.7e-77 292.7 271 53.9
QL05p072835 Quercus lobata HOM05D004937 ORTHO05D006414 4.9e-77 292.4 271 54.6
vmacro15793 Vaccinium macrocarpon HOM05D004937 ORTHO05D006414 1.4e-76 290.8 270 54.4
PSO541G5924 Papaver somniferum HOM05D004937 ORTHO05D006414 2.4e-76 290.0 276 52.9
VMungo1215G2760 Vigna mungo HOM05D004937 ORTHO05D006414 3.2e-76 289.7 266 53.4
Aqoxy1G02086 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 4.1e-76 289.3 265 54.0
CSS0033735 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 4.1e-76 289.3 275 54.9
CiPaw.09G093200 Carya illinoinensis HOM05D004937 ORTHO05D006414 4.1e-76 289.3 271 53.5
Rhsim02G0106300 Rhododendron simsii HOM05D004937 ORTHO05D006414 4.1e-76 289.3 270 55.2
Lj1A1232T94 Lonicera japonica HOM05D004937 ORTHO05D006414 5.4e-76 288.9 270 55.6
PSO675G1521 Papaver somniferum HOM05D004937 ORTHO05D006414 9.2e-76 288.1 276 52.5
TAR624G0274 Trochodendron aralioides HOM05D004937 ORTHO05D006414 9.2e-76 288.1 274 54.7
EL10Ac8g20076 Beta vulgaris HOM05D004937 ORTHO05D006414 1.6e-75 287.3 270 53.3
Cc09_g01540 Coffea canephora HOM05D004937 ORTHO05D000904 1.6e-75 287.3 270 53.3
CANSAT56G3877 Cannabis sativa HOM05D004937 ORTHO05D006414 2.1e-75 287.0 273 53.8
Eucgr.D01342 Eucalyptus grandis HOM05D004937 ORTHO05D006414 2.1e-75 287.0 271 53.9
Medtr4g132300 Medicago truncatula HOM05D004937 ORTHO05D006414 4.6e-75 285.8 272 52.9
Ciclev10014440m.g Citrus clementina HOM05D004937 ORTHO05D006414 6.0e-75 285.4 272 53.7
Glyma.07G261700 Glycine max HOM05D004937 ORTHO05D006414 7.8e-75 285.0 272 51.8
GSVIVG01012711001 Vitis vinifera HOM05D004937 ORTHO05D000904 1.7e-74 283.9 272 54.0
Prupe.4G019000 Prunus persica HOM05D004937 ORTHO05D006414 2.3e-74 283.5 273 53.5
THA.LOC104809500 Tarenaya hassleriana HOM05D004937 ORTHO05D006414 2.3e-74 283.5 286 52.1
Aa31LG1G2970 Aethionema arabicum HOM05D004937 ORTHO05D006414 3.0e-74 283.1 272 54.4
COL.COLO4_31792 Corchorus olitorius HOM05D004937 ORTHO05D006414 3.0e-74 283.1 271 53.5
DCAR_024931 Daucus carota HOM05D004937 ORTHO05D006414 3.0e-74 283.1 271 54.2
Lj4g0022599 Lotus japonicus HOM05D004937 ORTHO05D006414 6.6e-74 282.0 296 49.0
MD10G1323300 Malus domestica HOM05D004937 ORTHO05D006414 6.6e-74 282.0 273 53.1
PGR042G1615 Punica granatum HOM05D004937 ORTHO05D006414 8.6e-74 281.6 271 54.6
AL1G22990 Arabidopsis lyrata HOM05D004937 ORTHO05D006414 1.1e-73 281.2 269 53.2
Lalb_Chr12g0196051 Lupinus albus HOM05D004937 ORTHO05D006414 1.1e-73 281.2 271 50.9
Hund23457 Selenicereus undatus HOM05D004937 ORTHO05D006414 1.1e-73 281.2 268 50.4
Sabra04G0005400 Salix brachista HOM05D004937 ORTHO05D006414 1.9e-73 280.4 270 53.3
Potri.004G010400 Populus trichocarpa HOM05D004937 ORTHO05D006414 2.5e-73 280.0 270 53.3
Migut.M01330 Erythranthe guttata HOM05D004937 ORTHO05D000904 9.5e-73 278.1 270 51.5
DCAR_028195 Daucus carota HOM05D004937 ORTHO05D006414 1.2e-72 277.7 270 53.3
PSO675G7903 Papaver somniferum HOM05D004937 ORTHO05D006414 1.2e-72 277.7 276 51.8
Sc24g0000210 Simmondsia chinensis HOM05D004937 ORTHO05D006414 3.6e-72 276.2 271 52.0
MSTRG.15996 Avicennia marina HOM05D004937 ORTHO05D006414 6.2e-72 275.4 268 50.7
Carub.0001s1147 Capsella rubella HOM05D004937 ORTHO05D006414 8.1e-72 275.0 271 50.9
Ca_21076_v3 Cicer arietinum L. HOM05D004937 ORTHO05D006414 1.4e-71 274.2 313 47.0
PSO017G1772 Papaver somniferum HOM05D004937 ORTHO05D006414 1.4e-71 274.2 282 51.4
PSO541G2704 Papaver somniferum HOM05D004937 ORTHO05D006414 1.4e-71 274.2 276 51.1
Cpa.g.sc152.26 Carica papaya HOM05D004937 ORTHO05D006414 2.3e-71 273.5 269 51.7
AT1G11800 Arabidopsis thaliana HOM05D004937 ORTHO05D006414 4.0e-71 272.7 269 52.0
BcaB08g37429 Brassica carinata HOM05D004937 ORTHO05D006414 8.9e-71 271.6 272 51.1
Peaxi162Scf00394g00019 Petunia axillaris HOM05D004937 ORTHO05D006414 8.9e-71 271.6 269 52.8
Sp1g10430 Schrenkiella parvula HOM05D004937 ORTHO05D006414 8.9e-71 271.6 272 52.6
MELO3C002448.2 Cucumis melo HOM05D004937 ORTHO05D006414 1.2e-70 271.2 269 50.6
Thhalv10006713m.g Eutrema salsugineum HOM05D004937 ORTHO05D000904 1.2e-70 271.2 272 53.3
HanXRQChr15g0470651 Helianthus annuus HOM05D004937 ORTHO05D006414 1.2e-70 271.2 268 51.9
RcHm_v2.0_Chr5g0002731 Rosa chinensis HOM05D004937 ORTHO05D006414 1.5e-70 270.8 272 52.2
AUR62021933 Chenopodium quinoa HOM05D004937 ORTHO05D006414 3.4e-70 269.6 320 45.6
ECA236G0630 Erigeron canadensis HOM05D004937 ORTHO05D006414 3.4e-70 269.6 276 51.1
C08p47960 Brassica napus HOM05D004937 ORTHO05D006414 4.4e-70 269.2 272 50.0
BolC8t52333H Brassica oleracea HOM05D004937 ORTHO05D006414 4.4e-70 269.2 272 50.0
CARHR012140 Cardamine hirsuta HOM05D004937 ORTHO05D006414 7.5e-70 268.5 272 52.6
HPP92_014181 Vanilla planifolia HOM05D004937 ORTHO05D006414 9.9e-70 268.1 366 44.3
BraA09t41776Z Brassica rapa HOM05D004937 ORTHO05D006414 1.7e-69 267.3 272 50.0
SEGI_33731 Sequoiadendron giganteum HOM05D004937 ORTHO05D006414 1.7e-69 267.3 267 48.7
HPP92_001597 Vanilla planifolia HOM05D004937 ORTHO05D006414 1.7e-69 267.3 269 50.6
CsaV3_1G010670 Cucumis sativus L. HOM05D004937 ORTHO05D006414 2.2e-69 266.9 270 48.9
FAN21G0664 Fragaria x ananassa HOM05D004937 ORTHO05D006414 2.9e-69 266.5 272 52.2
Nitab4.5_0011734g0010 Nicotiana tabacum HOM05D004937 ORTHO05D006414 2.9e-69 266.5 283 49.8
ATR0794G089 Amborella trichopoda HOM05D004937 ORTHO05D006414 3.7e-69 266.2 278 47.8
AUR62012723 Chenopodium quinoa HOM05D004937 ORTHO05D006414 3.7e-69 266.2 270 50.0
SalBow8G2768 Salvia bowleyana HOM05D004937 ORTHO05D006414 3.7e-69 266.2 334 45.5
Sed0026378 Sechium edule HOM05D004937 ORTHO05D006414 3.7e-69 266.2 271 49.1
FvH4_3g01860 Fragaria vesca HOM05D004937 ORTHO05D006414 1.1e-68 264.6 272 51.1
HPP92_001591 Vanilla planifolia HOM05D004937 ORTHO05D006414 1.1e-68 264.6 269 49.8
Sopen02g011270 Solanum pennellii HOM05D004937 ORTHO05D006414 1.4e-68 264.2 283 49.5
Nitab4.5_0000005g0300 Nicotiana tabacum HOM05D004937 ORTHO05D006414 1.9e-68 263.8 283 49.8
Peaxi162Scf00307g01425 Petunia axillaris HOM05D004937 ORTHO05D006414 1.9e-68 263.8 269 51.7
Haze_06812 Corylus avellana HOM05D004937 ORTHO05D006414 2.4e-68 263.5 270 53.0
PGSC0003DMG400019871 Solanum tuberosum HOM05D004937 ORTHO05D006414 4.1e-68 262.7 283 49.1
Lsat_1_v5_gn_7_16360 Lactuca sativa HOM05D004937 ORTHO05D006414 7.1e-68 261.9 275 50.5
BcaC07g41758 Brassica carinata HOM05D004937 ORTHO05D006414 9.2e-68 261.5 270 49.3
Dinv13907 Davidia involucrata HOM05D004937 ORTHO05D006414 1.6e-67 260.8 269 49.8
Solyc02g032870.4 Solanum lycopersicum HOM05D004937 ORTHO05D006414 2.7e-67 260.0 283 48.8
QL05p072858 Quercus lobata HOM05D004937 ORTHO05D006414 4.6e-67 259.2 270 51.1
HanXRQChr05g0129391 Helianthus annuus HOM05D004937 ORTHO05D006414 7.8e-67 258.5 281 50.9
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 1.7e-66 257.3 266 49.2
unitig_748.g7590 Utricularia gibba HOM05D004937 ORTHO05D006414 2.3e-66 256.9 312 44.9
Pp3c20_16850 Physcomitrium patens HOM05D004937 ORTHO05D006414 1.5e-65 254.2 269 46.5
Dinv20060 Davidia involucrata HOM05D004937 ORTHO05D006414 2.5e-65 253.4 285 47.0
SMO361G0593 Selaginella moellendorffii HOM05D004937 ORTHO05D006414 9.5e-65 251.5 266 48.1
Os12g0414900 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 8.1e-64 248.4 270 46.7
Hma1.2p1_3370F.1_g335650 Hydrangea macrophylla HOM05D004937 ORTHO05D006414 1.4e-63 247.7 258 48.4
Zm00001eb043220 Zea mays HOM05D004937 ORTHO05D006414 1.2e-62 244.6 268 47.4
QL05p072840 Quercus lobata HOM05D004937 ORTHO05D006414 4.4e-62 242.7 273 49.5
Mapoly0028s0073 Marchantia polymorpha HOM05D004937 ORTHO05D006414 1.9e-60 237.3 270 43.7
Migut.M01331 Erythranthe guttata HOM05D004937 ORTHO05D006414 2.4e-60 236.9 261 48.3
Ah.14g087960 Amaranthus hybridus HOM05D004937 ORTHO05D006414 2.1e-59 233.8 268 45.9
AagrBONN_evm.TU.Sc2ySwM_368.2060 Anthoceros agrestis HOM05D004937 ORTHO05D006414 4.6e-59 232.6 250 47.2
Potri.004G010900 Populus trichocarpa HOM05D004937 ORTHO05D006414 4.3e-57 226.1 271 47.6
CDE02G2441 Ceratophyllum demersum HOM05D004937 ORTHO05D006414 7.3e-57 225.3 312 41.7
Sed0013617 Sechium edule HOM05D004937 ORTHO05D006414 4.7e-56 222.6 238 48.7
CBR_g38366 Chara braunii HOM05D004937 ORTHO05D006414 1.7e-53 214.2 322 40.1
SHI02217 Sapria himalayana HOM05D004937 ORTHO05D006414 2.1e-48 197.2 334 37.4
ClCG03G004640 Citrullus lanatus HOM05D004937 ORTHO05D006414 7.6e-46 188.7 194 50.5
CSS0005056 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 1.1e-44 184.9 177 53.1
CSS0029720 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 1.6e-43 181.0 344 38.4
Zm00001eb048580 Zea mays HOM05D004937 ORTHO05D006414 3.5e-43 179.9 176 52.3
CSS0048087 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 2.1e-40 170.6 339 36.6
Dinv13906 Davidia involucrata HOM05D004937 ORTHO05D006414 8.1e-40 168.7 266 38.7
QL05p072848 Quercus lobata HOM05D004937 ORTHO05D006414 8.7e-34 148.7 135 51.9
BcaB08g37427 Brassica carinata HOM05D004937 ORTHO05D006414 1.5e-33 147.9 131 53.4
Cre06.g305050 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 1.9e-33 147.5 308 34.1
BcaB08g37425 Brassica carinata HOM05D004937 ORTHO05D006414 2.4e-31 140.6 133 52.6
Psat6g178560 Pisum sativum HOM05D004937 ORTHO05D006414 1.3e-29 134.8 141 51.1
MCO11G820 Micromonas commoda HOM05D004937 ORTHO05D006414 1.7e-29 134.4 293 32.1
Dinv13905 Davidia involucrata HOM05D004937 ORTHO05D006414 8.7e-26 122.1 100 58.0
PRCOL_00004553 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 3.3e-25 120.2 293 33.4
Cre06.g305250 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 5.0e-21 106.3 284 29.2
AagrBONN_evm.TU.Sc2ySwM_368.2061 Anthoceros agrestis HOM05D004937 ORTHO05D006414 5.5e-20 102.8 119 45.4
Mapoly0074s0008 Marchantia polymorpha HOM05D004937 ORTHO05D006414 1.8e-18 97.8 255 28.6
Lj2C267G4 Lonicera japonica HOM05D004937 ORTHO05D006414 3.9e-18 96.7 96 47.9
BcaB08g37428 Brassica carinata HOM05D004937 ORTHO05D006414 8.8e-18 95.5 71 59.2
Dinv13904 Davidia involucrata HOM05D004937 ORTHO05D006414 2.2e-16 90.9 65 63.1
ClCG03G004650 Citrullus lanatus HOM05D000020 ORTHO05D000904 4.8e-16 89.7 83 47.0
Os07g0510800 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 2.2e-08 64.3 64 51.6
Os10g0401100 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 2.8e-08 63.9 52 51.9
Cre12.g521600 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D145370 5.3e-07 59.7 273 23.4
PSO832G4260 Papaver somniferum HOM05D004937 ORTHO05D002819 9.1e-07 58.9 61 45.9
Dinv30719 Davidia involucrata HOM05D004937 ORTHO05D006414 4.5e-06 56.6 70 42.9


User provided reference genes

Program Settings