Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G00731 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 1.4e-193 679.5 362 100.0
TAR627G0112 Trochodendron aralioides HOM05D005116 ORTHO05D005937 8.4e-85 318.2 421 48.7
TAR629G1139 Trochodendron aralioides HOM05D005116 ORTHO05D005937 2.7e-83 313.2 417 47.7
GSVIVG01020569001 Vitis vinifera HOM05D005116 ORTHO05D005937 1.5e-78 297.4 390 49.5
PSO832G2322 Papaver somniferum HOM05D005116 ORTHO05D005937 7.6e-78 295.0 374 50.3
PSO210G2339 Papaver somniferum HOM05D005116 ORTHO05D005937 1.6e-75 287.3 385 49.1
Gorai.002G019600 Gossypium raimondii HOM05D005116 ORTHO05D005937 1.3e-72 277.7 394 47.2
MD09G1244900 Malus domestica HOM05D005116 ORTHO05D005937 4.8e-72 275.8 379 46.7
Thecc.06G001400 Theobroma cacao HOM05D005116 ORTHO05D005937 1.4e-71 274.2 397 46.1
MBI07_g40350_MAGBIO Magnolia biondii HOM05D005116 ORTHO05D005937 6.9e-71 271.9 384 46.9
COL.COLO4_05946 Corchorus olitorius HOM05D005116 ORTHO05D005937 1.2e-70 271.2 400 45.5
Duzib052G0489 Durio zibethinus HOM05D005116 ORTHO05D005937 7.6e-70 268.5 404 47.0
Phvul.011G115315 Phaseolus vulgaris HOM05D005116 ORTHO05D005937 7.6e-70 268.5 371 49.9
Gohir.D01G017400 Gossypium hirsutum HOM05D005116 ORTHO05D005937 2.2e-69 266.9 404 45.8
Lalb_Chr03g0029531 Lupinus albus HOM05D005116 ORTHO05D005937 1.1e-68 264.6 388 44.3
arahy.Tifrunner.gnm1.ann1.3GE2A8 Arachis hypogaea HOM05D005116 ORTHO05D005937 1.9e-68 263.8 383 48.3
Gohir.A01G018800 Gossypium hirsutum HOM05D005116 ORTHO05D005937 1.9e-68 263.8 406 45.3
Actinidia11017 Actinidia chinensis HOM05D005116 ORTHO05D005937 2.5e-68 263.5 405 44.2
TWI59G1245 Tripterygium wilfordii HOM05D005116 ORTHO05D005937 2.5e-68 263.5 429 43.8
Potri.017G012500 Populus trichocarpa HOM05D005116 ORTHO05D005937 4.2e-68 262.7 399 45.1
arahy.Tifrunner.gnm1.ann1.KES1NF Arachis hypogaea HOM05D005116 ORTHO05D005937 5.5e-68 262.3 383 48.0
Dinv13395 Davidia involucrata HOM05D005116 ORTHO05D005937 5.5e-68 262.3 405 46.4
CSS0036411 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 7.1e-68 261.9 406 45.3
CsaV3_6G012810 Cucumis sativus L. HOM05D005116 ORTHO05D005937 9.3e-68 261.5 376 46.5
Glyma.12G116000 Glycine max HOM05D005116 ORTHO05D005937 9.3e-68 261.5 380 45.3
Eucgr.A01831 Eucalyptus grandis HOM05D005116 ORTHO05D005937 2.1e-67 260.4 384 45.3
FvH4_5g30750 Fragaria vesca HOM05D005116 ORTHO05D005937 3.5e-67 259.6 372 45.4
CSS0044850 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 3.0e-66 256.5 421 44.2
Sed0010367 Sechium edule HOM05D005116 ORTHO05D005937 8.7e-66 255.0 382 45.8
Ciclev10015278m.g Citrus clementina HOM05D005116 ORTHO05D005937 1.1e-65 254.6 418 43.5
Sopen07g027830 Solanum pennellii HOM05D005116 ORTHO05D005937 4.3e-65 252.7 376 47.6
Atru.chr6.2899 Acer truncatum HOM05D005116 ORTHO05D005937 5.7e-65 252.3 217 63.1
RcHm_v2.0_Chr7g0225641 Rosa chinensis HOM05D005116 ORTHO05D005937 9.7e-65 251.5 372 46.5
Cpa.g.sc83.62 Carica papaya HOM05D005116 ORTHO05D005937 1.3e-64 251.1 420 42.6
MELO3C013631.2 Cucumis melo HOM05D005116 ORTHO05D005937 3.7e-64 249.6 376 45.2
Solyc07g053860.3 Solanum lycopersicum HOM05D005116 ORTHO05D005937 3.7e-64 249.6 365 46.6
Aqoxy4G00799 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 4.8e-64 249.2 243 64.6
Manes.13G144900 Manihot esculenta HOM05D005116 ORTHO05D005937 6.3e-64 248.8 457 41.6
Ciclev10015471m.g Citrus clementina HOM05D005116 ORTHO05D005937 8.2e-64 248.4 229 61.6
VMungo1127G1891 Vigna mungo HOM05D005116 ORTHO05D005937 8.2e-64 248.4 363 45.7
RcHm_v2.0_Chr4g0410421 Rosa chinensis HOM05D005116 ORTHO05D005937 1.1e-63 248.1 370 45.4
RhsimUnG0145200 Rhododendron simsii HOM05D005116 ORTHO05D005937 2.4e-63 246.9 431 41.8
FAN13G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 3.1e-63 246.5 402 42.8
DCAR_013025 Daucus carota HOM05D005116 ORTHO05D005937 6.9e-63 245.4 230 59.1
Duzib248G1083 Durio zibethinus HOM05D005116 ORTHO05D005937 6.9e-63 245.4 427 42.4
Rhsim06G0139500 Rhododendron simsii HOM05D005116 ORTHO05D005937 1.2e-62 244.6 425 40.7
CiPaw.03G178700 Carya illinoinensis HOM05D005116 ORTHO05D005937 1.5e-62 244.2 426 42.3
Prupe.4G278300 Prunus persica HOM05D005116 ORTHO05D005937 2.6e-62 243.4 283 51.9
CANSAT64G0665 Cannabis sativa HOM05D005116 ORTHO05D005937 3.4e-62 243.0 388 44.6
HPP92_007017 Vanilla planifolia HOM05D005116 ORTHO05D005937 4.5e-62 242.7 400 43.2
AUR62029845 Chenopodium quinoa HOM05D005116 ORTHO05D005937 5.9e-62 242.3 391 44.8
EL10Ac5g11143 Beta vulgaris HOM05D005116 ORTHO05D005937 1.3e-61 241.1 364 44.2
PGR042G3305 Punica granatum HOM05D005116 ORTHO05D005937 1.7e-61 240.7 398 45.7
ClCG02G017750 Citrullus lanatus HOM05D005116 ORTHO05D005937 3.8e-61 239.6 377 45.6
Hund01029 Selenicereus undatus HOM05D005116 ORTHO05D005937 1.4e-60 237.7 247 57.1
Sc09g0004750 Simmondsia chinensis HOM05D005116 ORTHO05D005937 1.2e-59 234.6 361 46.0
Ca_18939_v3 Cicer arietinum L. HOM05D005116 ORTHO05D005937 1.6e-59 234.2 366 44.8
FAN18G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 4.6e-59 232.6 355 44.5
Lj3g0009567 Lotus japonicus HOM05D005116 ORTHO05D005937 6.1e-59 232.3 423 41.4
ATR0763G277 Amborella trichopoda HOM05D005116 ORTHO05D005937 1.0e-58 231.5 229 57.2
HanXRQChr16g0525341 Helianthus annuus HOM05D005116 ORTHO05D005937 1.0e-58 231.5 391 41.4
Sc09g0006700 Simmondsia chinensis HOM05D005116 ORTHO05D005937 1.0e-58 231.5 287 49.5
Migut.M00082 Erythranthe guttata HOM05D005116 ORTHO05D005937 3.0e-58 229.9 359 43.7
ECA234G2480 Erigeron canadensis HOM05D005116 ORTHO05D005937 2.5e-57 226.9 404 38.4
HanXRQChr15g0470251 Helianthus annuus HOM05D005116 ORTHO05D005937 3.3e-57 226.5 390 40.3
Ah.09g227990 Amaranthus hybridus HOM05D005116 ORTHO05D005937 5.7e-57 225.7 201 60.2
unitig_748.g8536 Utricularia gibba HOM05D005116 ORTHO05D005937 6.3e-56 222.2 358 42.2
THA.LOC104801168 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 1.1e-55 221.5 230 55.2
Cc00_g12320 Coffea canephora HOM05D005116 ORTHO05D005937 3.1e-55 219.9 213 57.7
CAN.G209.35 Capsicum annuum HOM05D005116 ORTHO05D005937 5.9e-54 215.7 384 43.2
SalBow7G1661 Salvia bowleyana HOM05D002934 ORTHO05D003937 2.9e-53 213.4 379 40.6
Sabra17G0010300 Salix brachista HOM05D005116 ORTHO05D005937 5.5e-52 209.1 207 56.5
Sp1g02620 Schrenkiella parvula HOM05D005116 ORTHO05D005937 5.5e-52 209.1 416 39.2
Carub.0001s0286 Capsella rubella HOM05D005116 ORTHO05D005937 9.4e-52 208.4 410 38.8
Lj8A109T77 Lonicera japonica HOM05D005116 ORTHO05D005937 2.1e-51 207.2 320 46.9
Aa31LG1G8970 Aethionema arabicum HOM05D005116 ORTHO05D005937 3.6e-51 206.5 413 39.2
Thhalv10007808m.g Eutrema salsugineum HOM05D005116 ORTHO05D005937 7.9e-51 205.3 403 40.2
SGA_v2.0_scaffold108G30901 Striga asiatica HOM05D005116 ORTHO05D005937 7.9e-51 205.3 355 40.0
THA.LOC104826035 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 1.0e-50 204.9 233 53.2
SEGI_12795 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 2.3e-50 203.8 420 37.4
vmacro15911 Vaccinium macrocarpon HOM05D005116 ORTHO05D005937 5.1e-50 202.6 159 64.2
SEGI_15947 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 2.0e-49 200.7 229 49.8
QL08p039613 Quercus lobata HOM05D005116 ORTHO05D005937 4.4e-49 199.5 576 31.2
CARHR003090 Cardamine hirsuta HOM05D005116 ORTHO05D005937 7.4e-49 198.7 410 39.3
Oeu035627.2 Olea europaea HOM05D005116 ORTHO05D005937 1.3e-48 198.0 367 42.0
AT1G03760 Arabidopsis thaliana HOM05D005116 ORTHO05D005937 1.7e-48 197.6 409 37.9
Actinidia11090 Actinidia chinensis HOM05D005116 ORTHO05D005937 6.9e-47 192.2 365 38.6
Nitab4.5_0006721g0020 Nicotiana tabacum HOM05D005116 ORTHO05D005937 2.0e-46 190.7 379 40.6
Nitab4.5_0004959g0030 Nicotiana tabacum HOM05D005116 ORTHO05D005937 3.4e-46 189.9 367 39.5
Psat7g169080 Pisum sativum HOM05D005116 ORTHO05D005937 4.5e-46 189.5 382 40.6
Lsat_1_v5_gn_4_29780 Lactuca sativa HOM05D005116 ORTHO05D005937 1.0e-45 188.3 294 44.6
Medtr4g078505 Medicago truncatula HOM05D005116 ORTHO05D005937 3.8e-45 186.4 369 39.3
AUR62025873 Chenopodium quinoa HOM05D005116 ORTHO05D005937 4.2e-44 183.0 389 38.8
SMO115G0247 Selaginella moellendorffii HOM05D005116 ORTHO05D005937 4.7e-43 179.5 374 36.1
PSO478G3970 Papaver somniferum HOM05D005116 ORTHO05D005937 3.9e-42 176.4 207 52.7
Haze_13200 Corylus avellana HOM05D005116 ORTHO05D005937 2.0e-41 174.1 264 43.9
AL1G13310 Arabidopsis lyrata HOM05D005116 ORTHO05D005937 9.7e-41 171.8 428 34.6
Pp3c13_17680 Physcomitrium patens HOM05D005116 ORTHO05D005937 1.3e-40 171.4 211 47.4
TPR.G29254 Trifolium pratense HOM05D005116 ORTHO05D005937 1.3e-40 171.4 173 55.5
BcaNung07372 Brassica carinata HOM05D005116 ORTHO05D005937 1.4e-39 167.9 384 35.7
C05p02100 Brassica napus HOM05D005116 ORTHO05D005937 2.4e-39 167.2 376 36.4
BraA10t42497Z Brassica rapa HOM05D005116 ORTHO05D005937 2.4e-39 167.2 379 35.4
CDE02G0148 Ceratophyllum demersum HOM05D005116 ORTHO05D005937 7.0e-39 165.6 137 60.6
BcaC05g24513 Brassica carinata HOM05D005116 ORTHO05D005937 9.1e-39 165.2 376 35.6
BolC5t28987H Brassica oleracea HOM05D005116 ORTHO05D005937 9.1e-39 165.2 376 35.6
Mapoly0076s0049 Marchantia polymorpha HOM05D005116 ORTHO05D005937 6.5e-37 159.1 254 40.6
AUR62034810 Chenopodium quinoa HOM05D005116 ORTHO05D005937 1.1e-36 158.3 232 44.0
Zm00001eb142460 Zea mays HOM05D005116 ORTHO05D005937 3.2e-36 156.8 371 37.2
AagrBONN_evm.TU.Sc2ySwM_344.4439 Anthoceros agrestis HOM05D005116 ORTHO05D005937 4.0e-34 149.8 208 49.5
CBR_g73964 Chara braunii HOM05D005116 ORTHO05D005937 9.1e-31 138.7 224 40.6
BcaC02g07427 Brassica carinata HOM05D005116 ORTHO05D005937 1.9e-28 131.0 132 50.0
A10p02290 Brassica napus HOM05D005116 ORTHO05D005937 1.9e-28 131.0 295 37.3
C04p67500 Brassica napus HOM05D005116 ORTHO05D005937 1.2e-27 128.3 333 33.3
Peaxi162Scf01415g00032 Petunia axillaris HOM05D005116 ORTHO05D005937 2.3e-26 124.0 366 32.5
AagrBONN_evm.TU.Sc2ySwM_368.1082 Anthoceros agrestis HOM05D005116 ORTHO05D005937 8.8e-26 122.1 130 51.5
Gorai.005G200500 Gossypium raimondii HOM05D005116 ORTHO05D005937 1.2e-25 121.7 325 35.4
BolC4t28247H Brassica oleracea HOM05D005116 ORTHO05D005937 3.1e-23 113.6 318 32.7
Glyma.12G137500 Glycine max HOM05D005116 ORTHO05D005937 5.9e-22 109.4 79 69.6
Nitab4.5_0001752g0050 Nicotiana tabacum HOM05D005116 ORTHO05D005937 1.7e-21 107.8 82 67.1
Gohir.D02G178750 Gossypium hirsutum HOM05D005116 ORTHO05D005937 2.5e-20 104.0 226 37.6
Os01g0928300 Oryza sativa ssp. japonica HOM05D005116 ORTHO05D005937 3.3e-20 103.6 92 59.8
Gohir.A03G155650 Gossypium hirsutum HOM05D005116 ORTHO05D005937 1.2e-17 95.1 191 38.7
Nitab4.5_0000638g0150 Nicotiana tabacum HOM05D005116 ORTHO05D005937 7.0e-15 85.9 119 42.0
BcaB06g29108 Brassica carinata HOM05D005116 ORTHO05D005937 1.2e-14 85.1 279 31.9
MSTRG.25027 Avicennia marina HOM05D005116 ORTHO05D005937 2.0e-14 84.3 232 37.1
C08p00750 Brassica napus HOM05D005116 ORTHO05D031782 1.0e-13 82.0 306 30.1
Zm00001eb363750 Zea mays HOM05D005116 ORTHO05D005937 5.0e-13 79.7 294 31.3
C03p22830 Brassica napus HOM05D000229 ORTHO05D005937 1.1e-12 78.6 109 40.4
Lj8C109T10 Lonicera japonica HOM05D005116 ORTHO05D005937 2.5e-12 77.4 68 52.9
Cre13.g576350 Chlamydomonas reinhardtii HOM05D005116 ORTHO05D005937 1.2e-11 75.1 151 35.8
BcaC07g36947 Brassica carinata HOM05D005116 ORTHO05D005937 2.1e-11 74.3 186 32.3
Oeu044722.1 Olea europaea HOM05D005116 ORTHO05D005937 2.1e-11 74.3 190 32.6
BcaC07g36946 Brassica carinata HOM05D005116 ORTHO05D031782 8.0e-11 72.4 295 28.8
arahy.Tifrunner.gnm1.ann1.13T34P Arachis hypogaea HOM05D000168 ORTHO05D000811 6.4e-08 62.8 56 55.4
Oeu023568.1 Olea europaea HOM05D005116 ORTHO05D005937 8.3e-08 62.4 48 58.3
BcaC03g18340 Brassica carinata HOM05D005116 ORTHO05D005937 7.0e-07 59.3 89 37.1
BcaC01g05723 Brassica carinata HOM05D005116 ORTHO05D005937 1.6e-06 58.2 87 36.8
C04p61610 Brassica napus HOM05D000171 ORTHO05D000101 1.6e-06 58.2 87 36.8
BolC2t12481H Brassica oleracea HOM05D005116 ORTHO05D005937 2.0e-06 57.8 85 37.6
arahy.Tifrunner.gnm1.ann1.FT3874 Arachis hypogaea HOM05D000168 ORTHO05D000811 2.7e-06 57.4 52 51.9
Glyma.19G101401 Glycine max HOM05D000147 ORTHO05D005937 3.5e-06 57.0 27 92.6


User provided reference genes

Program Settings