Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G00682 Aquilegia oxysepala HOM05D000184 ORTHO05D000032 1.1e-53 213.0 102 100.0
Aqoxy4G02336 Aquilegia oxysepala HOM05D000184 ORTHO05D000032 6.8e-24 114.0 95 61.1
Aqoxy4G02335 Aquilegia oxysepala HOM05D000184 ORTHO05D000032 1.6e-20 102.8 95 57.9
Aqoxy3G02450 Aquilegia oxysepala HOM05D000184 ORTHO05D000032 7.8e-20 100.5 93 59.1
COL.COLO4_31963 Corchorus olitorius HOM05D000184 ORTHO05D000032 6.8e-08 60.8 72 50.0
Duzib192G0120 Durio zibethinus HOM05D000184 ORTHO05D000032 2.6e-07 58.9 45 60.0
Lj6A558G54 Lonicera japonica HOM05D000184 ORTHO05D000032 2.6e-07 58.9 36 69.4
Oeu015950.1 Olea europaea HOM05D000184 ORTHO05D000032 2.6e-07 58.9 36 69.4
Ciclev10016073m.g Citrus clementina HOM05D000184 ORTHO05D000032 4.4e-07 58.2 39 66.7
Aqoxy2G03875 Aquilegia oxysepala HOM05D000184 ORTHO05D000032 5.8e-07 57.8 40 65.0
ECA233G3792 Erigeron canadensis HOM05D000184 ORTHO05D000032 5.8e-07 57.8 36 66.7
HanXRQChr02g0058891 Helianthus annuus HOM05D000184 ORTHO05D000032 5.8e-07 57.8 36 66.7
Thecc.06G244200 Theobroma cacao HOM05D000184 ORTHO05D000032 5.8e-07 57.8 72 48.6
TWI53G1571 Tripterygium wilfordii HOM05D000184 ORTHO05D000032 5.8e-07 57.8 36 69.4
Actinidia33190 Actinidia chinensis HOM05D000184 ORTHO05D000032 1.3e-06 56.6 36 66.7
Actinidia35867 Actinidia chinensis HOM05D000184 ORTHO05D000032 1.3e-06 56.6 36 66.7
CDE07G0999 Ceratophyllum demersum HOM05D001237 ORTHO05D001827 1.3e-06 56.6 65 46.2
DCAR_026609 Daucus carota HOM05D000184 ORTHO05D000032 1.3e-06 56.6 35 68.6
ECA248G1259 Erigeron canadensis HOM05D000003 ORTHO05D000004 1.3e-06 56.6 36 66.7
HanXRQChr01g0022251 Helianthus annuus HOM05D000184 ORTHO05D000032 1.3e-06 56.6 36 66.7
Lsat_1_v5_gn_1_72761 Lactuca sativa HOM05D000184 ORTHO05D000032 1.3e-06 56.6 36 66.7
Medtr1g090670 Medicago truncatula HOM05D000184 ORTHO05D000032 1.3e-06 56.6 61 44.3
PSO210G1551 Papaver somniferum HOM05D000184 ORTHO05D000032 1.3e-06 56.6 36 66.7
PSO210G2171 Papaver somniferum HOM05D000184 ORTHO05D000032 1.3e-06 56.6 36 66.7
Actinidia19879 Actinidia chinensis HOM05D000184 ORTHO05D000032 1.7e-06 56.2 38 65.8
Lsat_1_v5_gn_6_60361 Lactuca sativa HOM05D000184 ORTHO05D000032 1.7e-06 56.2 36 63.9
Atru.chr1.2209 Acer truncatum HOM05D000184 ORTHO05D000032 2.2e-06 55.8 36 66.7
Lalb_Chr02g0151021 Lupinus albus HOM05D000184 ORTHO05D000032 2.2e-06 55.8 71 43.7
Sopen04g007370 Solanum pennellii HOM05D000184 ORTHO05D000032 2.2e-06 55.8 42 57.1
MSTRG.14581 Avicennia marina HOM05D000184 ORTHO05D000032 2.9e-06 55.5 41 58.5
BcaC05g29242 Brassica carinata HOM05D000184 ORTHO05D000032 2.9e-06 55.5 46 54.3
C05p55180 Brassica napus HOM05D000184 ORTHO05D000032 2.9e-06 55.5 46 54.3
BolC5t34186H Brassica oleracea HOM05D000184 ORTHO05D000032 2.9e-06 55.5 46 54.3
CAN.G1635.16 Capsicum annuum HOM05D000184 ORTHO05D000032 2.9e-06 55.5 36 66.7
FAN07G1513 Fragaria x ananassa HOM05D000184 ORTHO05D000032 2.9e-06 55.5 38 63.2
FAN17G2338 Fragaria x ananassa HOM05D000184 ORTHO05D000032 2.9e-06 55.5 38 63.2
Oeu018218.3 Olea europaea HOM05D000184 ORTHO05D000032 2.9e-06 55.5 36 66.7
PGR142G2963 Punica granatum HOM05D000184 ORTHO05D000032 2.9e-06 55.5 39 61.5
TAR626G1819 Trochodendron aralioides HOM05D000184 ORTHO05D000032 2.9e-06 55.5 36 66.7
Zm00001eb015490 Zea mays HOM05D000184 ORTHO05D000032 2.9e-06 55.5 78 42.3
Dinv14848 Davidia involucrata HOM05D000184 ORTHO05D000032 3.7e-06 55.1 45 60.0
Lj5g0022397 Lotus japonicus HOM05D000184 ORTHO05D000032 3.7e-06 55.1 36 63.9
Sc13g0000140 Simmondsia chinensis HOM05D000184 ORTHO05D000032 3.7e-06 55.1 36 66.7
TWI73G0641 Tripterygium wilfordii HOM05D000184 ORTHO05D000032 3.7e-06 55.1 36 63.9
AL7G42910 Arabidopsis lyrata HOM05D000184 ORTHO05D000032 4.9e-06 54.7 36 63.9
AT4G13640 Arabidopsis thaliana HOM05D000184 ORTHO05D000032 4.9e-06 54.7 36 63.9
MSTRG.16074 Avicennia marina HOM05D000184 ORTHO05D000032 4.9e-06 54.7 41 58.5
BcaB04g17663 Brassica carinata HOM05D000184 ORTHO05D000032 4.9e-06 54.7 36 63.9
BcaC07g37345 Brassica carinata HOM05D000184 ORTHO05D000032 4.9e-06 54.7 36 63.9
C08p07880 Brassica napus HOM05D000184 ORTHO05D000032 4.9e-06 54.7 36 63.9
BolC8t47639H Brassica oleracea HOM05D000184 ORTHO05D000032 4.9e-06 54.7 36 63.9
CSS0023963 Camellia sinensis var. sinensis HOM05D000184 ORTHO05D000032 4.9e-06 54.7 36 63.9
Carub.0007s2889 Capsella rubella HOM05D000184 ORTHO05D000032 4.9e-06 54.7 36 63.9
CARHR100080 Cardamine hirsuta HOM05D000184 ORTHO05D000032 4.9e-06 54.7 36 63.9
Cfa014918 Carpinus fangiana HOM05D000184 ORTHO05D000032 4.9e-06 54.7 36 66.7
CiPaw.02G066500 Carya illinoinensis HOM05D000184 ORTHO05D000032 4.9e-06 54.7 36 66.7
ClCG05G003320 Citrullus lanatus HOM05D000184 ORTHO05D000032 4.9e-06 54.7 36 66.7
Haze_11607 Corylus avellana HOM05D002843 ORTHO05D003086 4.9e-06 54.7 36 66.7
CsaV3_3G010950 Cucumis sativus L. HOM05D000184 ORTHO05D000032 4.9e-06 54.7 36 66.7
Thhalv10002625m.g Eutrema salsugineum HOM05D000184 ORTHO05D000032 4.9e-06 54.7 36 63.9
Thhalv10025876m.g Eutrema salsugineum HOM05D000184 ORTHO05D000032 4.9e-06 54.7 36 63.9
Sp7g11350 Schrenkiella parvula HOM05D000184 ORTHO05D000032 4.9e-06 54.7 36 63.9
Sed0003960 Sechium edule HOM05D000184 ORTHO05D000032 4.9e-06 54.7 36 66.7
Sed0020367 Sechium edule HOM05D000184 ORTHO05D000032 4.9e-06 54.7 34 70.6
TAR633G1219 Trochodendron aralioides HOM05D000184 ORTHO05D000032 4.9e-06 54.7 36 61.1
AL3G39150 Arabidopsis lyrata HOM05D000184 ORTHO05D000032 6.4e-06 54.3 36 63.9
AT3G24120 Arabidopsis thaliana HOM05D000184 ORTHO05D000032 6.4e-06 54.3 36 63.9
CSS0027631 Camellia sinensis var. sinensis HOM05D000184 ORTHO05D000032 6.4e-06 54.3 36 63.9
CAN.G1456.13 Capsicum annuum HOM05D000184 ORTHO05D000032 6.4e-06 54.3 36 63.9
MBI14_g12727_MAGBIO Magnolia biondii HOM05D000184 ORTHO05D000032 6.4e-06 54.3 37 59.5
MD05G1364200 Malus domestica HOM05D000184 ORTHO05D000032 6.4e-06 54.3 40 60.0
MD10G1342000 Malus domestica HOM05D000184 ORTHO05D000032 6.4e-06 54.3 40 60.0
Nn1g07652 Nelumbo nucifera HOM05D000184 ORTHO05D000032 6.4e-06 54.3 40 65.0
Nitab4.5_0000147g0130 Nicotiana tabacum HOM05D000184 ORTHO05D000032 6.4e-06 54.3 36 63.9
Nitab4.5_0001416g0010 Nicotiana tabacum HOM05D000184 ORTHO05D000032 6.4e-06 54.3 36 63.9
Nitab4.5_0001663g0280 Nicotiana tabacum HOM05D000184 ORTHO05D000032 6.4e-06 54.3 36 63.9
Oeu045307.1 Olea europaea HOM05D000184 ORTHO05D000032 6.4e-06 54.3 34 67.6
Solyc04g015290.3 Solanum lycopersicum HOM05D000184 ORTHO05D000032 6.4e-06 54.3 40 57.5
PGSC0003DMG400027229 Solanum tuberosum HOM05D000184 ORTHO05D000032 6.4e-06 54.3 40 57.5
SGA_v2.0_scaffold7G03655 Striga asiatica HOM05D000184 ORTHO05D000032 6.4e-06 54.3 41 58.5
TAR365G0168 Trochodendron aralioides HOM05D000184 ORTHO05D000032 6.4e-06 54.3 36 63.9
TAR636G2150 Trochodendron aralioides HOM05D000184 ORTHO05D000032 6.4e-06 54.3 36 63.9
CDE05G1165 Ceratophyllum demersum HOM05D000184 ORTHO05D000032 8.3e-06 53.9 36 61.1
Eucgr.H00055 Eucalyptus grandis HOM05D000184 ORTHO05D000032 8.3e-06 53.9 36 63.9
Hma1.2p1_1382F.1_g279430 Hydrangea macrophylla HOM05D000184 ORTHO05D000032 8.3e-06 53.9 34 67.6
Hma1.2p1_2176F.1_g316160 Hydrangea macrophylla HOM05D000184 ORTHO05D000032 8.3e-06 53.9 34 67.6
MBI15_g26852_MAGBIO Magnolia biondii HOM05D000184 ORTHO05D000032 8.3e-06 53.9 35 62.9
Medtr2g027800 Medicago truncatula HOM05D000184 ORTHO05D000032 8.3e-06 53.9 36 61.1
Peaxi162Scf00047g00522 Petunia axillaris HOM05D000184 ORTHO05D000032 8.3e-06 53.9 63 41.3
Psat1g096320 Pisum sativum HOM05D000184 ORTHO05D000032 8.3e-06 53.9 63 42.9
vmacro00478 Vaccinium macrocarpon HOM05D000184 ORTHO05D000032 8.3e-06 53.9 37 59.5


User provided reference genes

Program Settings