Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G00577 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 2.0e-41 172.6 95 100.0
Aqoxy2G00055 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 9.9e-28 127.1 65 98.5
Nn3g18894 Nelumbo nucifera HOM05D006682 ORTHO05D008627 5.3e-13 78.2 56 67.9
CDE04G1557 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 9.0e-13 77.4 52 73.1
MBI13_g31544_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 9.0e-13 77.4 58 69.0
CDE03G0115 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 2.6e-12 75.9 52 73.1
Sc16g0009700 Simmondsia chinensis HOM05D006682 ORTHO05D008627 1.4e-10 70.1 53 64.2
EL10Ac3g05849 Beta vulgaris HOM05D006682 ORTHO05D008627 2.4e-10 69.3 57 57.9
AUR62002207 Chenopodium quinoa HOM05D006072 ORTHO05D007363 2.4e-10 69.3 61 54.1
Lj3P268T21 Lonicera japonica HOM05D006682 ORTHO05D008627 2.4e-10 69.3 50 64.0
Lj1A355T5 Lonicera japonica HOM05D006682 ORTHO05D008627 3.2e-10 68.9 50 64.0
PSO384G2735 Papaver somniferum HOM05D006682 ORTHO05D008627 3.2e-10 68.9 55 61.8
CSS0008647 Camellia sinensis var. sinensis HOM05D006682 ORTHO05D008627 4.2e-10 68.6 54 68.5
THA.LOC104807019 Tarenaya hassleriana HOM05D006682 ORTHO05D008627 4.2e-10 68.6 54 64.8
A09p44960 Brassica napus HOM05D006682 ORTHO05D008627 7.1e-10 67.8 54 63.0
BraA09t39955Z Brassica rapa HOM05D006682 ORTHO05D008627 7.1e-10 67.8 54 63.0
BcaB01g00416 Brassica carinata HOM05D006682 ORTHO05D008627 9.3e-10 67.4 46 71.7
PSO339G5979 Papaver somniferum HOM05D006682 ORTHO05D008627 9.3e-10 67.4 55 60.0
CANSAT80G0450 Cannabis sativa HOM05D006682 ORTHO05D008627 1.2e-09 67.0 46 69.6
Thhalv10010653m.g Eutrema salsugineum HOM05D006682 ORTHO05D008627 1.2e-09 67.0 54 61.1
Sp5g10480 Schrenkiella parvula HOM05D006682 ORTHO05D008627 1.2e-09 67.0 54 61.1
AT3G51790 Arabidopsis thaliana HOM05D006682 ORTHO05D008627 1.6e-09 66.6 50 66.0
Rhsim13G0223700 Rhododendron simsii HOM05D006682 ORTHO05D008627 1.6e-09 66.6 51 64.7
unitig_26.g10134 Utricularia gibba HOM05D006682 ORTHO05D008627 1.6e-09 66.6 50 64.0
AL5G32250 Arabidopsis lyrata HOM05D006682 ORTHO05D008627 2.1e-09 66.2 48 66.7
Ah.13g066750 Amaranthus hybridus HOM05D006682 ORTHO05D008627 2.7e-09 65.9 55 58.2
SHI11277 Sapria himalayana HOM05D006682 ORTHO05D008627 2.7e-09 65.9 44 68.2
SGA_v2.0_scaffold42G16114 Striga asiatica HOM05D006682 ORTHO05D008627 2.7e-09 65.9 54 64.8
Thecc.05G010600 Theobroma cacao HOM05D006682 ORTHO05D008627 2.7e-09 65.9 44 72.7
Aa31sc655G20 Aethionema arabicum HOM05D006682 ORTHO05D008627 4.6e-09 65.1 46 65.2
MSTRG.18416 Avicennia marina HOM05D006682 ORTHO05D008627 4.6e-09 65.1 49 65.3
BcaB01g00476 Brassica carinata HOM05D006682 ORTHO05D008627 4.6e-09 65.1 54 61.1
C08p27040 Brassica napus HOM05D006682 ORTHO05D008627 4.6e-09 65.1 54 61.1
BolC8t50319H Brassica oleracea HOM05D006682 ORTHO05D008627 4.6e-09 65.1 54 61.1
MD11G1029300 Malus domestica HOM05D006682 ORTHO05D008627 4.6e-09 65.1 44 70.5
TAR623G0191 Trochodendron aralioides HOM05D006682 ORTHO05D008627 4.6e-09 65.1 59 55.9
TAR623G0396 Trochodendron aralioides HOM05D006682 ORTHO05D008627 4.6e-09 65.1 59 55.9
DCAR_014742 Daucus carota HOM05D006682 ORTHO05D008627 6.0e-09 64.7 55 65.5
Glyma.11G132200 Glycine max HOM05D006682 ORTHO05D008627 6.0e-09 64.7 44 70.5
Glyma.12G056800 Glycine max HOM05D006682 ORTHO05D008627 6.0e-09 64.7 44 70.5
CARHR161420 Cardamine hirsuta HOM05D006682 ORTHO05D008627 7.8e-09 64.3 59 55.9
ECA233G5908 Erigeron canadensis HOM05D006682 ORTHO05D008627 7.8e-09 64.3 58 56.9
MD03G1024200 Malus domestica HOM05D006682 ORTHO05D008627 7.8e-09 64.3 44 70.5
HPP92_017841 Vanilla planifolia HOM05D006682 ORTHO05D008627 7.8e-09 64.3 50 62.0
SGA_v2.0_scaffold4G02325 Striga asiatica HOM05D006682 ORTHO05D008627 1.0e-08 63.9 54 63.0
Dinv36276 Davidia involucrata HOM05D006682 ORTHO05D008627 1.3e-08 63.5 46 67.4
Duzib128G1702 Durio zibethinus HOM05D006682 ORTHO05D008627 1.3e-08 63.5 44 68.2
Migut.O00578 Erythranthe guttata HOM05D006682 ORTHO05D008627 1.3e-08 63.5 49 61.2
Manes.06G166600 Manihot esculenta HOM05D006682 ORTHO05D008627 1.3e-08 63.5 45 68.9
Sabra03G0151700 Salix brachista HOM05D006682 ORTHO05D008627 1.3e-08 63.5 50 66.0
Zm00001eb394030 Zea mays HOM05D006682 ORTHO05D008627 1.3e-08 63.5 48 62.5
arahy.Tifrunner.gnm1.ann1.11YZMF Arachis hypogaea HOM05D006682 ORTHO05D008627 2.3e-08 62.8 57 59.6
arahy.Tifrunner.gnm1.ann1.1N3H6Z Arachis hypogaea HOM05D006682 ORTHO05D008627 2.3e-08 62.8 57 59.6
Cfa009742 Carpinus fangiana HOM05D006682 ORTHO05D008627 2.3e-08 62.8 49 63.3
Haze_23101 Corylus avellana HOM05D006682 ORTHO05D008627 2.3e-08 62.8 49 63.3
Eucgr.B03679 Eucalyptus grandis HOM05D006682 ORTHO05D008627 2.3e-08 62.8 45 66.7
PGR102G2323 Punica granatum HOM05D006682 ORTHO05D008627 2.3e-08 62.8 46 65.2
Cpa.g.sc21.74 Carica papaya HOM05D006682 ORTHO05D008627 3.0e-08 62.4 55 56.4
COL.COLO4_14494 Corchorus olitorius HOM05D006682 ORTHO05D008627 3.0e-08 62.4 44 70.5
FvH4_3g43060 Fragaria vesca HOM05D006682 ORTHO05D008627 3.9e-08 62.0 47 63.8
FAN11G1823 Fragaria x ananassa HOM05D006682 ORTHO05D008627 3.9e-08 62.0 47 63.8
FAN16G2773 Fragaria x ananassa HOM05D006682 ORTHO05D008627 3.9e-08 62.0 43 69.8
FAN25G2895 Fragaria x ananassa HOM05D006682 ORTHO05D008627 3.9e-08 62.0 47 63.8
Lalb_Chr08g0245621 Lupinus albus HOM05D006682 ORTHO05D008627 3.9e-08 62.0 50 60.0
QL01p005270 Quercus lobata HOM05D006682 ORTHO05D008627 3.9e-08 62.0 44 65.9
Solyc03g033990.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 3.9e-08 62.0 55 58.2
Sopen03g006750 Solanum pennellii HOM05D006682 ORTHO05D008627 3.9e-08 62.0 55 58.2
Lj3g0017048 Lotus japonicus HOM05D006682 ORTHO05D008627 5.1e-08 61.6 53 64.2
Os10g0545800 Oryza sativa ssp. japonica HOM05D006682 ORTHO05D008627 5.1e-08 61.6 41 68.3
Phvul.011G058400 Phaseolus vulgaris HOM05D006682 ORTHO05D008627 5.1e-08 61.6 43 69.8
Prupe.6G023600 Prunus persica HOM05D006682 ORTHO05D008627 5.1e-08 61.6 45 64.4
RcHm_v2.0_Chr5g0077121 Rosa chinensis HOM05D006682 ORTHO05D008627 5.1e-08 61.6 47 63.8
VMungo1127G1130 Vigna mungo HOM05D006682 ORTHO05D008627 5.1e-08 61.6 42 71.4
ATR0605G320 Amborella trichopoda HOM05D006682 ORTHO05D008627 6.6e-08 61.2 43 72.1
CDE05G2085 Ceratophyllum demersum HOM05D004838 ORTHO05D005373 6.6e-08 61.2 35 88.6
ClCG03G013350 Citrullus lanatus HOM05D006682 ORTHO05D008627 6.6e-08 61.2 44 70.5
Lsat_1_v5_gn_8_74980 Lactuca sativa HOM05D006682 ORTHO05D008627 6.6e-08 61.2 57 54.4
SalBow5G1085 Salvia bowleyana HOM05D006682 ORTHO05D008627 8.7e-08 60.8 49 63.3
SalBow8G0417 Salvia bowleyana HOM05D006682 ORTHO05D008627 8.7e-08 60.8 49 63.3
Solyc09g005870.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 8.7e-08 60.8 44 65.9
Sopen09g001750 Solanum pennellii HOM05D006682 ORTHO05D008627 8.7e-08 60.8 44 65.9
PGSC0003DMG400009816 Solanum tuberosum HOM05D006682 ORTHO05D008627 8.7e-08 60.8 44 65.9
PGSC0003DMG400023913 Solanum tuberosum HOM05D006682 ORTHO05D008627 8.7e-08 60.8 44 65.9
Zm00001eb022720 Zea mays HOM05D006682 ORTHO05D008627 8.7e-08 60.8 48 60.4
CAN.G350.11 Capsicum annuum HOM05D006682 ORTHO05D008627 1.1e-07 60.5 44 65.9
FAN21G3201 Fragaria x ananassa HOM05D006682 ORTHO05D008627 1.1e-07 60.5 47 61.7
Gohir.A01G228400 Gossypium hirsutum HOM05D006682 ORTHO05D008627 1.1e-07 60.5 42 69.0
Gohir.D01G218300 Gossypium hirsutum HOM05D006682 ORTHO05D008627 1.1e-07 60.5 42 69.0
Gorai.002G265000 Gossypium raimondii HOM05D006682 ORTHO05D008627 1.1e-07 60.5 42 69.0
Ciclev10012386m.g Citrus clementina HOM05D006682 ORTHO05D008627 1.5e-07 60.1 56 55.4
Nitab4.5_0000492g0110 Nicotiana tabacum HOM05D006682 ORTHO05D008627 1.5e-07 60.1 62 48.4
Potri.003G205200 Populus trichocarpa HOM05D006682 ORTHO05D008627 1.9e-07 59.7 50 62.0
Cpa.g.sc12.111 Carica papaya HOM05D006682 ORTHO05D008627 2.5e-07 59.3 55 54.5
MELO3C015204.2 Cucumis melo HOM05D006682 ORTHO05D008627 2.5e-07 59.3 44 65.9
Cc00_g20370 Coffea canephora HOM05D006682 ORTHO05D008627 3.3e-07 58.9 56 53.6
Hma1.2p1_0401F.1_g144700 Hydrangea macrophylla HOM05D006682 ORTHO05D008627 3.3e-07 58.9 42 64.3
CiPaw.13G163300 Carya illinoinensis HOM05D006682 ORTHO05D008627 4.3e-07 58.5 47 63.8
Nitab4.5_0002026g0020 Nicotiana tabacum HOM05D006682 ORTHO05D008627 4.3e-07 58.5 62 46.8
CsaV3_1G042700 Cucumis sativus L. HOM05D006682 ORTHO05D008627 5.6e-07 58.2 44 65.9
Psat7g213040 Pisum sativum HOM05D006682 ORTHO05D008627 7.3e-07 57.8 55 54.5
Mapoly0003s0021 Marchantia polymorpha HOM05D006682 ORTHO05D008627 9.6e-07 57.4 48 54.2
Sed0028089 Sechium edule HOM05D006682 ORTHO05D008627 9.6e-07 57.4 44 65.9
Medtr4g065610 Medicago truncatula HOM05D006682 ORTHO05D008627 1.3e-06 57.0 55 60.0
Peaxi162Scf00029g00296 Petunia axillaris HOM05D006682 ORTHO05D008627 1.3e-06 57.0 62 50.0
SEGI_12993 Sequoiadendron giganteum HOM05D006682 ORTHO05D008627 1.3e-06 57.0 45 62.2
Manes.14G001136 Manihot esculenta HOM05D006682 ORTHO05D008627 1.6e-06 56.6 51 56.9
Actinidia16314 Actinidia chinensis HOM05D006682 ORTHO05D008627 2.1e-06 56.2 53 56.6
TWI38G0692 Tripterygium wilfordii HOM05D006682 ORTHO05D008627 2.1e-06 56.2 49 59.2
TPR.G35025 Trifolium pratense HOM05D006682 ORTHO05D008627 3.6e-06 55.5 49 65.3


User provided reference genes

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