Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 2.5e-101 372.1 184 100.0
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 1.8e-91 339.3 184 92.9
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 4.9e-65 251.5 185 68.6
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 1.1e-59 233.8 190 63.2
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 1.8e-59 233.0 192 65.1
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 3.1e-59 232.3 189 62.4
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 4.0e-59 231.9 188 62.8
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 4.0e-59 231.9 195 63.1
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 5.3e-59 231.5 196 63.3
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 5.3e-59 231.5 182 63.2
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 5.3e-59 231.5 184 64.1
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 4.4e-58 228.4 184 61.4
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 5.8e-58 228.0 194 62.4
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 7.6e-58 227.6 188 62.8
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 7.6e-58 227.6 184 63.6
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 9.9e-58 227.3 191 60.7
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 1.3e-57 226.9 143 73.4
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.3e-57 226.9 191 63.4
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 1.3e-57 226.9 184 60.9
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 1.7e-57 226.5 196 62.2
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 2.2e-57 226.1 186 61.8
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 2.9e-57 225.7 188 63.3
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 3.8e-57 225.3 184 61.4
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 3.8e-57 225.3 188 63.3
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 4.9e-57 224.9 185 64.9
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 4.9e-57 224.9 136 77.9
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 6.4e-57 224.6 140 73.6
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 1.1e-56 223.8 143 71.3
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 1.1e-56 223.8 186 60.8
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 1.1e-56 223.8 184 59.8
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 1.4e-56 223.4 187 62.6
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.4e-56 223.4 185 64.3
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 2.4e-56 222.6 184 59.8
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 3.2e-56 222.2 184 62.0
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 4.2e-56 221.9 190 60.5
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 4.2e-56 221.9 187 63.1
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 5.4e-56 221.5 180 60.6
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 5.4e-56 221.5 144 70.8
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 9.3e-56 220.7 164 64.6
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 9.3e-56 220.7 183 62.8
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 1.2e-55 220.3 184 58.7
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 1.6e-55 219.9 192 59.9
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 2.1e-55 219.5 185 59.5
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 2.1e-55 219.5 189 58.2
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 2.7e-55 219.2 140 72.1
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 3.5e-55 218.8 189 58.7
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 3.5e-55 218.8 189 58.2
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 3.5e-55 218.8 186 62.4
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 4.6e-55 218.4 184 60.9
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 6.0e-55 218.0 186 62.4
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 6.0e-55 218.0 143 69.9
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 6.0e-55 218.0 185 60.0
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 7.9e-55 217.6 189 57.7
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 7.9e-55 217.6 138 71.7
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 1.0e-54 217.2 184 62.5
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 1.0e-54 217.2 138 71.7
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.0e-54 217.2 186 63.4
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 1.7e-54 216.5 191 58.1
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 2.3e-54 216.1 186 58.6
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 2.3e-54 216.1 199 55.3
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 2.3e-54 216.1 187 61.5
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 5.1e-54 214.9 186 58.6
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 5.1e-54 214.9 186 62.4
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 6.6e-54 214.5 143 69.9
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 6.6e-54 214.5 186 61.3
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 8.7e-54 214.2 158 67.1
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 8.7e-54 214.2 186 59.1
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 1.1e-53 213.8 143 69.2
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 1.1e-53 213.8 177 57.6
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 1.5e-53 213.4 147 69.4
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 1.5e-53 213.4 139 69.8
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 1.9e-53 213.0 185 58.9
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 1.9e-53 213.0 198 56.6
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 2.5e-53 212.6 186 60.2
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 3.3e-53 212.2 197 59.9
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 3.3e-53 212.2 184 56.5
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 4.3e-53 211.8 222 52.7
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 4.3e-53 211.8 156 67.3
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 5.6e-53 211.5 186 57.0
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 5.6e-53 211.5 186 59.1
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 5.6e-53 211.5 186 57.0
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 7.3e-53 211.1 134 71.6
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 9.6e-53 210.7 189 58.7
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 9.6e-53 210.7 135 71.9
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 9.6e-53 210.7 170 61.2
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 1.3e-52 210.3 190 57.9
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 1.6e-52 209.9 195 56.4
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 2.1e-52 209.5 185 55.1
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 2.8e-52 209.1 186 58.1
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 2.8e-52 209.1 187 57.8
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 6.2e-52 208.0 184 57.6
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 6.2e-52 208.0 186 58.6
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 8.1e-52 207.6 198 56.1
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 8.1e-52 207.6 194 56.7
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 8.1e-52 207.6 189 54.5
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 1.1e-51 207.2 186 60.2
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 1.8e-51 206.5 185 56.8
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 2.4e-51 206.1 186 56.5
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 4.0e-51 205.3 147 66.7
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 5.3e-51 204.9 168 61.9
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 6.9e-51 204.5 148 66.2
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 9.0e-51 204.1 185 56.2
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 1.2e-50 203.8 186 59.7
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 2.6e-50 202.6 142 67.6
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 4.5e-50 201.8 189 56.6
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 4.5e-50 201.8 152 65.1
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 5.8e-50 201.4 143 65.7
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 9.9e-50 200.7 188 54.8
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 1.3e-49 200.3 182 54.4
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 1.7e-49 199.9 136 66.9
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 4.9e-49 198.4 247 45.7
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 8.4e-49 197.6 130 69.2
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 1.4e-48 196.8 134 67.2
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 2.4e-48 196.1 225 51.6
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 7.1e-48 194.5 129 69.0
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 1.0e-46 190.7 185 54.6
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 1.8e-46 189.9 114 72.8
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 1.8e-46 189.9 271 42.1
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 1.3e-44 183.7 139 65.5
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 1.6e-44 183.3 170 58.2
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 3.7e-44 182.2 127 68.5
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 3.1e-43 179.1 163 60.7
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 1.2e-42 177.2 164 56.1
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 1.3e-38 163.7 150 51.3
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 3.9e-38 162.2 124 61.3
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 6.7e-38 161.4 123 56.9
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 3.7e-36 155.6 87 80.5
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 1.8e-30 136.7 129 58.1
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 2.3e-30 136.3 90 71.1
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 1.5e-29 133.7 79 74.7
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 2.5e-29 132.9 143 53.1
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 7.4e-29 131.3 133 50.4
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 9.7e-29 131.0 86 68.6
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 6.9e-27 124.8 72 73.6
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 5.9e-26 121.7 72 72.2
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 2.5e-24 116.3 135 53.3
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 7.9e-23 111.3 65 70.8
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 6.7e-22 108.2 113 43.4
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 3.7e-20 102.4 105 42.9
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 3.8e-17 92.4 59 69.5
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 9.4e-16 87.8 63 65.1
Gorai.007G045300 Gossypium raimondii HOM05D005248 ORTHO05D006409 1.9e-08 63.5 89 46.1
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 3.2e-08 62.8 35 74.3
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 1.8e-06 57.0 85 37.6


User provided reference genes

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