Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.1e-262 909.4 463 100.0
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 6.7e-196 687.6 463 74.5
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 3.3e-195 685.3 462 73.8
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 3.7e-194 681.8 464 74.1
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 1.1e-193 680.2 464 73.1
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.4e-193 679.9 463 74.1
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.6e-192 676.4 462 73.8
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.6e-192 676.4 462 73.8
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.6e-192 675.6 462 73.2
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 3.5e-192 675.2 466 71.2
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 1.0e-191 673.7 462 71.6
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.0e-191 673.7 462 73.2
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 3.8e-191 671.8 463 71.9
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 5.0e-191 671.4 459 72.3
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 6.5e-191 671.0 463 71.7
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 6.5e-191 671.0 456 73.2
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 6.5e-191 671.0 464 73.1
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 2.5e-190 669.1 439 74.3
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 2.5e-190 669.1 464 72.4
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 2.7e-189 665.6 463 71.3
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 8.0e-189 664.1 456 72.4
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 1.5e-187 659.8 443 74.5
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 2.6e-187 659.1 465 72.9
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 3.4e-187 658.7 438 73.1
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 3.4e-187 658.7 461 70.9
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 1.3e-186 656.8 448 71.4
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 1.7e-186 656.4 461 71.1
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 1.7e-186 656.4 452 73.2
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 8.3e-186 654.1 441 73.0
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 1.8e-185 652.9 442 73.1
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 2.4e-185 652.5 440 72.3
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 3.1e-185 652.1 468 69.7
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 3.1e-185 652.1 455 71.2
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 5.4e-185 651.4 464 69.8
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 7.0e-185 651.0 438 72.6
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 7.0e-185 651.0 468 70.5
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 2.7e-184 649.0 470 70.4
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 2.7e-184 649.0 469 69.9
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 5.9e-184 647.9 447 71.1
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 7.7e-184 647.5 444 71.6
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 1.0e-183 647.1 469 69.9
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 5.5e-182 641.3 458 70.3
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 7.2e-182 641.0 447 70.2
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 9.4e-182 640.6 447 70.9
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 1.2e-181 640.2 462 68.8
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 1.6e-181 639.8 462 69.9
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 2.1e-181 639.4 466 69.3
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 4.7e-181 638.3 465 69.2
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 1.4e-180 636.7 442 70.8
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 1.4e-180 636.7 462 68.2
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 2.3e-180 636.0 448 70.1
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 4.0e-180 635.2 456 69.7
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 5.2e-180 634.8 474 67.5
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 2.0e-179 632.9 447 70.7
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 2.0e-179 632.9 462 68.8
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 4.9e-178 628.2 472 67.8
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 1.1e-177 627.1 445 69.9
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 3.1e-177 625.5 470 67.2
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 5.4e-177 624.8 463 67.8
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 2.0e-176 622.9 445 69.9
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 1.3e-175 620.2 463 68.3
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.3e-175 620.2 394 75.4
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 2.5e-174 615.9 440 69.3
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 9.5e-174 614.0 444 67.8
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 1.2e-173 613.6 445 69.0
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 3.6e-173 612.1 463 66.1
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 6.1e-173 611.3 445 68.5
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 6.1e-173 611.3 445 68.5
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 6.1e-173 611.3 445 68.5
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 1.4e-172 610.1 444 67.8
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 1.8e-172 609.8 445 68.5
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 1.8e-172 609.8 444 68.7
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 2.3e-172 609.4 465 66.7
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 4.0e-172 608.6 429 71.8
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 6.8e-172 607.8 445 68.3
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 6.8e-172 607.8 440 69.1
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 1.5e-171 606.7 452 65.9
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 1.5e-171 606.7 431 68.9
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 1.5e-171 606.7 463 66.1
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 1.5e-171 606.7 463 65.7
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 2.0e-171 606.3 461 67.0
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 2.6e-171 605.9 445 67.6
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 3.4e-171 605.5 431 69.1
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 5.7e-171 604.7 445 68.3
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 9.8e-171 604.0 431 68.0
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 9.8e-171 604.0 431 68.0
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 9.8e-171 604.0 467 66.6
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 1.7e-170 603.2 466 68.2
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 3.7e-170 602.1 464 66.4
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 4.9e-170 601.7 431 68.7
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 6.4e-170 601.3 463 66.1
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 6.4e-170 601.3 448 67.0
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 1.1e-169 600.5 432 67.6
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 2.4e-169 599.4 456 65.8
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 2.4e-169 599.4 463 66.3
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 5.4e-169 598.2 449 65.9
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 1.3e-167 593.6 462 63.9
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 4.7e-165 585.1 442 66.1
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 5.2e-164 581.6 457 63.9
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 2.0e-163 579.7 445 64.7
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 2.9e-162 575.9 470 63.0
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 9.2e-161 570.9 445 65.2
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 1.2e-157 560.5 445 63.8
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 2.1e-157 559.7 458 63.3
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 6.2e-157 558.1 354 74.9
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 2.9e-154 549.3 456 59.9
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 1.4e-153 547.0 384 69.0
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 2.1e-152 543.1 401 66.1
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.0e-151 540.8 462 62.1
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 5.1e-151 538.5 466 62.2
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 1.2e-149 533.9 475 61.3
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 1.2e-149 533.9 464 61.2
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 1.6e-149 533.5 411 65.5
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 3.6e-149 532.3 337 75.7
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 1.4e-148 530.4 470 60.9
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 6.8e-148 528.1 435 63.0
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 1.2e-147 527.3 470 60.4
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 4.1e-145 518.8 438 59.8
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 4.6e-144 515.4 359 70.5
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 2.3e-135 486.5 371 63.6
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.1e-134 484.2 440 58.2
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 5.6e-134 481.9 301 77.7
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 5.6e-126 455.3 474 55.3
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 5.5e-121 438.7 463 54.4
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 2.1e-112 410.2 455 43.7
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 5.0e-106 389.0 347 59.1
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 3.1e-92 343.2 461 46.9
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 2.9e-90 336.7 197 78.7
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 5.5e-89 332.4 291 59.8
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 1.2e-88 331.3 390 41.5
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 4.5e-83 312.8 369 47.4
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.7e-82 310.8 209 67.9
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 7.2e-81 305.4 358 48.3
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 3.4e-70 270.0 225 63.6
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 9.8e-70 268.5 155 78.1
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 1.3e-69 268.1 225 65.3
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 8.9e-55 218.8 191 57.6
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 4.6e-35 153.3 152 55.3
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 6.0e-35 152.9 201 46.3
SMO351G0588 Selaginella moellendorffii HOM05D020388 ORTHO05D005384 1.3e-34 151.8 435 28.5
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 3.9e-34 150.2 152 57.2
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 3.3e-33 147.1 96 70.8
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 3.1e-31 140.6 91 71.4
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 1.6e-27 128.3 145 55.2
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 1.8e-23 114.8 79 69.6
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 2.0e-22 111.3 115 50.4
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 1.3e-21 108.6 74 67.6
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 2.4e-20 104.4 69 69.6
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 4.2e-20 103.6 69 68.1
Cfa023998 Carpinus fangiana HOM05D004704 ORTHO05D005384 2.3e-18 97.8 180 30.6
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 2.8e-16 90.9 150 40.7
Rhsim06G0194700 Rhododendron simsii HOM05D000067 ORTHO05D000097 4.8e-16 90.1 73 61.6
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 1.3e-13 82.0 51 76.5
Nitab4.5_0008860g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 4.6e-11 73.6 77 54.5
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 1.6e-08 65.1 60 60.0
SEGI_17553 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 1.5e-06 58.5 54 55.6


User provided reference genes

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