Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G00443 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 7.8e-245 850.1 458 100.0
PSO063G4235 Papaver somniferum HOM05D005057 ORTHO05D006570 1.9e-203 712.6 455 79.8
GSVIVG01021196001 Vitis vinifera HOM05D005057 ORTHO05D006570 8.1e-194 680.6 394 85.8
Actinidia16804 Actinidia chinensis HOM05D005057 ORTHO05D006570 3.1e-193 678.7 448 78.6
Thecc.06G172400 Theobroma cacao HOM05D005057 ORTHO05D006570 6.9e-193 677.6 397 82.9
Hma1.2p1_0155F.1_g068170 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 2.0e-192 676.0 392 84.2
Prupe.4G059900 Prunus persica HOM05D005057 ORTHO05D006570 1.7e-191 672.9 396 82.6
Rhsim13G0191300 Rhododendron simsii HOM05D005057 ORTHO05D006570 2.9e-191 672.2 387 84.2
Manes.16G037800 Manihot esculenta HOM05D005057 ORTHO05D006570 1.4e-190 669.8 458 76.6
CiPaw.09G069000 Carya illinoinensis HOM05D005057 ORTHO05D006570 2.5e-190 669.1 395 83.3
Ciclev10014965m.g Citrus clementina HOM05D005057 ORTHO05D006570 5.5e-190 667.9 394 82.7
Potri.011G065000 Populus trichocarpa HOM05D005057 ORTHO05D006570 7.1e-190 667.5 461 74.0
ClCG03G007800 Citrullus lanatus HOM05D005057 ORTHO05D006570 2.7e-189 665.6 455 75.2
Migut.H01447 Erythranthe guttata HOM05D005057 ORTHO05D006570 2.7e-189 665.6 394 81.7
Gorai.010G158900 Gossypium raimondii HOM05D005057 ORTHO05D006570 3.5e-189 665.2 397 82.1
RcHm_v2.0_Chr5g0010551 Rosa chinensis HOM05D005057 ORTHO05D006570 6.0e-189 664.5 394 82.5
MD10G1281300 Malus domestica HOM05D005057 ORTHO05D006570 1.0e-188 663.7 396 81.8
Sopen02g021880 Solanum pennellii HOM05D005057 ORTHO05D006570 1.0e-188 663.7 458 74.5
FvH4_3g07940 Fragaria vesca HOM05D005057 ORTHO05D006570 1.8e-188 662.9 394 82.5
MELO3C002642.2 Cucumis melo HOM05D005057 ORTHO05D006570 3.0e-188 662.1 461 74.2
FAN07G2484 Fragaria x ananassa HOM05D005057 ORTHO05D006570 3.0e-188 662.1 392 82.7
Sabra11G0046800 Salix brachista HOM05D005057 ORTHO05D006570 3.9e-188 661.8 397 82.1
Eucgr.D00512 Eucalyptus grandis HOM05D005057 ORTHO05D006570 1.5e-187 659.8 394 82.2
CAN.G370.63 Capsicum annuum HOM05D005057 ORTHO05D006570 3.3e-187 658.7 388 83.0
Gohir.A06G130800 Gossypium hirsutum HOM05D005057 ORTHO05D006570 5.7e-187 657.9 397 81.6
Atru.chr10.1683 Acer truncatum HOM05D005057 ORTHO05D006570 2.1e-186 656.0 438 75.3
CsaV3_1G033430 Cucumis sativus L. HOM05D005057 ORTHO05D006570 2.8e-186 655.6 461 73.1
PGR004G2757 Punica granatum HOM05D005057 ORTHO05D006570 2.8e-186 655.6 397 82.1
CANSAT35G0522 Cannabis sativa HOM05D005057 ORTHO05D006570 8.2e-186 654.1 400 80.5
Medtr2g015860 Medicago truncatula HOM05D005057 ORTHO05D006570 1.0e-183 647.1 394 81.0
Lalb_Chr15g0089481 Lupinus albus HOM05D005057 ORTHO05D006570 3.8e-183 645.2 393 80.9
ECA236G3111 Erigeron canadensis HOM05D005057 ORTHO05D006570 2.5e-182 642.5 394 82.2
HanXRQChr13g0397391 Helianthus annuus HOM05D005057 ORTHO05D006570 4.2e-182 641.7 394 81.5
Cc02_g14710 Coffea canephora HOM05D005057 ORTHO05D006570 2.7e-181 639.0 394 79.9
Aqoxy12s001 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 4.6e-181 638.3 349 93.7
Glyma.13G230500 Glycine max HOM05D005057 ORTHO05D006570 1.0e-180 637.1 392 79.8
Sc12g0008060 Simmondsia chinensis HOM05D005057 ORTHO05D006570 1.0e-180 637.1 394 80.5
ATR0602G189 Amborella trichopoda HOM05D005057 ORTHO05D006570 2.3e-180 636.0 395 80.0
TWI38G0714 Tripterygium wilfordii HOM05D005057 ORTHO05D006570 3.9e-180 635.2 405 79.8
arahy.Tifrunner.gnm1.ann1.9TM733 Arachis hypogaea HOM05D005057 ORTHO05D006570 5.7e-179 631.3 392 79.8
arahy.Tifrunner.gnm1.ann1.E17GNY Arachis hypogaea HOM05D005057 ORTHO05D006570 7.4e-179 630.9 392 79.8
Lj6g0017686 Lotus japonicus HOM05D005057 ORTHO05D006570 2.4e-177 625.9 423 75.7
MBI06_g25988_MAGBIO Magnolia biondii HOM05D005057 ORTHO05D006570 6.9e-177 624.4 399 78.7
Oeu041787.3 Olea europaea HOM05D005057 ORTHO05D006570 1.5e-176 623.2 374 81.3
FvH4_4g20380 Fragaria vesca HOM05D005057 ORTHO05D006570 2.6e-176 622.5 372 82.0
A05p11560 Brassica napus HOM05D005057 ORTHO05D006570 1.0e-175 620.5 396 78.3
BcaB02g10615 Brassica carinata HOM05D005057 ORTHO05D006570 1.3e-175 620.2 396 77.8
vmacro03932 Vaccinium macrocarpon HOM05D005057 ORTHO05D006570 1.3e-175 620.2 592 61.0
AL4G30000 Arabidopsis lyrata HOM05D005057 ORTHO05D006570 1.7e-175 619.8 396 78.8
Sp4g16440 Schrenkiella parvula HOM05D005057 ORTHO05D006570 2.2e-175 619.4 396 78.3
AT2G34090 Arabidopsis thaliana HOM05D005057 ORTHO05D006570 5.0e-175 618.2 396 78.3
DCAR_004016 Daucus carota HOM05D005057 ORTHO05D006570 1.1e-174 617.1 394 78.7
Aa31LG9G13900 Aethionema arabicum HOM05D005057 ORTHO05D006570 2.5e-174 615.9 395 77.5
Carub.0004s1572 Capsella rubella HOM05D005057 ORTHO05D006570 7.2e-174 614.4 396 77.8
Thhalv10016658m.g Eutrema salsugineum HOM05D005057 ORTHO05D006570 1.6e-173 613.2 396 77.8
SGA_v2.0_scaffold307G48045 Striga asiatica HOM05D005057 ORTHO05D006570 2.1e-173 612.8 452 69.7
THA.LOC104814250 Tarenaya hassleriana HOM05D005057 ORTHO05D006570 2.1e-173 612.8 422 73.7
C04p15030 Brassica napus HOM05D005057 ORTHO05D006570 2.3e-172 609.4 419 74.5
BraA05t20104Z Brassica rapa HOM05D005057 ORTHO05D006570 3.0e-172 609.0 424 73.6
Ca_00428_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 1.3e-170 603.6 365 81.4
CDE10G0488 Ceratophyllum demersum HOM05D005057 ORTHO05D006570 2.8e-170 602.4 360 83.9
SalBow7G0088 Salvia bowleyana HOM05D005057 ORTHO05D006570 4.8e-170 601.7 363 81.8
BolC4t23078H Brassica oleracea HOM05D005057 ORTHO05D006570 2.4e-169 599.4 424 73.6
CARHR128190 Cardamine hirsuta HOM05D005057 ORTHO05D006570 5.3e-169 598.2 386 77.2
EL10Ac8g20510 Beta vulgaris HOM05D005057 ORTHO05D006570 6.9e-169 597.8 430 70.9
Lj2A297G103 Lonicera japonica HOM05D005057 ORTHO05D006570 1.2e-168 597.0 381 78.7
VMungo0540G0206 Vigna mungo HOM05D005057 ORTHO05D006570 1.5e-168 596.7 393 75.8
Haze_06250 Corylus avellana HOM05D005057 ORTHO05D006570 5.5e-166 588.2 394 76.6
Ah.09g233650 Amaranthus hybridus HOM05D005057 ORTHO05D006570 1.8e-164 583.2 393 75.1
MSTRG.13217 Avicennia marina HOM05D005057 ORTHO05D006570 1.5e-163 580.1 396 73.7
AUR62031175 Chenopodium quinoa HOM05D005057 ORTHO05D006570 1.1e-161 573.9 361 78.4
Gohir.D06G136700 Gossypium hirsutum HOM05D005057 ORTHO05D006570 5.3e-161 571.6 397 73.0
Phvul.006G176700 Phaseolus vulgaris HOM05D005057 ORTHO05D006570 9.4e-158 560.8 393 73.3
AagrBONN_evm.TU.Sc2ySwM_344.2851 Anthoceros agrestis HOM05D005057 ORTHO05D006570 1.8e-156 556.6 401 69.3
FAN11G1223 Fragaria x ananassa HOM05D005057 ORTHO05D006570 3.0e-156 555.8 436 67.2
COL.COLO4_31315 Corchorus olitorius HOM05D005057 ORTHO05D006570 2.6e-155 552.7 388 72.2
Dinv04618 Davidia involucrata HOM05D005057 ORTHO05D006570 1.3e-154 550.4 426 67.6
Sed0014368 Sechium edule HOM05D005057 ORTHO05D006570 7.2e-150 534.6 455 64.2
Pp3c16_13000 Physcomitrium patens HOM05D005057 ORTHO05D006570 7.5e-147 524.6 406 67.2
Mapoly0152s0011 Marchantia polymorpha HOM05D005057 ORTHO05D006570 1.7e-146 523.5 402 66.7
SMO142G0032 Selaginella moellendorffii HOM05D005057 ORTHO05D006570 9.1e-145 517.7 382 67.8
Lsat_1_v5_gn_7_23040 Lactuca sativa HOM05D005057 ORTHO05D006570 3.5e-144 515.8 378 72.2
Hund21184 Selenicereus undatus HOM05D005057 ORTHO05D006570 1.0e-143 514.2 393 69.2
Duzib160G0357 Durio zibethinus HOM05D005057 ORTHO05D006570 2.3e-143 513.1 397 65.5
Hma1.2p1_0155F.1_g068180 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 4.2e-142 508.8 358 72.6
AUR62036592 Chenopodium quinoa HOM05D005057 ORTHO05D006570 2.1e-141 506.5 391 67.0
FAN25G1331 Fragaria x ananassa HOM05D005057 ORTHO05D006570 1.2e-139 500.7 400 67.0
FAN16G2413 Fragaria x ananassa HOM05D005057 ORTHO05D006570 2.6e-139 499.6 394 67.0
Zm00001eb162010 Zea mays HOM05D005057 ORTHO05D006570 4.9e-138 495.4 292 84.2
PSO782G3653 Papaver somniferum HOM05D005057 ORTHO05D006570 3.0e-132 476.1 369 70.2
Cpa.g.sc7.56 Carica papaya HOM05D005057 ORTHO05D006570 3.9e-127 459.1 333 72.4
Nn1g09052 Nelumbo nucifera HOM05D005057 ORTHO05D006570 2.7e-120 436.4 260 83.5
PRCOL_00006187 Prasinoderma coloniale HOM05D005057 ORTHO05D006570 7.3e-118 428.3 403 54.3
Psat1g199000 Pisum sativum HOM05D005057 ORTHO05D006570 1.5e-115 420.6 244 85.2
MCO11G641 Micromonas commoda HOM05D005057 ORTHO05D006570 7.3e-110 401.7 399 53.4
Cre01.g033700 Chlamydomonas reinhardtii HOM05D005057 ORTHO05D006570 4.0e-108 396.0 461 48.8
TPR.G11697 Trifolium pratense HOM05D005057 ORTHO05D006570 2.9e-106 389.8 256 76.2
Solyc02g076950.2 Solanum lycopersicum HOM05D005057 ORTHO05D006570 3.8e-90 336.3 252 72.6
Peaxi162Scf00261g01011 Petunia axillaris HOM05D005057 ORTHO05D006570 2.7e-88 330.1 205 76.6
QL05p046449 Quercus lobata HOM05D005057 ORTHO05D006570 2.5e-86 323.6 531 39.9
Nitab4.5_0000681g0230 Nicotiana tabacum HOM05D005057 ORTHO05D006570 9.9e-83 311.6 252 69.8
Nitab4.5_0003322g0070 Nicotiana tabacum HOM05D005057 ORTHO05D006570 1.3e-82 311.2 246 69.1
Nitab4.5_0000681g0220 Nicotiana tabacum HOM05D005057 ORTHO05D006570 1.3e-77 294.7 187 74.3
TAR626G1061 Trochodendron aralioides HOM05D005057 ORTHO05D006570 1.3e-77 294.7 173 82.7
Lalb_Chr18g0059151 Lupinus albus HOM05D005057 ORTHO05D006570 2.1e-77 293.9 193 79.8
Nitab4.5_0003322g0060 Nicotiana tabacum HOM05D005057 ORTHO05D006570 2.8e-77 293.5 187 74.9
Nn1g09100 Nelumbo nucifera HOM05D005057 ORTHO05D006570 1.8e-68 264.2 140 93.6
unitig_22.g6755 Utricularia gibba HOM05D005057 ORTHO05D006570 2.0e-67 260.8 155 81.9
Lalb_Chr18g0059161 Lupinus albus HOM05D005057 ORTHO05D006570 3.4e-67 260.0 185 69.7
QL05p046461 Quercus lobata HOM05D005057 ORTHO05D006570 1.6e-64 251.1 145 86.2
Os01g0613900 Oryza sativa ssp. japonica HOM05D005057 ORTHO05D006570 1.4e-63 248.1 140 86.4
MD05G1302500 Malus domestica HOM05D005057 ORTHO05D006570 1.1e-62 245.0 319 48.3
TPR.G30010 Trifolium pratense HOM05D005057 ORTHO05D006570 9.7e-62 241.9 175 70.3
BcaC04g22954 Brassica carinata HOM05D005057 ORTHO05D006570 2.8e-61 240.4 211 64.5
C09p55570 Brassica napus HOM05D005057 ORTHO05D006570 2.8e-61 240.4 211 64.5
BolC9t54241H Brassica oleracea HOM05D005057 ORTHO05D006570 2.8e-61 240.4 211 64.5
BcaC01g06160 Brassica carinata HOM05D005057 ORTHO05D006570 3.8e-58 229.9 213 64.3
HPP92_020184 Vanilla planifolia HOM05D005057 ORTHO05D006570 5.0e-58 229.6 165 67.9
Ca_30957_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 2.7e-56 223.8 124 85.5
Psat1g199040 Pisum sativum HOM05D005057 ORTHO05D006570 1.8e-47 194.5 129 73.6
CSS0031450 Camellia sinensis var. sinensis HOM05D005057 ORTHO05D006570 1.4e-44 184.9 122 70.5
HPP92_020166 Vanilla planifolia HOM05D005057 ORTHO05D006570 2.4e-44 184.1 180 57.8
TAR626G0988 Trochodendron aralioides HOM05D005057 ORTHO05D006570 4.5e-43 179.9 95 93.7
SEGI_02925 Sequoiadendron giganteum HOM05D005057 ORTHO05D006570 5.7e-38 162.9 92 83.7
unitig_22.g6756 Utricularia gibba HOM05D005057 ORTHO05D006570 2.0e-35 154.5 84 89.3
unitig_22.g6754 Utricularia gibba HOM05D005057 ORTHO05D006570 1.2e-32 145.2 150 51.3
BolC4t26729H Brassica oleracea HOM05D005057 ORTHO05D006570 4.4e-30 136.7 94 75.5
BolC7t41970H Brassica oleracea HOM05D005057 ORTHO05D006570 1.7e-29 134.8 94 74.5
COL.COLO4_25087 Corchorus olitorius HOM05D005057 ORTHO05D006570 1.8e-28 131.3 74 81.1
Glyma.14G170500 Glycine max HOM05D005057 ORTHO05D006570 5.9e-27 126.3 124 56.5
RcHm_v2.0_Chr5g0010591 Rosa chinensis HOM05D005057 ORTHO05D006570 2.1e-24 117.9 74 77.0
HPP92_020183 Vanilla planifolia HOM05D005057 ORTHO05D006570 1.8e-23 114.8 86 66.3
PSO063G0949 Papaver somniferum HOM05D005057 ORTHO05D006570 1.2e-22 112.1 179 41.3
MD16G1033100 Malus domestica HOM05D005057 ORTHO05D006570 1.8e-20 104.8 62 79.0
arahy.Tifrunner.gnm1.ann1.XF9LE9 Arachis hypogaea HOM05D005057 ORTHO05D011377 9.2e-20 102.4 160 42.5
BcaC01g03610 Brassica carinata HOM05D005057 ORTHO05D019871 1.4e-12 78.6 73 57.5
Medtr2g015780 Medicago truncatula HOM05D005057 ORTHO05D006570 4.1e-12 77.0 58 67.2
BolC8t49834H Brassica oleracea HOM05D005057 ORTHO05D019871 1.6e-08 65.1 132 36.4
RcHm_v2.0_Chr5g0010491 Rosa chinensis HOM05D005057 ORTHO05D006570 4.0e-07 60.5 143 33.6
CDE04G0254 Ceratophyllum demersum HOM05D001182 ORTHO05D008051 3.4e-06 57.4 44 61.4


User provided reference genes

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