Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G00427 Aquilegia oxysepala HOM05D004563 ORTHO05D002944 2.4e-248 861.7 434 100.0
TAR624G1329 Trochodendron aralioides HOM05D004563 ORTHO05D002944 8.6e-36 155.6 474 31.2
Aqoxy1G03185 Aquilegia oxysepala HOM05D004563 ORTHO05D002944 1.3e-26 125.2 500 29.4
CSS0006802 Camellia sinensis var. sinensis HOM05D004563 ORTHO05D002944 9.9e-24 115.5 451 28.6
Prupe.3G122900 Prunus persica HOM05D004563 ORTHO05D002944 7.1e-22 109.4 457 28.9
Atru.chr2.2242 Acer truncatum HOM05D008023 ORTHO05D002944 3.0e-20 104.0 500 27.8
Actinidia10974 Actinidia chinensis HOM05D004563 ORTHO05D002944 3.0e-20 104.0 471 26.5
Actinidia18792 Actinidia chinensis HOM05D008023 ORTHO05D002944 1.1e-19 102.1 528 28.6
Atru.chr6.2814 Acer truncatum HOM05D004563 ORTHO05D002944 1.9e-19 101.3 447 26.8
Actinidia11133 Actinidia chinensis HOM05D004563 ORTHO05D002944 4.3e-19 100.1 468 27.6
TAR629G2655 Trochodendron aralioides HOM05D004563 ORTHO05D002944 7.3e-19 99.4 443 28.9
Actinidia35220 Actinidia chinensis HOM05D008023 ORTHO05D002944 9.6e-19 99.0 527 26.9
Lj3g0002978 Lotus japonicus HOM05D008023 ORTHO05D002944 1.3e-18 98.6 484 24.2
Potri.001G376800 Populus trichocarpa HOM05D008023 ORTHO05D002944 3.6e-18 97.1 495 26.3
Dinv14970 Davidia involucrata HOM05D008023 ORTHO05D002944 4.8e-18 96.7 503 26.4
vmacro09501 Vaccinium macrocarpon HOM05D008023 ORTHO05D002944 8.1e-18 95.9 528 26.1
Ciclev10015391m.g Citrus clementina HOM05D004563 ORTHO05D002944 1.4e-17 95.1 456 26.8
Eucgr.A01904 Eucalyptus grandis HOM05D004563 ORTHO05D002944 1.8e-17 94.7 452 25.4
CANSAT64G2099 Cannabis sativa HOM05D004563 ORTHO05D002944 9.0e-17 92.4 452 25.9
Cfa019590 Carpinus fangiana HOM05D008023 ORTHO05D002944 1.2e-16 92.0 515 26.2
Rhsim04G0024700 Rhododendron simsii HOM05D008023 ORTHO05D002944 1.5e-16 91.7 532 26.7
Thecc.01G148500 Theobroma cacao HOM05D004563 ORTHO05D002944 2.6e-16 90.9 457 25.4
CiPaw.04G131700 Carya illinoinensis HOM05D004563 ORTHO05D002944 5.8e-16 89.7 472 26.1
Glyma.06G231200 Glycine max HOM05D008023 ORTHO05D002944 1.3e-15 88.6 496 26.6
Haze_13348 Corylus avellana HOM05D004563 ORTHO05D002944 1.7e-15 88.2 446 27.1
CSS0011468 Camellia sinensis var. sinensis HOM05D004563 ORTHO05D002944 3.8e-15 87.0 456 27.4
Lj1A833T49 Lonicera japonica HOM05D008023 ORTHO05D002944 3.8e-15 87.0 478 26.4
MD17G1232800 Malus domestica HOM05D004563 ORTHO05D002944 4.9e-15 86.7 452 25.2
MD09G1239700 Malus domestica HOM05D004563 ORTHO05D002944 8.4e-15 85.9 459 26.4
Psat4g175400 Pisum sativum HOM05D008023 ORTHO05D002944 1.1e-14 85.5 496 27.4
CANSAT35G0556 Cannabis sativa HOM05D008023 ORTHO05D010897 1.4e-14 85.1 512 27.9
TWI59G1400 Tripterygium wilfordii HOM05D004563 ORTHO05D002944 1.9e-14 84.7 471 26.3
vmacro12368 Vaccinium macrocarpon HOM05D004563 ORTHO05D002944 1.9e-14 84.7 474 25.3
TAR626G0818 Trochodendron aralioides HOM05D008023 ORTHO05D002944 3.2e-14 84.0 171 34.5
Nitab4.5_0003827g0050 Nicotiana tabacum HOM05D004563 ORTHO05D002944 4.2e-14 83.6 439 24.8
PSO675G1487 Papaver somniferum HOM05D004563 ORTHO05D002944 1.6e-13 81.6 541 23.8
Medtr4g079720 Medicago truncatula HOM05D004563 ORTHO05D002944 6.0e-13 79.7 446 25.6
Duzib147G1211 Durio zibethinus HOM05D004563 ORTHO05D002944 7.9e-13 79.3 457 23.2
QL08p041398 Quercus lobata HOM05D004563 ORTHO05D002944 7.9e-13 79.3 467 24.4
PGSC0003DMG400020429 Solanum tuberosum HOM05D004563 ORTHO05D002944 7.9e-13 79.3 433 24.0
PGR042G0272 Punica granatum HOM05D004563 ORTHO05D002944 1.8e-12 78.2 452 26.5
Sopen12g006190 Solanum pennellii HOM05D004563 ORTHO05D002944 1.8e-12 78.2 469 23.9
CSS0035750 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 2.3e-12 77.8 177 37.9
vmacro09223 Vaccinium macrocarpon HOM05D004563 ORTHO05D002944 3.0e-12 77.4 436 24.3
Ciclev10008068m.g Citrus clementina HOM05D008023 ORTHO05D002944 3.9e-12 77.0 510 24.5
Hma1.2p1_0178F.1_g078980 Hydrangea macrophylla HOM05D004563 ORTHO05D002944 5.1e-12 76.6 123 43.1
QL08p026875 Quercus lobata HOM05D008023 ORTHO05D002944 5.1e-12 76.6 541 24.6
Sabra13G0099900 Salix brachista HOM05D004563 ORTHO05D002944 5.1e-12 76.6 452 24.3
Solyc12g010830.2 Solanum lycopersicum HOM05D004563 ORTHO05D002944 5.1e-12 76.6 462 24.7
TPR.G12029 Trifolium pratense HOM05D008023 ORTHO05D002944 5.1e-12 76.6 474 25.5
Gorai.011G124100 Gossypium raimondii HOM05D004563 ORTHO05D002944 6.7e-12 76.3 453 22.7
CiPaw.12G114700 Carya illinoinensis HOM05D008023 ORTHO05D002944 8.7e-12 75.9 493 26.0
Potri.013G118000 Populus trichocarpa HOM05D004563 ORTHO05D002944 8.7e-12 75.9 443 23.7
Gohir.D10G112200 Gossypium hirsutum HOM05D004563 ORTHO05D002944 1.5e-11 75.1 456 23.7
Sabra16G0248200 Salix brachista HOM05D008023 ORTHO05D002944 1.5e-11 75.1 515 25.0
CAN.G318.9 Capsicum annuum HOM05D004563 ORTHO05D002944 1.9e-11 74.7 447 24.6
Lalb_Chr19g0133891 Lupinus albus HOM05D008023 ORTHO05D002944 2.5e-11 74.3 520 24.0
CSS0011548 Camellia sinensis var. sinensis HOM05D014353 ORTHO05D002944 3.3e-11 73.9 454 26.4
Manes.15G092100 Manihot esculenta HOM05D008023 ORTHO05D002944 3.3e-11 73.9 264 29.5
Cc01_g02410 Coffea canephora HOM05D008023 ORTHO05D002944 4.3e-11 73.6 306 29.7
PSO541G0319 Papaver somniferum HOM05D004563 ORTHO05D002944 4.3e-11 73.6 544 23.5
Solyc07g053320.4 Solanum lycopersicum HOM05D004563 ORTHO05D002944 4.3e-11 73.6 433 22.2
Lj3g0023253 Lotus japonicus HOM05D004563 ORTHO05D002944 7.4e-11 72.8 442 23.1
Nitab4.5_0000537g0100 Nicotiana tabacum HOM05D004563 ORTHO05D002944 7.4e-11 72.8 462 22.9
Rhsim06G0133100 Rhododendron simsii HOM05D004563 ORTHO05D002944 9.6e-11 72.4 466 25.5
Duzib213G0674 Durio zibethinus HOM05D008023 ORTHO05D002944 1.3e-10 72.0 426 24.9
Nitab4.5_0010797g0050 Nicotiana tabacum HOM05D004563 ORTHO05D002944 1.3e-10 72.0 445 24.3
Sopen07g027280 Solanum pennellii HOM05D004563 ORTHO05D002944 1.3e-10 72.0 434 23.3
Dinv03911 Davidia involucrata HOM05D004563 ORTHO05D002944 1.6e-10 71.6 140 40.0
Manes.03G103000 Manihot esculenta HOM05D008023 ORTHO05D002944 2.1e-10 71.2 250 29.2
GSVIVG01020684001 Vitis vinifera HOM05D004563 ORTHO05D002944 3.7e-10 70.5 506 24.1
GSVIVG01014227001 Vitis vinifera HOM05D008023 ORTHO05D002944 4.8e-10 70.1 389 26.5
CAN.G456.28 Capsicum annuum HOM05D004563 ORTHO05D002944 8.1e-10 69.3 145 32.4
MBI07_g21399_MAGBIO Magnolia biondii HOM05D004563 ORTHO05D002944 8.1e-10 69.3 471 24.0
Oeu032703.1 Olea europaea HOM05D004563 ORTHO05D002944 8.1e-10 69.3 461 24.1
Cc05_g11360 Coffea canephora HOM05D008023 ORTHO05D002944 1.1e-09 68.9 234 34.6
Nitab4.5_0006772g0010 Nicotiana tabacum HOM05D004563 ORTHO05D002944 1.4e-09 68.6 179 30.2
Gohir.A10G153900 Gossypium hirsutum HOM05D004563 ORTHO05D002944 1.8e-09 68.2 450 22.7
Prupe.4G170200 Prunus persica HOM05D008023 ORTHO05D002944 1.8e-09 68.2 357 24.6
Thecc.07G105200 Theobroma cacao HOM05D008023 ORTHO05D002944 1.8e-09 68.2 114 41.2
TAR626G0367 Trochodendron aralioides HOM05D004563 ORTHO05D002944 1.8e-09 68.2 140 35.0
MSTRG.14316 Avicennia marina HOM05D004563 ORTHO05D002944 5.3e-09 66.6 472 25.8
Peaxi162Scf00069g02022 Petunia axillaris HOM05D018586 ORTHO05D002944 5.3e-09 66.6 113 39.8
Hund07832 Selenicereus undatus HOM05D004563 ORTHO05D002944 5.3e-09 66.6 442 22.6
CiPaw.11G162800 Carya illinoinensis HOM05D008023 ORTHO05D002944 1.2e-08 65.5 450 26.4
Peaxi162Scf00469g00139 Petunia axillaris HOM05D004563 ORTHO05D002944 1.5e-08 65.1 138 34.1
CAN.G162.20 Capsicum annuum HOM05D018586 ORTHO05D002944 2.0e-08 64.7 338 28.1
Ca_23071_v3 Cicer arietinum L. HOM05D008023 ORTHO05D002944 2.0e-08 64.7 492 25.0
ClCG02G017950 Citrullus lanatus HOM05D004563 ORTHO05D002944 2.6e-08 64.3 454 25.6
HanXRQChr17g0557991 Helianthus annuus HOM05D004563 ORTHO05D002944 2.6e-08 64.3 461 23.4
Cc05_g08130 Coffea canephora HOM05D004563 ORTHO05D002944 3.4e-08 63.9 457 24.9
CSS0038794 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 7.6e-08 62.8 193 29.5
Duzib170G0431 Durio zibethinus HOM05D008023 ORTHO05D002944 7.6e-08 62.8 629 23.1
RcHm_v2.0_Chr5g0031461 Rosa chinensis HOM05D008023 ORTHO05D002944 7.6e-08 62.8 133 33.1
CSS0022203 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 1.0e-07 62.4 137 30.7
Glyma.13G291600 Glycine max HOM05D004563 ORTHO05D002944 1.3e-07 62.0 450 23.6
Migut.M00253 Erythranthe guttata HOM05D004563 ORTHO05D002944 1.7e-07 61.6 399 24.8
Gohir.D11G306100 Gossypium hirsutum HOM05D008023 ORTHO05D002944 1.7e-07 61.6 120 37.5
Manes.13G138000 Manihot esculenta HOM05D004563 ORTHO05D002944 1.7e-07 61.6 480 23.1
Sp4g13600 Schrenkiella parvula HOM05D004563 ORTHO05D002944 1.7e-07 61.6 117 36.8
FvH4_3g18640 Fragaria vesca HOM05D008023 ORTHO05D002944 2.2e-07 61.2 133 30.8
FAN11G0626 Fragaria x ananassa HOM05D008023 ORTHO05D002944 2.2e-07 61.2 133 30.8
Gohir.D05G344300 Gossypium hirsutum HOM05D008023 ORTHO05D002944 2.2e-07 61.2 198 30.3
Gorai.009G372300 Gossypium raimondii HOM05D008023 ORTHO05D002944 2.2e-07 61.2 198 30.3
Lsat_1_v5_gn_8_140081 Lactuca sativa HOM05D004563 ORTHO05D002944 2.2e-07 61.2 57 56.1
Lj8C151T6 Lonicera japonica HOM05D008023 ORTHO05D010897 2.2e-07 61.2 456 24.8
Cpa.g.sc209.31 Carica papaya HOM05D004563 ORTHO05D002944 2.9e-07 60.8 442 26.5
CSS0041377 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 3.8e-07 60.5 137 30.7
FAN25G1709 Fragaria x ananassa HOM05D008023 ORTHO05D002944 3.8e-07 60.5 133 30.8
Medtr2g091180 Medicago truncatula HOM05D004563 ORTHO05D002944 3.8e-07 60.5 436 22.2
AL4G26310 Arabidopsis lyrata HOM05D004563 ORTHO05D002944 4.9e-07 60.1 118 39.0
BcaB02g10364 Brassica carinata HOM05D004563 ORTHO05D002944 4.9e-07 60.1 69 49.3
VMungo1127G0722 Vigna mungo HOM05D008023 ORTHO05D002944 4.9e-07 60.1 375 26.7
CsaV3_6G018840 Cucumis sativus L. HOM05D004563 ORTHO05D002944 6.5e-07 59.7 447 23.7
Aa31LG5G5790 Aethionema arabicum HOM05D004563 ORTHO05D002944 8.4e-07 59.3 61 54.1
AT2G31130 Arabidopsis thaliana HOM05D004563 ORTHO05D002944 8.4e-07 59.3 69 49.3
CSS0039922 Camellia sinensis var. sinensis HOM05D014353 ORTHO05D002944 8.4e-07 59.3 451 24.8
Gorai.007G325900 Gossypium raimondii HOM05D008023 ORTHO05D002944 8.4e-07 59.3 110 36.4
THA.LOC104800859 Tarenaya hassleriana HOM05D004563 ORTHO05D002944 8.4e-07 59.3 451 24.4
arahy.Tifrunner.gnm1.ann1.65XND6 Arachis hypogaea HOM05D004563 ORTHO05D002944 1.1e-06 58.9 443 20.8
COL.COLO4_33545 Corchorus olitorius HOM05D004563 ORTHO05D002944 1.1e-06 58.9 118 31.4
RcHm_v2.0_Chr2g0129081 Rosa chinensis HOM05D004563 ORTHO05D002944 1.1e-06 58.9 451 21.1
Solyc07g062640.3 Solanum lycopersicum HOM05D018586 ORTHO05D002944 1.1e-06 58.9 337 25.2
Duzib192G1010 Durio zibethinus HOM05D004563 ORTHO05D017903 1.4e-06 58.5 475 21.1
FAN16G2995 Fragaria x ananassa HOM05D008023 ORTHO05D002944 1.4e-06 58.5 133 30.1
FAN21G3564 Fragaria x ananassa HOM05D008023 ORTHO05D002944 1.4e-06 58.5 133 30.1
Gohir.A10G031400 Gossypium hirsutum HOM05D004563 ORTHO05D002944 1.4e-06 58.5 92 39.1
Sed0004710 Sechium edule HOM05D004563 ORTHO05D002944 1.4e-06 58.5 199 31.2
Ca_01462_v3 Cicer arietinum L. HOM05D004563 ORTHO05D002944 1.9e-06 58.2 457 23.4
Duzib235G1377 Durio zibethinus HOM05D004563 ORTHO05D002944 1.9e-06 58.2 106 37.7
Gohir.A04G038800 Gossypium hirsutum HOM05D008023 ORTHO05D002944 1.9e-06 58.2 198 29.3
SalBow7G0314 Salvia bowleyana HOM05D004563 ORTHO05D002944 1.9e-06 58.2 443 22.1
CSS0015057 Camellia sinensis var. sinensis HOM05D004563 ORTHO05D002944 2.5e-06 57.8 167 32.3
THA.LOC104800862 Tarenaya hassleriana HOM05D004563 ORTHO05D002944 2.5e-06 57.8 445 23.1
BcaC01g05977 Brassica carinata HOM05D004563 ORTHO05D002944 3.2e-06 57.4 128 36.7
C03p20530 Brassica napus HOM05D004563 ORTHO05D002944 3.2e-06 57.4 128 36.7
Nitab4.5_0006539g0020 Nicotiana tabacum HOM05D018586 ORTHO05D002944 3.2e-06 57.4 346 25.1
Dinv15459 Davidia involucrata HOM05D004563 ORTHO05D002944 4.2e-06 57.0 425 24.9
Peaxi162Scf00384g00511 Petunia axillaris HOM05D004563 ORTHO05D002944 4.2e-06 57.0 111 33.3
TAR627G0246 Trochodendron aralioides HOM05D008023 ORTHO05D002944 4.2e-06 57.0 84 39.3
Gohir.A11G287000 Gossypium hirsutum HOM05D008023 ORTHO05D002944 5.5e-06 56.6 110 35.5
Lalb_Chr03g0029881 Lupinus albus HOM05D004563 ORTHO05D002944 7.1e-06 56.2 453 23.8
Sed0020403 Sechium edule HOM05D004563 ORTHO05D002944 7.1e-06 56.2 456 23.5
BcaB01g04062 Brassica carinata HOM05D004563 ORTHO05D002944 9.3e-06 55.8 56 51.8
BcaC02g11198 Brassica carinata HOM05D004563 ORTHO05D002944 9.3e-06 55.8 69 46.4
C04p19350 Brassica napus HOM05D004563 ORTHO05D002944 9.3e-06 55.8 69 46.4
BolC3t14433H Brassica oleracea HOM05D004563 ORTHO05D002944 9.3e-06 55.8 128 35.9
BolC4t23467H Brassica oleracea HOM05D004563 ORTHO05D002944 9.3e-06 55.8 69 46.4
Carub.0004s1239 Capsella rubella HOM05D004563 ORTHO05D002944 9.3e-06 55.8 61 52.5
CARHR124710 Cardamine hirsuta HOM05D004563 ORTHO05D002944 9.3e-06 55.8 70 48.6
Cpa.g.sc131.62 Carica papaya HOM05D008023 ORTHO05D002944 9.3e-06 55.8 327 26.9
MD10G1281200 Malus domestica HOM05D016724 ORTHO05D017903 9.3e-06 55.8 445 23.6
Medtr8g463800 Medicago truncatula HOM05D008023 ORTHO05D002944 9.3e-06 55.8 500 24.6
PGSC0003DMG400012394 Solanum tuberosum HOM05D018586 ORTHO05D002944 9.3e-06 55.8 344 27.3
SGA_v2.0_scaffold73G24197 Striga asiatica HOM05D008023 ORTHO05D002944 9.3e-06 55.8 460 24.6


User provided reference genes

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