Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G00257 Aquilegia oxysepala HOM05D006665 ORTHO05D008327 0.0e+00 1378.6 685 100.0
PSO170G0566 Papaver somniferum HOM05D000074 ORTHO05D000220 2.8e-166 589.7 377 75.1
Nn3g21119 Nelumbo nucifera HOM05D006665 ORTHO05D008327 2.0e-164 583.6 375 73.3
TAR627G0088 Trochodendron aralioides HOM05D006665 ORTHO05D008327 1.4e-160 570.9 375 73.3
Cfa000642 Carpinus fangiana HOM05D006665 ORTHO05D008327 2.2e-158 563.5 371 70.1
GSVIVG01021249001 Vitis vinifera HOM05D006665 ORTHO05D008327 2.7e-153 546.6 375 68.8
QL05p048519 Quercus lobata HOM05D006665 ORTHO05D008327 1.8e-152 543.9 372 68.8
CSS0008142 Camellia sinensis var. sinensis HOM05D006665 ORTHO05D008327 4.0e-152 542.7 371 69.0
Cc02_g15490 Coffea canephora HOM05D006665 ORTHO05D008327 1.5e-151 540.8 377 65.8
Thecc.06G166800 Theobroma cacao HOM05D006665 ORTHO05D008327 2.8e-150 536.6 381 65.6
MBI07_g09544_MAGBIO Magnolia biondii HOM05D006665 ORTHO05D008327 5.4e-149 532.3 380 67.1
PGR042G0915 Punica granatum HOM05D006665 ORTHO05D008327 3.8e-147 526.2 376 64.9
Potri.011G069700 Populus trichocarpa HOM05D006665 ORTHO05D008327 3.6e-145 519.6 376 65.7
CsaV3_1G033140 Cucumis sativus L. HOM05D006665 ORTHO05D008327 8.0e-145 518.5 373 63.8
TWI73G0293 Tripterygium wilfordii HOM05D006665 ORTHO05D008327 1.0e-144 518.1 373 64.3
HanXRQChr15g0480791 Helianthus annuus HOM05D006665 ORTHO05D008327 1.4e-144 517.7 373 66.8
Duzib235G0558 Durio zibethinus HOM05D006665 ORTHO05D008327 1.8e-144 517.3 384 62.2
Ciclev10015641m.g Citrus clementina HOM05D006665 ORTHO05D008327 4.0e-144 516.2 372 64.5
Sabra11G0053800 Salix brachista HOM05D006665 ORTHO05D008327 6.8e-144 515.4 376 65.2
Prupe.4G065800 Prunus persica HOM05D006665 ORTHO05D008327 1.2e-143 514.6 376 66.5
CANSAT80G2447 Cannabis sativa HOM05D000074 ORTHO05D000220 2.0e-143 513.8 372 65.1
Dinv32346 Davidia involucrata HOM05D006665 ORTHO05D008327 2.0e-143 513.8 375 66.1
MD05G1296500 Malus domestica HOM05D006665 ORTHO05D008327 2.6e-143 513.5 374 66.6
Manes.17G058400 Manihot esculenta HOM05D006665 ORTHO05D008327 2.6e-143 513.5 373 64.9
Gorai.011G037800 Gossypium raimondii HOM05D006665 ORTHO05D008327 7.5e-143 511.9 377 61.8
Sed0010934 Sechium edule HOM05D006665 ORTHO05D008327 9.8e-143 511.5 369 64.2
Gohir.D10G035900 Gossypium hirsutum HOM05D006665 ORTHO05D008327 1.3e-142 511.1 377 61.8
Solyc02g072230.3 Solanum lycopersicum HOM05D006665 ORTHO05D008327 1.3e-142 511.1 374 63.6
Sopen02g021210 Solanum pennellii HOM05D006665 ORTHO05D008327 1.3e-142 511.1 374 63.4
CiPaw.09G072200 Carya illinoinensis HOM05D006665 ORTHO05D008327 4.9e-142 509.2 371 64.2
Gohir.A10G035200 Gossypium hirsutum HOM05D006665 ORTHO05D008327 1.4e-141 507.7 377 61.3
COL.COLO4_31251 Corchorus olitorius HOM05D006665 ORTHO05D008327 4.1e-141 506.1 399 61.4
PGSC0003DMG400028425 Solanum tuberosum HOM05D006665 ORTHO05D008327 4.1e-141 506.1 374 63.4
Eucgr.E04353 Eucalyptus grandis HOM05D006665 ORTHO05D008327 9.2e-141 505.0 380 62.9
RcHm_v2.0_Chr5g0011451 Rosa chinensis HOM05D006665 ORTHO05D008327 2.7e-140 503.4 377 66.3
Eucgr.E02766 Eucalyptus grandis HOM05D006665 ORTHO05D008327 2.3e-139 500.4 380 62.4
DCAR_005186 Daucus carota HOM05D006665 ORTHO05D008327 3.9e-139 499.6 372 62.9
THA.LOC104812882 Tarenaya hassleriana HOM05D006665 ORTHO05D008327 5.0e-139 499.2 380 62.9
MSTRG.7424 Avicennia marina HOM05D006665 ORTHO05D008327 6.6e-139 498.8 374 63.9
Lalb_Chr13g0295211 Lupinus albus HOM05D006665 ORTHO05D008327 6.6e-139 498.8 375 63.7
FAN23G0824 Fragaria x ananassa HOM05D006665 ORTHO05D008327 2.5e-138 496.9 377 64.7
Nitab4.5_0008526g0030 Nicotiana tabacum HOM05D006665 ORTHO05D008327 2.5e-138 496.9 374 62.8
FvH4_1g07520 Fragaria vesca HOM05D006665 ORTHO05D008327 3.3e-138 496.5 377 64.2
ECA236G1698 Erigeron canadensis HOM05D000074 ORTHO05D000220 9.5e-138 495.0 365 64.9
FAN26G0384 Fragaria x ananassa HOM05D006665 ORTHO05D008327 2.1e-137 493.8 377 63.7
FAN19G1242 Fragaria x ananassa HOM05D006665 ORTHO05D008327 1.4e-136 491.1 378 64.0
Lj2C318T4 Lonicera japonica HOM05D006665 ORTHO05D008327 4.0e-136 489.6 375 65.1
CARHR176220 Cardamine hirsuta HOM05D006665 ORTHO05D008327 2.6e-135 486.9 374 59.6
Nitab4.5_0000437g0180 Nicotiana tabacum HOM05D006665 ORTHO05D008327 9.8e-135 485.0 381 60.9
Carub.0008s0223 Capsella rubella HOM05D006665 ORTHO05D008327 1.4e-133 481.1 377 59.9
Migut.M01013 Erythranthe guttata HOM05D006665 ORTHO05D008327 1.9e-133 480.7 374 61.2
AT5G45760 Arabidopsis thaliana HOM05D006665 ORTHO05D008327 2.4e-133 480.3 377 61.0
AL8G12850 Arabidopsis lyrata HOM05D006665 ORTHO05D008327 5.4e-133 479.2 377 61.0
Sc05g0006960 Simmondsia chinensis HOM05D006665 ORTHO05D008327 9.2e-133 478.4 369 62.6
ClCG03G007500 Citrullus lanatus HOM05D000074 ORTHO05D000220 1.6e-132 477.6 368 61.1
Sp2g10670 Schrenkiella parvula HOM05D006665 ORTHO05D008327 2.0e-132 477.2 376 59.8
Os01g0205100 Oryza sativa ssp. japonica HOM05D006665 ORTHO05D008327 1.0e-131 474.9 376 59.3
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 7.3e-130 468.8 370 59.2
Sabra11G0057300 Salix brachista HOM05D000074 ORTHO05D000220 1.2e-129 468.0 351 63.2
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 1.6e-129 467.6 370 59.5
Medtr8g086605 Medicago truncatula HOM05D006665 ORTHO05D008327 2.8e-129 466.8 378 59.8
Phvul.002G240300 Phaseolus vulgaris HOM05D006665 ORTHO05D008327 1.1e-128 464.9 377 58.6
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 1.4e-128 464.5 370 58.9
TPR.G6756 Trifolium pratense HOM05D006665 ORTHO05D008327 1.4e-128 464.5 378 58.7
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 1.8e-128 464.2 368 58.7
Peaxi162Scf00371g00319 Petunia axillaris HOM05D006665 ORTHO05D008327 3.7e-126 456.4 374 59.1
Glyma.08G117600 Glycine max HOM05D006665 ORTHO05D008327 1.1e-125 454.9 377 56.8
Glyma.05G160032 Glycine max HOM05D006665 ORTHO05D008327 3.2e-125 453.4 377 57.6
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 4.1e-125 453.0 361 59.3
EL10Ac8g20571 Beta vulgaris HOM05D006665 ORTHO05D008327 1.2e-124 451.4 371 59.6
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 4.6e-124 449.5 362 58.3
FAN26G1216 Fragaria x ananassa HOM05D006665 ORTHO05D008327 6.0e-124 449.1 377 59.7
Thhalv10000923m.g Eutrema salsugineum HOM05D006665 ORTHO05D008327 7.8e-124 448.7 401 55.6
arahy.Tifrunner.gnm1.ann1.L41MS4 Arachis hypogaea HOM05D006665 ORTHO05D008327 6.6e-123 445.7 377 58.9
Aa31LG9G7310 Aethionema arabicum HOM05D006665 ORTHO05D008327 1.5e-122 444.5 384 57.3
Lj4g0005276 Lotus japonicus HOM05D000074 ORTHO05D008327 1.9e-122 444.1 370 58.4
arahy.Tifrunner.gnm1.ann1.UF726L Arachis hypogaea HOM05D006665 ORTHO05D008327 2.3e-120 437.2 371 58.5
AUR62027710 Chenopodium quinoa HOM05D006665 ORTHO05D008327 3.4e-119 433.3 363 57.9
Actinidia07650 Actinidia chinensis HOM05D006665 ORTHO05D008327 9.3e-109 398.7 263 69.2
SalBow8G2667 Salvia bowleyana HOM05D000074 ORTHO05D000220 5.3e-104 382.9 388 50.0
SEGI_17628 Sequoiadendron giganteum HOM05D006665 ORTHO05D008327 5.3e-104 382.9 381 48.6
ATR0012G051 Amborella trichopoda HOM05D006665 ORTHO05D008327 6.9e-104 382.5 311 60.5
Ah.14g087040 Amaranthus hybridus HOM05D006665 ORTHO05D008327 8.1e-97 359.0 397 48.9
Pp3c18_2320 Physcomitrium patens HOM05D006665 ORTHO05D008327 1.9e-85 321.2 379 43.8
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 1.6e-84 318.2 355 49.9
Zm00001eb120830 Zea mays HOM05D006665 ORTHO05D008327 2.1e-81 307.8 296 50.3
Mapoly0020s0147 Marchantia polymorpha HOM05D006665 ORTHO05D008327 4.5e-79 300.1 374 43.0
Atru.chr10.1583 Acer truncatum HOM05D006665 ORTHO05D008327 7.7e-71 272.7 183 67.2
vmacro16044 Vaccinium macrocarpon HOM05D006665 ORTHO05D008327 1.0e-70 272.3 224 61.6
AagrBONN_evm.TU.Sc2ySwM_117.2766 Anthoceros agrestis HOM05D006665 ORTHO05D008327 2.2e-70 271.2 320 44.4
SMO118G0425 Selaginella moellendorffii HOM05D006665 ORTHO05D008327 3.2e-69 267.3 378 38.1
Lsat_1_v5_gn_7_25921 Lactuca sativa HOM05D006665 ORTHO05D008327 2.0e-63 248.1 208 58.7
Rhsim02G0145600 Rhododendron simsii HOM05D006665 ORTHO05D008327 2.0e-63 248.1 208 59.6
Haze_06187 Corylus avellana HOM05D006665 ORTHO05D008327 9.4e-61 239.2 184 63.6
VMungo0251G1318 Vigna mungo HOM05D006665 ORTHO05D008327 4.7e-60 236.9 221 52.0
Atru.chr10.1584 Acer truncatum HOM05D006665 ORTHO05D008327 1.5e-58 231.9 187 60.4
CBR_g34019 Chara braunii HOM05D006665 ORTHO05D008327 5.7e-58 229.9 413 34.4
AUR62039464 Chenopodium quinoa HOM05D006665 ORTHO05D008327 5.7e-58 229.9 186 60.2
BcaB06g27285 Brassica carinata HOM05D006665 ORTHO05D008327 7.4e-58 229.6 249 47.8
Cpa.g.sc7.98 Carica papaya HOM05D006665 ORTHO05D008327 2.2e-54 218.0 149 63.8
Hund25815 Selenicereus undatus HOM05D006665 ORTHO05D008327 5.0e-54 216.9 186 58.1
Dinv12760 Davidia involucrata HOM05D006665 ORTHO05D008327 8.5e-54 216.1 253 48.6
Hma1.2p1_0113F.1_g055090 Hydrangea macrophylla HOM05D006665 ORTHO05D008327 2.3e-51 208.0 212 51.9
Hma1.2p1_0113F.1_g055096 Hydrangea macrophylla HOM05D006665 ORTHO05D008327 2.3e-51 208.0 212 51.9
BcaB04g18653 Brassica carinata HOM05D006665 ORTHO05D008327 1.0e-43 182.6 153 56.2
SGA_v2.0_scaffold1G00072 Striga asiatica HOM05D006665 ORTHO05D008327 5.7e-42 176.8 126 57.9
vmacro16043 Vaccinium macrocarpon HOM05D006665 ORTHO05D008327 1.9e-37 161.8 101 67.3
Psat7g069080 Pisum sativum HOM05D006665 ORTHO05D008327 5.5e-37 160.2 125 56.8
Oeu043117.1 Olea europaea HOM05D006665 ORTHO05D008327 1.2e-36 159.1 149 55.0
Psat7g069040 Pisum sativum HOM05D006665 ORTHO05D008327 4.0e-35 154.1 271 36.5
Psat2g000080 Pisum sativum HOM05D006665 ORTHO05D008327 2.6e-34 151.4 141 53.9
Haze_06186 Corylus avellana HOM05D006665 ORTHO05D008327 1.3e-33 149.1 143 51.0
RcHm_v2.0_Chr5g0011471 Rosa chinensis HOM05D006665 ORTHO05D008327 7.0e-32 143.3 173 48.0
Cre16.g678400 Chlamydomonas reinhardtii HOM05D006665 ORTHO05D008327 6.4e-25 120.2 254 30.7
SEGI_34445 Sequoiadendron giganteum HOM05D006665 ORTHO05D008327 1.7e-22 112.1 105 45.7
arahy.Tifrunner.gnm1.ann1.XDX40G Arachis hypogaea HOM05D006665 ORTHO05D008327 1.6e-20 105.5 78 59.0
arahy.Tifrunner.gnm1.ann1.H6TAT4 Arachis hypogaea HOM05D006665 ORTHO05D008327 1.8e-19 102.1 98 52.0
MCO11G387 Micromonas commoda HOM05D006665 ORTHO05D008327 5.8e-18 97.1 367 24.0
FAN11G1287 Fragaria x ananassa HOM05D006665 ORTHO05D008327 7.0e-16 90.1 185 35.7
FAN25G1258 Fragaria x ananassa HOM05D006665 ORTHO05D008327 7.0e-16 90.1 67 67.2
FvH4_3g07410 Fragaria vesca HOM05D006665 ORTHO05D008327 1.3e-14 85.9 162 40.1
Sabra04G0038600 Salix brachista HOM05D000074 ORTHO05D000220 5.0e-14 84.0 115 46.1
VMungo0251G0552 Vigna mungo HOM05D006665 ORTHO05D008327 8.6e-14 83.2 61 57.4
Thecc.04G160500 Theobroma cacao HOM05D000621 ORTHO05D000421 8.3e-09 66.6 102 37.3
Ah.11g049090 Amaranthus hybridus HOM05D000621 ORTHO05D000421 1.1e-08 66.2 103 40.8
RcHm_v2.0_Chr3g0487021 Rosa chinensis HOM05D000621 ORTHO05D000421 2.4e-08 65.1 112 40.2
EL10As5g23609 Beta vulgaris HOM05D000621 ORTHO05D000421 7.1e-08 63.5 98 39.8
Prupe.3G007100 Prunus persica HOM05D000621 ORTHO05D000421 7.1e-08 63.5 99 40.4
AUR62011758 Chenopodium quinoa HOM05D000621 ORTHO05D000421 1.6e-07 62.4 98 36.7
AUR62024604 Chenopodium quinoa HOM05D000621 ORTHO05D000421 1.6e-07 62.4 98 36.7
Ciclev10018775m.g Citrus clementina HOM05D000621 ORTHO05D000421 1.6e-07 62.4 217 30.0
COL.COLO4_23189 Corchorus olitorius HOM05D000621 ORTHO05D000421 2.7e-07 61.6 132 31.8
C04p00660 Brassica napus HOM05D000621 ORTHO05D000421 3.5e-07 61.2 94 37.2
Oeu048871.1 Olea europaea HOM05D000621 ORTHO05D000421 3.5e-07 61.2 101 35.6
Oeu062261.1 Olea europaea HOM05D000621 ORTHO05D000421 4.6e-07 60.8 101 35.6
Peaxi162Scf00770g00127 Petunia axillaris HOM05D000621 ORTHO05D000421 4.6e-07 60.8 98 34.7
PGSC0003DMG400009053 Solanum tuberosum HOM05D000621 ORTHO05D000421 4.6e-07 60.8 112 35.7
Aqoxy6G00423 Aquilegia oxysepala HOM05D000621 ORTHO05D000421 7.8e-07 60.1 159 34.0
Sopen01g031010 Solanum pennellii HOM05D000621 ORTHO05D000421 7.8e-07 60.1 112 34.8
CAN.G293.6 Capsicum annuum HOM05D000621 ORTHO05D000421 1.0e-06 59.7 108 32.4
FAN26G2638 Fragaria x ananassa HOM05D000621 ORTHO05D000421 1.0e-06 59.7 104 38.5
FvH4_1g26800 Fragaria vesca HOM05D000621 ORTHO05D000421 1.3e-06 59.3 104 38.5
FAN19G2659 Fragaria x ananassa HOM05D000621 ORTHO05D000421 1.3e-06 59.3 104 38.5
FAN23G0943 Fragaria x ananassa HOM05D000621 ORTHO05D000421 1.3e-06 59.3 104 38.5
FAN28G1859 Fragaria x ananassa HOM05D000621 ORTHO05D000421 1.3e-06 59.3 104 38.5
Gohir.A01G035700 Gossypium hirsutum HOM05D000621 ORTHO05D000421 1.3e-06 59.3 162 27.8
ATR0686G219 Amborella trichopoda HOM05D000621 ORTHO05D000421 1.7e-06 58.9 103 34.0
BcaC02g12582 Brassica carinata HOM05D000621 ORTHO05D000421 2.3e-06 58.5 95 35.8
BolC4t21699H Brassica oleracea HOM05D000621 ORTHO05D000421 2.3e-06 58.5 95 35.8
Cc01_g21640 Coffea canephora HOM05D000621 ORTHO05D000421 2.3e-06 58.5 103 34.0
Dinv33142 Davidia involucrata HOM05D000621 ORTHO05D000421 2.3e-06 58.5 121 32.2
MD09G1286400 Malus domestica HOM05D000621 ORTHO05D000421 2.3e-06 58.5 97 38.1
Hund09660 Selenicereus undatus HOM05D000621 ORTHO05D000421 2.3e-06 58.5 101 37.6
Aqoxy2G02639 Aquilegia oxysepala HOM05D000621 ORTHO05D000421 3.0e-06 58.2 103 34.0
Hma1.2p1_0052F.1_g030670 Hydrangea macrophylla HOM05D000621 ORTHO05D000421 3.0e-06 58.2 106 31.1
MD17G1278800 Malus domestica HOM05D000621 ORTHO05D000421 3.9e-06 57.8 99 38.4
THA.LOC104823716 Tarenaya hassleriana HOM05D000621 ORTHO05D000421 3.9e-06 57.8 97 39.2
Aqoxy5G00224 Aquilegia oxysepala HOM05D000621 ORTHO05D000421 5.1e-06 57.4 224 27.2
Gohir.D01G023580 Gossypium hirsutum HOM05D000621 ORTHO05D000421 5.1e-06 57.4 162 27.2
Gorai.002G031600 Gossypium raimondii HOM05D000621 ORTHO05D000421 5.1e-06 57.4 162 27.2
Nn4g25511 Nelumbo nucifera HOM05D000621 ORTHO05D000421 5.1e-06 57.4 102 38.2
TWI14G0775 Tripterygium wilfordii HOM05D000621 ORTHO05D000421 5.1e-06 57.4 109 34.9
Aqoxy2G02645 Aquilegia oxysepala HOM05D000621 ORTHO05D000421 6.6e-06 57.0 102 40.2
DCAR_005738 Daucus carota HOM05D000621 ORTHO05D000421 6.6e-06 57.0 100 36.0
Thecc.01G318600 Theobroma cacao HOM05D000621 ORTHO05D000421 6.6e-06 57.0 98 33.7
MSTRG.27927 Avicennia marina HOM05D000621 ORTHO05D000421 8.6e-06 56.6 104 31.7
BraA05t19058Z Brassica rapa HOM05D000621 ORTHO05D000421 8.6e-06 56.6 99 34.3
TWI59G0701 Tripterygium wilfordii HOM05D000621 ORTHO05D000421 8.6e-06 56.6 102 36.3
GSVIVG01028157001 Vitis vinifera HOM05D000621 ORTHO05D000421 8.6e-06 56.6 160 28.8


User provided reference genes

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