Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G00249 Aquilegia oxysepala HOM05D005007 ORTHO05D006053 1.9e-40 168.7 83 100.0
MBI06_g18688_MAGBIO Magnolia biondii HOM05D005007 ORTHO05D006053 1.0e-17 93.2 89 58.4
Thecc.07G118400 Theobroma cacao HOM05D005007 ORTHO05D006053 2.9e-17 91.7 88 56.8
Ciclev10022947m.g Citrus clementina HOM05D005007 ORTHO05D006053 6.5e-17 90.5 78 62.8
Nn3g21105 Nelumbo nucifera HOM05D005007 ORTHO05D006053 6.5e-17 90.5 81 58.0
Dinv12754 Davidia involucrata HOM05D005007 ORTHO05D006053 8.5e-17 90.1 84 58.3
Dinv32340 Davidia involucrata HOM05D005007 ORTHO05D006053 8.5e-17 90.1 84 61.9
Lalb_Chr03g0031211 Lupinus albus HOM05D005007 ORTHO05D006053 8.5e-17 90.1 79 59.5
Glyma.05G160900 Glycine max HOM05D005007 ORTHO05D006053 1.5e-16 89.4 74 62.2
Actinidia35601 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.9e-16 89.0 82 59.8
QL08p025919 Quercus lobata HOM05D005007 ORTHO05D006053 1.9e-16 89.0 74 60.8
Glyma.08G118300 Glycine max HOM05D005007 ORTHO05D006053 3.2e-16 88.2 75 61.3
Glyma.06G227850 Glycine max HOM05D005007 ORTHO05D006053 4.2e-16 87.8 83 54.2
Glyma.06G227900 Glycine max HOM05D005007 ORTHO05D006053 4.2e-16 87.8 83 54.2
Glyma.12G156400 Glycine max HOM05D005007 ORTHO05D006053 7.2e-16 87.0 84 54.8
Manes.17G059100 Manihot esculenta HOM05D005007 ORTHO05D006053 9.4e-16 86.7 80 57.5
Medtr8g087320 Medicago truncatula HOM05D005007 ORTHO05D006053 1.2e-15 86.3 71 59.2
QL05p049974 Quercus lobata HOM05D005007 ORTHO05D006053 1.2e-15 86.3 73 63.0
Haze_09314 Corylus avellana HOM05D005007 ORTHO05D006053 1.6e-15 85.9 67 59.7
Phvul.011G165600 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 1.6e-15 85.9 79 58.2
Actinidia35210 Actinidia chinensis HOM05D005007 ORTHO05D006053 2.1e-15 85.5 60 68.3
CiPaw.12G113100 Carya illinoinensis HOM05D005007 ORTHO05D006053 2.1e-15 85.5 81 54.3
Cc02_g15570 Coffea canephora HOM05D005007 ORTHO05D006053 2.7e-15 85.1 83 55.4
COL.COLO4_17528 Corchorus olitorius HOM05D005007 ORTHO05D006053 2.7e-15 85.1 92 54.3
Hma1.2p1_0934F.1_g238510 Hydrangea macrophylla HOM05D005007 ORTHO05D006053 2.7e-15 85.1 81 54.3
PGR042G3787 Punica granatum HOM05D005007 ORTHO05D006053 2.7e-15 85.1 65 67.7
Thecc.06G165800 Theobroma cacao HOM05D005007 ORTHO05D006053 2.7e-15 85.1 85 54.1
Rhsim06G0209000 Rhododendron simsii HOM05D005007 ORTHO05D006053 3.6e-15 84.7 71 62.0
VMungo1127G1862 Vigna mungo HOM05D005007 ORTHO05D006053 3.6e-15 84.7 79 54.4
Atru.chr2.2102 Acer truncatum HOM05D005007 ORTHO05D006053 4.7e-15 84.3 78 61.5
GSVIVG01021255001 Vitis vinifera HOM05D005007 ORTHO05D006053 4.7e-15 84.3 73 63.0
Lsat_1_v5_gn_7_25701 Lactuca sativa HOM05D005007 ORTHO05D006053 6.1e-15 84.0 81 56.8
Prupe.4G161500 Prunus persica HOM05D005007 ORTHO05D006053 6.1e-15 84.0 78 57.7
HanXRQChr02g0038411 Helianthus annuus HOM05D005007 ORTHO05D006053 8.0e-15 83.6 82 56.1
Ciclev10017907m.g Citrus clementina HOM05D005007 ORTHO05D006053 1.0e-14 83.2 85 54.1
Phvul.002G241000 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 1.0e-14 83.2 75 57.3
CSS0026874 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 1.4e-14 82.8 73 61.6
Duzib160G0236 Durio zibethinus HOM05D005007 ORTHO05D006053 1.4e-14 82.8 66 62.1
Potri.011G070400 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.4e-14 82.8 65 64.6
TWI09G0208 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 1.4e-14 82.8 90 48.9
TWI39G0558 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 1.4e-14 82.8 80 60.0
Manes.16G043000 Manihot esculenta HOM05D005007 ORTHO05D006053 1.8e-14 82.4 85 52.9
COL.COLO4_31238 Corchorus olitorius HOM05D005007 ORTHO05D006053 3.0e-14 81.6 88 51.1
DCAR_003989 Daucus carota HOM05D005007 ORTHO05D006053 3.0e-14 81.6 83 57.8
Manes.15G095801 Manihot esculenta HOM05D005007 ORTHO05D006053 3.0e-14 81.6 71 60.6
Oeu039881.1 Olea europaea HOM05D005007 ORTHO05D006053 3.0e-14 81.6 61 63.9
Sabra04G0040400 Salix brachista HOM05D005007 ORTHO05D006053 3.0e-14 81.6 90 52.2
Actinidia39520 Actinidia chinensis HOM05D005007 ORTHO05D006053 4.0e-14 81.3 78 56.4
CDE10G0299 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 5.2e-14 80.9 83 54.2
Oeu060171.1 Olea europaea HOM05D005007 ORTHO05D006053 5.2e-14 80.9 70 58.6
Cpa.g.sc77.26 Carica papaya HOM05D005007 ORTHO05D006053 8.8e-14 80.1 81 54.3
SalBow7G2341 Salvia bowleyana HOM05D005007 ORTHO05D006053 8.8e-14 80.1 75 58.7
Ca_17898_v3 Cicer arietinum L. HOM05D005007 ORTHO05D006053 1.2e-13 79.7 65 60.0
ECA236G3784 Erigeron canadensis HOM05D005007 ORTHO05D006053 1.5e-13 79.3 71 59.2
Gohir.A06G133600 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.0e-13 79.0 80 52.5
Gohir.D06G138700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.0e-13 79.0 74 55.4
TPR.G6805 Trifolium pratense HOM05D000213 ORTHO05D000426 2.0e-13 79.0 66 57.6
Cpa.g.sc7.108 Carica papaya HOM05D005007 ORTHO05D006053 2.6e-13 78.6 86 53.5
Gorai.010G161300 Gossypium raimondii HOM05D005007 ORTHO05D006053 2.6e-13 78.6 74 55.4
arahy.Tifrunner.gnm1.ann1.HJBU6U Arachis hypogaea HOM05D005007 ORTHO05D006053 3.4e-13 78.2 77 55.8
CiPaw.09G137100 Carya illinoinensis HOM05D005007 ORTHO05D006053 3.4e-13 78.2 82 53.7
ClCG07G010220 Citrullus lanatus HOM05D005007 ORTHO05D006053 3.4e-13 78.2 88 50.0
Duzib192G0425 Durio zibethinus HOM05D005007 ORTHO05D006053 3.4e-13 78.2 68 57.4
Potri.004G061100 Populus trichocarpa HOM05D005007 ORTHO05D006053 3.4e-13 78.2 76 55.3
RcHm_v2.0_Chr5g0030711 Rosa chinensis HOM05D005007 ORTHO05D006053 3.4e-13 78.2 80 56.2
DCAR_007938 Daucus carota HOM05D005007 ORTHO05D006053 4.4e-13 77.8 85 56.5
Lalb_Chr13g0295281 Lupinus albus HOM05D005007 ORTHO05D006053 4.4e-13 77.8 76 57.9
CANSAT35G0905 Cannabis sativa HOM05D005007 ORTHO05D006053 5.7e-13 77.4 70 58.6
Migut.H01413 Erythranthe guttata HOM05D005007 ORTHO05D006053 5.7e-13 77.4 74 54.1
arahy.Tifrunner.gnm1.ann1.VZS9XU Arachis hypogaea HOM05D005007 ORTHO05D006053 7.5e-13 77.0 75 56.0
AUR62039477 Chenopodium quinoa HOM05D005007 ORTHO05D006053 7.5e-13 77.0 75 54.7
Gohir.D01G042700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 7.5e-13 77.0 79 55.7
Gorai.002G053600 Gossypium raimondii HOM05D005007 ORTHO05D006053 7.5e-13 77.0 79 55.7
Lalb_Chr01g0006861 Lupinus albus HOM05D005007 ORTHO05D006053 9.8e-13 76.6 77 53.2
Sabra11G0055100 Salix brachista HOM05D005007 ORTHO05D006053 9.8e-13 76.6 65 61.5
Eucgr.F01249 Eucalyptus grandis HOM05D005007 ORTHO05D006053 1.3e-12 76.3 73 54.8
MD11G1264800 Malus domestica HOM05D005007 ORTHO05D006053 1.3e-12 76.3 78 52.6
Duzib235G0435 Durio zibethinus HOM05D005007 ORTHO05D006053 1.7e-12 75.9 77 53.2
Atru.chr10.1572 Acer truncatum HOM05D005007 ORTHO05D006053 2.2e-12 75.5 76 51.3
Haze_05357 Corylus avellana HOM05D005007 ORTHO05D006053 2.2e-12 75.5 66 56.1
Psat7g068680 Pisum sativum HOM05D005007 ORTHO05D006053 2.2e-12 75.5 67 58.2
Sabra11G0058300 Salix brachista HOM05D005007 ORTHO05D006053 2.2e-12 75.5 60 61.7
SalBow8G4395 Salvia bowleyana HOM05D005007 ORTHO05D006053 2.2e-12 75.5 61 57.4
vmacro11948 Vaccinium macrocarpon HOM05D005007 ORTHO05D006053 2.2e-12 75.5 70 57.1
CSS0021075 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 2.8e-12 75.1 86 51.2
Migut.H01416 Erythranthe guttata HOM05D005007 ORTHO05D006053 2.8e-12 75.1 65 56.9
Sabra16G0257800 Salix brachista HOM05D005007 ORTHO05D006053 2.8e-12 75.1 72 59.7
arahy.Tifrunner.gnm1.ann1.G1B0F8 Arachis hypogaea HOM05D005007 ORTHO05D006053 4.8e-12 74.3 75 56.0
Gohir.A05G153450 Gossypium hirsutum HOM05D005007 ORTHO05D006053 4.8e-12 74.3 84 51.2
Peaxi162Scf00202g00119 Petunia axillaris HOM05D005007 ORTHO05D006053 4.8e-12 74.3 79 58.2
Prupe.4G066600 Prunus persica HOM05D005007 ORTHO05D006053 4.8e-12 74.3 82 52.4
Gohir.A01G053200 Gossypium hirsutum HOM05D005007 ORTHO05D006053 6.3e-12 73.9 79 54.4
Gohir.D05G156101 Gossypium hirsutum HOM05D005007 ORTHO05D006053 6.3e-12 73.9 72 54.2
ATR0012G015 Amborella trichopoda HOM05D005007 ORTHO05D006053 1.1e-11 73.2 82 51.2
MD10G1275600 Malus domestica HOM05D005007 ORTHO05D006053 1.4e-11 72.8 81 51.9
Potri.001G393001 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.4e-11 72.8 85 55.3
CiPaw.11G159400 Carya illinoinensis HOM05D005007 ORTHO05D006053 1.8e-11 72.4 74 52.7
FvH4_3g07320 Fragaria vesca HOM05D005007 ORTHO05D006053 1.8e-11 72.4 72 58.3
FAN11G0120 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.8e-11 72.4 72 58.3
ClCG01G023890 Citrullus lanatus HOM05D005007 ORTHO05D006053 2.4e-11 72.0 70 54.3
MD00G1009400 Malus domestica HOM05D005007 ORTHO05D006053 2.4e-11 72.0 83 50.6
MD05G1295500 Malus domestica HOM05D005007 ORTHO05D006053 2.4e-11 72.0 83 50.6
MSTRG.7429 Avicennia marina HOM05D005007 ORTHO05D006053 3.1e-11 71.6 72 52.8
Sc16g0007670 Simmondsia chinensis HOM05D005007 ORTHO05D006053 3.1e-11 71.6 81 49.4
MELO3C007199.2 Cucumis melo HOM05D005007 ORTHO05D006053 4.1e-11 71.2 71 52.1
CsaV3_6G051040 Cucumis sativus L. HOM05D005007 ORTHO05D006053 4.1e-11 71.2 71 52.1
Actinidia18804 Actinidia chinensis HOM05D005007 ORTHO05D006053 5.4e-11 70.9 57 61.4
Rhsim02G0146700 Rhododendron simsii HOM05D005007 ORTHO05D006053 5.4e-11 70.9 81 49.4
RcHm_v2.0_Chr5g0011631 Rosa chinensis HOM05D005007 ORTHO05D006053 9.1e-11 70.1 60 61.7
FAN16G2723 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.2e-10 69.7 72 56.9
Lsat_1_v5_gn_5_126541 Lactuca sativa HOM05D005007 ORTHO05D006053 1.2e-10 69.7 84 54.8
Nitab4.5_0007471g0020 Nicotiana tabacum HOM05D005007 ORTHO05D006053 1.2e-10 69.7 65 66.2
Ah.14g087010 Amaranthus hybridus HOM05D005007 ORTHO05D006053 1.6e-10 69.3 74 51.4
FAN21G0366 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.6e-10 69.3 72 56.9
Nitab4.5_0000437g0140 Nicotiana tabacum HOM05D005007 ORTHO05D006053 2.7e-10 68.6 65 66.2
Migut.M00716 Erythranthe guttata HOM05D005007 ORTHO05D006053 3.5e-10 68.2 84 47.6
EL10Ac4g08365 Beta vulgaris HOM05D005007 ORTHO05D006053 4.5e-10 67.8 69 55.1
CsaV3_4G008110 Cucumis sativus L. HOM05D005007 ORTHO05D006053 4.5e-10 67.8 88 44.3
Thhalv10027446m.g Eutrema salsugineum HOM05D005007 ORTHO05D006053 4.5e-10 67.8 83 45.8
BcaB04g18501 Brassica carinata HOM05D005007 ORTHO05D006053 5.9e-10 67.4 76 50.0
Sed0025620 Sechium edule HOM05D005007 ORTHO05D006053 5.9e-10 67.4 61 60.7
PGSC0003DMG400028468 Solanum tuberosum HOM05D005007 ORTHO05D006053 5.9e-10 67.4 75 54.7
FAN25G2704 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.3e-09 66.2 72 55.6
Potri.011G108700 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.3e-09 66.2 82 51.2
Solyc02g072170.3 Solanum lycopersicum HOM05D005007 ORTHO05D006053 1.7e-09 65.9 74 54.1
Sopen02g021150 Solanum pennellii HOM05D005007 ORTHO05D006053 1.7e-09 65.9 74 54.1
Carub.0007s2243 Capsella rubella HOM05D005007 ORTHO05D006053 2.2e-09 65.5 85 45.9
CARHR225660 Cardamine hirsuta HOM05D005007 ORTHO05D006053 2.2e-09 65.5 79 46.8
Sed0011988 Sechium edule HOM05D005007 ORTHO05D006053 2.2e-09 65.5 80 47.5
BraA08t33391Z Brassica rapa HOM05D005007 ORTHO05D006053 2.9e-09 65.1 71 52.1
Actinidia16774 Actinidia chinensis HOM05D005007 ORTHO05D006053 3.8e-09 64.7 67 49.3
C03p81500 Brassica napus HOM05D005007 ORTHO05D006053 5.0e-09 64.3 69 50.7
BolC3t20421H Brassica oleracea HOM05D005007 ORTHO05D006053 5.0e-09 64.3 69 50.7
Nn6g34499 Nelumbo nucifera HOM05D005007 ORTHO05D006053 5.0e-09 64.3 70 52.9
Ah.09g233580 Amaranthus hybridus HOM05D005007 ORTHO05D006053 1.1e-08 63.2 64 50.0
Sed0017213 Sechium edule HOM05D005007 ORTHO05D006053 1.9e-08 62.4 63 50.8
HPP92_008753 Vanilla planifolia HOM05D005007 ORTHO05D006053 1.9e-08 62.4 79 43.0
Sp7g17510 Schrenkiella parvula HOM05D005007 ORTHO05D006053 3.2e-08 61.6 78 43.6
CDE10G1215 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 4.2e-08 61.2 51 66.7
Peaxi162Scf00111g01466 Petunia axillaris HOM05D005007 ORTHO05D006053 5.5e-08 60.8 68 48.5
DCAR_005144 Daucus carota HOM05D005007 ORTHO05D006053 7.2e-08 60.5 75 44.0
Potri.001G389150 Populus trichocarpa HOM05D005007 ORTHO05D006053 2.1e-07 58.9 82 50.0
unitig_0.g744 Utricularia gibba HOM05D005007 ORTHO05D006053 6.1e-07 57.4 52 53.8
Gorai.009G160600 Gossypium raimondii HOM05D005007 ORTHO05D006053 1.4e-06 56.2 55 47.3
Sabra11G0096200 Salix brachista HOM05D005007 ORTHO05D006053 1.4e-06 56.2 46 63.0
Eucgr.D00467 Eucalyptus grandis HOM05D005007 ORTHO05D006053 3.0e-06 55.1 60 50.0
PGSC0003DMG400044408 Solanum tuberosum HOM05D005007 ORTHO05D006053 6.8e-06 53.9 46 58.7


User provided reference genes

Program Settings