Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy4G00224 Aquilegia oxysepala HOM05D005059 ORTHO05D004248 5.4e-47 190.7 97 100.0
TAR624G0872 Trochodendron aralioides HOM05D005059 ORTHO05D004248 4.0e-26 121.3 91 64.8
TAR626G0600 Trochodendron aralioides HOM05D005059 ORTHO05D004248 9.0e-26 120.2 97 64.9
TAR627G0439 Trochodendron aralioides HOM05D005059 ORTHO05D004248 8.4e-24 113.6 92 64.1
Nn6g34461 Nelumbo nucifera HOM05D005059 ORTHO05D004248 4.6e-22 107.8 88 59.1
TAR624G0770 Trochodendron aralioides HOM05D005059 ORTHO05D004248 6.0e-22 107.5 87 59.8
Nn3g21078 Nelumbo nucifera HOM05D005059 ORTHO05D004248 1.9e-20 102.4 97 57.7
Dinv18371 Davidia involucrata HOM05D000126 ORTHO05D000085 1.6e-19 99.4 91 54.9
MBI06_g16696_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 6.2e-19 97.4 97 56.7
Thecc.06G165400 Theobroma cacao HOM05D005059 ORTHO05D004248 1.4e-18 96.3 97 56.7
Haze_06169 Corylus avellana HOM05D005059 ORTHO05D004248 2.4e-18 95.5 97 52.6
COL.COLO4_31233 Corchorus olitorius HOM05D005059 ORTHO05D004248 1.5e-17 92.8 100 52.0
Hma1.2p1_1016F.1_g248040 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 1.5e-17 92.8 93 54.8
TAR627G0061 Trochodendron aralioides HOM05D005059 ORTHO05D004248 2.0e-17 92.4 82 58.5
CiPaw.09G073100 Carya illinoinensis HOM05D005059 ORTHO05D004248 1.0e-16 90.1 85 52.9
Gohir.A05G153400 Gossypium hirsutum HOM05D005059 ORTHO05D004248 1.0e-16 90.1 98 54.1
Hma1.2p1_0113F.1_g055120 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 1.7e-16 89.4 91 58.2
Cfa000656 Carpinus fangiana HOM05D005059 ORTHO05D004248 3.8e-16 88.2 99 50.5
Ciclev10018148m.g Citrus clementina HOM05D005059 ORTHO05D004248 4.9e-16 87.8 93 53.8
Gohir.D05G156000 Gossypium hirsutum HOM05D005059 ORTHO05D004248 4.9e-16 87.8 98 53.1
Gorai.009G160500 Gossypium raimondii HOM05D005059 ORTHO05D004248 4.9e-16 87.8 98 53.1
CAN.G411.50 Capsicum annuum HOM05D005059 ORTHO05D004248 8.4e-16 87.0 94 53.2
Dinv15004 Davidia involucrata HOM05D005059 ORTHO05D004248 1.9e-15 85.9 85 58.8
MSTRG.13233 Avicennia marina HOM05D005059 ORTHO05D004248 4.2e-15 84.7 79 55.7
Glyma.05G161100 Glycine max HOM05D005059 ORTHO05D004248 7.1e-15 84.0 98 52.0
Glyma.08G118500 Glycine max HOM05D005059 ORTHO05D004248 1.2e-14 83.2 98 52.0
Oeu060173.1 Olea europaea HOM05D005059 ORTHO05D004248 1.2e-14 83.2 88 47.7
Sopen02g021130 Solanum pennellii HOM05D005059 ORTHO05D004248 1.2e-14 83.2 87 54.0
TAR629G2882 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.2e-14 83.2 81 48.1
Cc02_g15600 Coffea canephora HOM05D005059 ORTHO05D004248 2.1e-14 82.4 100 49.0
DCAR_005145 Daucus carota HOM05D005059 ORTHO05D004248 2.7e-14 82.0 101 48.5
Phvul.002G241108 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 2.7e-14 82.0 99 51.5
QL05p049931 Quercus lobata HOM05D005059 ORTHO05D004248 3.5e-14 81.6 89 52.8
Gorai.010G161500 Gossypium raimondii HOM05D005059 ORTHO05D004248 6.0e-14 80.9 99 50.5
Oeu043118.1 Olea europaea HOM05D005059 ORTHO05D004248 7.9e-14 80.5 97 46.4
Potri.004G061300 Populus trichocarpa HOM05D005059 ORTHO05D004248 7.9e-14 80.5 98 48.0
PGSC0003DMG400028485 Solanum tuberosum HOM05D005059 ORTHO05D004248 1.0e-13 80.1 90 55.6
SalBow7G3765 Salvia bowleyana HOM05D005059 ORTHO05D004248 1.3e-13 79.7 88 46.6
FvH4_3g07300 Fragaria vesca HOM05D005059 ORTHO05D004248 1.8e-13 79.3 92 47.8
Manes.16G042800 Manihot esculenta HOM05D005059 ORTHO05D004248 1.8e-13 79.3 94 46.8
MBI07_g00460_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 2.3e-13 79.0 56 66.1
Dinv12752 Davidia involucrata HOM05D005059 ORTHO05D004248 3.0e-13 78.6 55 67.3
FAN11G2282 Fragaria x ananassa HOM05D005059 ORTHO05D004248 3.0e-13 78.6 92 47.8
CSS0038855 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 3.9e-13 78.2 97 42.3
Oeu040922.1 Olea europaea HOM05D005059 ORTHO05D004248 3.9e-13 78.2 97 43.3
PGR042G3020 Punica granatum HOM05D005059 ORTHO05D004248 3.9e-13 78.2 101 46.5
RcHm_v2.0_Chr5g0011661 Rosa chinensis HOM05D005059 ORTHO05D004248 3.9e-13 78.2 101 46.5
TWI53G1149 Tripterygium wilfordii HOM05D005059 ORTHO05D004248 3.9e-13 78.2 91 53.8
FAN21G0043 Fragaria x ananassa HOM05D005059 ORTHO05D004248 5.1e-13 77.8 92 47.8
CSS0004272 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 6.7e-13 77.4 87 47.1
FAN16G0464 Fragaria x ananassa HOM05D005059 ORTHO05D004248 6.7e-13 77.4 92 47.8
CiPaw.10G061800 Carya illinoinensis HOM05D005059 ORTHO05D004248 8.7e-13 77.0 94 43.6
FAN25G1124 Fragaria x ananassa HOM05D005059 ORTHO05D004248 8.7e-13 77.0 92 47.8
Lsat_1_v5_gn_7_25601 Lactuca sativa HOM05D005059 ORTHO05D004248 8.7e-13 77.0 97 48.5
Oeu060178.1 Olea europaea HOM05D005059 ORTHO05D004248 8.7e-13 77.0 87 43.7
Oeu061362.1 Olea europaea HOM05D005059 ORTHO05D004248 8.7e-13 77.0 88 43.2
Rhsim13G0187800 Rhododendron simsii HOM05D005059 ORTHO05D004248 8.7e-13 77.0 98 45.9
Gohir.D06G138900 Gossypium hirsutum HOM05D005059 ORTHO05D004248 1.1e-12 76.6 99 48.5
Manes.17G059300 Manihot esculenta HOM05D005059 ORTHO05D004248 1.5e-12 76.3 94 46.8
Potri.011G070500 Populus trichocarpa HOM05D005059 ORTHO05D004248 1.5e-12 76.3 106 47.2
Atru.chr10.1568 Acer truncatum HOM05D005059 ORTHO05D004248 1.9e-12 75.9 92 50.0
Dinv32337 Davidia involucrata HOM05D005059 ORTHO05D004248 1.9e-12 75.9 71 54.9
Sabra04G0040600 Salix brachista HOM05D005059 ORTHO05D004248 1.9e-12 75.9 96 44.8
Nitab4.5_0000788g0070 Nicotiana tabacum HOM05D005059 ORTHO05D004248 3.3e-12 75.1 97 42.3
DCAR_027980 Daucus carota HOM05D005059 ORTHO05D004248 5.7e-12 74.3 94 45.7
Rhsim04G0027000 Rhododendron simsii HOM05D002453 ORTHO05D008746 7.4e-12 73.9 79 46.8
Prupe.4G067000 Prunus persica HOM05D005059 ORTHO05D004248 9.7e-12 73.6 90 45.6
Migut.H01411 Erythranthe guttata HOM05D005059 ORTHO05D004248 1.3e-11 73.2 90 41.1
Gohir.A06G133800 Gossypium hirsutum HOM05D005059 ORTHO05D004248 1.3e-11 73.2 99 47.5
Glyma.13G226600 Glycine max HOM05D005059 ORTHO05D004248 2.2e-11 72.4 90 48.9
MD10G1275500 Malus domestica HOM05D005059 ORTHO05D004248 2.2e-11 72.4 93 46.2
DCAR_027979 Daucus carota HOM05D005059 ORTHO05D004248 2.8e-11 72.0 53 62.3
MD00G1009200 Malus domestica HOM05D005059 ORTHO05D004248 4.8e-11 71.2 92 47.8
MD00G1221100 Malus domestica HOM05D005059 ORTHO05D004248 4.8e-11 71.2 92 47.8
BcaB07g32517 Brassica carinata HOM05D005059 ORTHO05D004248 6.3e-11 70.9 97 43.3
Eucgr.D00466 Eucalyptus grandis HOM05D005059 ORTHO05D004248 8.2e-11 70.5 99 45.5
Phvul.006G173000 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 8.2e-11 70.5 91 45.1
SalBow8G0022 Salvia bowleyana HOM05D005059 ORTHO05D004248 8.2e-11 70.5 59 55.9
Ca_00473_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 1.1e-10 70.1 89 50.6
Medtr2g016800 Medicago truncatula HOM05D005059 ORTHO05D004248 1.1e-10 70.1 94 43.6
AL1G43080 Arabidopsis lyrata HOM05D005059 ORTHO05D004248 1.4e-10 69.7 105 41.0
Lj4g0014521 Lotus japonicus HOM05D005059 ORTHO05D004248 2.4e-10 68.9 92 45.7
Medtr8g087390 Medicago truncatula HOM05D005059 ORTHO05D004248 2.4e-10 68.9 95 44.2
Thecc.07G128100 Theobroma cacao HOM05D008890 ORTHO05D004248 2.4e-10 68.9 97 46.4
Aa31LG6G6240 Aethionema arabicum HOM05D005059 ORTHO05D004248 3.1e-10 68.6 109 43.1
AT1G29290 Arabidopsis thaliana HOM05D005059 ORTHO05D004248 3.1e-10 68.6 105 41.0
Duzib213G0473 Durio zibethinus HOM05D008890 ORTHO05D004248 3.1e-10 68.6 90 46.7
THA.LOC104820608 Tarenaya hassleriana HOM05D005059 ORTHO05D004248 3.1e-10 68.6 63 58.7
Thecc.07G128300 Theobroma cacao HOM05D008890 ORTHO05D004248 3.1e-10 68.6 91 40.7
Thecc.07G128200 Theobroma cacao HOM05D008890 ORTHO05D004248 4.1e-10 68.2 97 43.3
MSTRG.7430 Avicennia marina HOM05D005059 ORTHO05D004248 5.3e-10 67.8 98 42.9
Psat7g068640 Pisum sativum HOM05D005059 ORTHO05D004248 5.3e-10 67.8 98 38.8
Sabra11G0055200 Salix brachista HOM05D005059 ORTHO05D004248 5.3e-10 67.8 103 42.7
Actinidia18806 Actinidia chinensis HOM05D005059 ORTHO05D004248 6.9e-10 67.4 81 46.9
CSS0027903 Camellia sinensis var. sinensis HOM05D008890 ORTHO05D004248 9.0e-10 67.0 90 50.0
CARHR028610 Cardamine hirsuta HOM05D005059 ORTHO05D004248 9.0e-10 67.0 100 40.0
Manes.03G100250 Manihot esculenta HOM05D008890 ORTHO05D004248 1.2e-09 66.6 98 43.9
Nitab4.5_0006663g0010 Nicotiana tabacum HOM05D005059 ORTHO05D004248 1.2e-09 66.6 92 42.4
A09p37060 Brassica napus HOM05D005059 ORTHO05D004248 1.5e-09 66.2 97 38.1
BraA09t39221Z Brassica rapa HOM05D005059 ORTHO05D004248 1.5e-09 66.2 97 38.1
Lsat_1_v5_gn_7_102441 Lactuca sativa HOM05D005059 ORTHO05D004248 1.5e-09 66.2 91 44.0
TPR.G6728 Trifolium pratense HOM05D005059 ORTHO05D004248 2.6e-09 65.5 93 45.2
BcaC05g26955 Brassica carinata HOM05D005059 ORTHO05D004248 3.4e-09 65.1 97 38.1
C05p28050 Brassica napus HOM05D005059 ORTHO05D004248 3.4e-09 65.1 97 38.1
BolC5t31533H Brassica oleracea HOM05D005059 ORTHO05D004248 3.4e-09 65.1 97 38.1
PSO339G2616 Papaver somniferum HOM05D005059 ORTHO05D004248 3.4e-09 65.1 97 40.2
arahy.Tifrunner.gnm1.ann1.YNVN02 Arachis hypogaea HOM05D005059 ORTHO05D004248 4.5e-09 64.7 94 46.8
BcaB03g12151 Brassica carinata HOM05D005059 ORTHO05D004248 5.9e-09 64.3 99 36.4
arahy.Tifrunner.gnm1.ann1.YXRF57 Arachis hypogaea HOM05D005059 ORTHO05D004248 7.6e-09 63.9 96 44.8
CDE02G4707 Ceratophyllum demersum HOM05D001096 ORTHO05D001629 7.6e-09 63.9 81 43.2
Duzib213G0742 Durio zibethinus HOM05D008890 ORTHO05D004248 7.6e-09 63.9 93 44.1
BcaB03g13892 Brassica carinata HOM05D005059 ORTHO05D004248 1.0e-08 63.5 99 39.4
Thhalv10009585m.g Eutrema salsugineum HOM05D005059 ORTHO05D004248 1.3e-08 63.2 108 38.9
Rhsim13G0187700 Rhododendron simsii HOM05D005059 ORTHO05D004248 1.3e-08 63.2 98 46.9
AUR62039479 Chenopodium quinoa HOM05D005059 ORTHO05D004248 2.2e-08 62.4 67 53.7
Lj6g0009726 Lotus japonicus HOM05D005059 ORTHO05D004248 2.2e-08 62.4 97 49.5
A07p10740 Brassica napus HOM05D005059 ORTHO05D004248 3.8e-08 61.6 99 39.4
BraA07t28869Z Brassica rapa HOM05D005059 ORTHO05D004248 3.8e-08 61.6 99 39.4
Gohir.A01G049200 Gossypium hirsutum HOM05D008890 ORTHO05D004248 6.5e-08 60.8 102 44.1
Lsat_1_v5_gn_7_102321 Lactuca sativa HOM05D005059 ORTHO05D004248 6.5e-08 60.8 93 41.9
QL08p025461 Quercus lobata HOM05D008890 ORTHO05D004248 6.5e-08 60.8 92 39.1
Atru.chr2.2076 Acer truncatum HOM05D022481 ORTHO05D023186 8.5e-08 60.5 90 40.0
Atru.chr2.2092 Acer truncatum HOM05D022481 ORTHO05D023186 8.5e-08 60.5 89 41.6
Sp1g25220 Schrenkiella parvula HOM05D005059 ORTHO05D004248 8.5e-08 60.5 96 37.5
EL10Ac4g08366 Beta vulgaris HOM05D005059 ORTHO05D004248 1.1e-07 60.1 58 56.9
COL.COLO4_17491 Corchorus olitorius HOM05D008890 ORTHO05D004248 1.1e-07 60.1 97 40.2
Glyma.15G085800 Glycine max HOM05D005059 ORTHO05D004248 1.4e-07 59.7 89 43.8
Gohir.D01G040200 Gossypium hirsutum HOM05D008890 ORTHO05D004248 1.4e-07 59.7 92 42.4
Lsat_1_v5_gn_7_102341 Lactuca sativa HOM05D005059 ORTHO05D004248 1.4e-07 59.7 91 40.7
BcaC06g35423 Brassica carinata HOM05D005059 ORTHO05D004248 1.9e-07 59.3 100 39.0
C07p16340 Brassica napus HOM05D005059 ORTHO05D004248 1.9e-07 59.3 100 39.0
BolC7t42128H Brassica oleracea HOM05D005059 ORTHO05D004248 1.9e-07 59.3 100 39.0
Ca_17896_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 1.9e-07 59.3 89 37.1
Psat1g194640 Pisum sativum HOM05D005059 ORTHO05D004248 1.9e-07 59.3 95 44.2
DCAR_013163 Daucus carota HOM05D005059 ORTHO05D004248 3.2e-07 58.5 99 38.4
Thhalv10009335m.g Eutrema salsugineum HOM05D009829 ORTHO05D012418 3.2e-07 58.5 103 39.8
Gorai.002G049800 Gossypium raimondii HOM05D008890 ORTHO05D004248 3.2e-07 58.5 94 42.6
Actinidia12585 Actinidia chinensis HOM05D005059 ORTHO05D004248 5.5e-07 57.8 80 46.2
Carub.0001s2751 Capsella rubella HOM05D005059 ORTHO05D004248 5.5e-07 57.8 104 34.6
Gohir.A01G049400 Gossypium hirsutum HOM05D008890 ORTHO05D004248 5.5e-07 57.8 97 38.1
Gohir.A01G049500 Gossypium hirsutum HOM05D008890 ORTHO05D004248 5.5e-07 57.8 94 41.5
Gohir.D01G040100 Gossypium hirsutum HOM05D008890 ORTHO05D004248 5.5e-07 57.8 94 41.5
Gorai.002G049700 Gossypium raimondii HOM05D008890 ORTHO05D004248 5.5e-07 57.8 94 41.5
Hma1.2p1_0373F.1_g138420 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 5.5e-07 57.8 62 56.5
SGA_v2.0_scaffold1G00085 Striga asiatica HOM05D005059 ORTHO05D004248 5.5e-07 57.8 53 50.9
Gohir.D01G040000 Gossypium hirsutum HOM05D008890 ORTHO05D004248 7.2e-07 57.4 97 39.2
Gorai.002G049600 Gossypium raimondii HOM05D008890 ORTHO05D004248 7.2e-07 57.4 97 39.2
Ah.14g086980 Amaranthus hybridus HOM05D005059 ORTHO05D004248 9.3e-07 57.0 61 57.4
BcaC01g00093 Brassica carinata HOM05D005059 ORTHO05D004248 9.3e-07 57.0 97 35.1
A08p25180 Brassica napus HOM05D005059 ORTHO05D004248 9.3e-07 57.0 97 35.1
C03p75700 Brassica napus HOM05D005059 ORTHO05D004248 9.3e-07 57.0 97 35.1
BolC3t19830H Brassica oleracea HOM05D005059 ORTHO05D004248 9.3e-07 57.0 97 35.1
BraA08t34472Z Brassica rapa HOM05D005059 ORTHO05D004248 9.3e-07 57.0 97 35.1
Gohir.A01G050000 Gossypium hirsutum HOM05D008890 ORTHO05D004248 1.2e-06 56.6 94 43.6
Gorai.002G049900 Gossypium raimondii HOM05D008890 ORTHO05D004248 1.2e-06 56.6 91 40.7
Lalb_Chr15g0086331 Lupinus albus HOM05D005059 ORTHO05D004248 1.6e-06 56.2 94 41.5
Atru.chr2.2085 Acer truncatum HOM05D022481 ORTHO05D023186 2.1e-06 55.8 89 39.3
Potri.011G108101 Populus trichocarpa HOM05D008890 ORTHO05D004248 2.1e-06 55.8 91 36.3
Thecc.07G128000 Theobroma cacao HOM05D008890 ORTHO05D004248 2.1e-06 55.8 90 38.9
Cpa.g.sc77.31 Carica papaya HOM05D067836 ORTHO05D043529 2.7e-06 55.5 88 42.0
AUR62037560 Chenopodium quinoa HOM05D005059 ORTHO05D004248 2.7e-06 55.5 83 39.8
Migut.M01008 Erythranthe guttata HOM05D005059 ORTHO05D004248 2.7e-06 55.5 93 37.6
Gohir.A01G049700 Gossypium hirsutum HOM05D008890 ORTHO05D004248 2.7e-06 55.5 91 41.8
Aqoxy1G01972 Aquilegia oxysepala HOM05D005059 ORTHO05D078324 4.6e-06 54.7 48 56.2
AUR62019592 Chenopodium quinoa HOM05D005059 ORTHO05D004248 4.6e-06 54.7 83 43.4
Gohir.A01G049600 Gossypium hirsutum HOM05D008890 ORTHO05D004248 4.6e-06 54.7 91 40.7
TPR.G4530 Trifolium pratense HOM05D005059 ORTHO05D004248 6.1e-06 54.3 53 54.7


User provided reference genes

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