Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy46s002 Aquilegia oxysepala HOM05D004612 ORTHO05D004940 6.2e-183 644.0 336 100.0
TAR629G0951 Trochodendron aralioides HOM05D004612 ORTHO05D004940 4.4e-120 435.3 337 67.7
GSVIVG01026844001 Vitis vinifera HOM05D004612 ORTHO05D004940 1.8e-110 403.3 338 65.7
Actinidia09998 Actinidia chinensis HOM05D004612 ORTHO05D004940 2.4e-110 402.9 333 65.8
Nn3g17842 Nelumbo nucifera HOM05D004612 ORTHO05D004940 2.4e-110 402.9 340 65.3
QL08p049561 Quercus lobata HOM05D004612 ORTHO05D004940 4.1e-110 402.1 335 64.2
Haze_15464 Corylus avellana HOM05D004612 ORTHO05D004940 6.6e-108 394.8 335 64.5
Cfa003958 Carpinus fangiana HOM05D004612 ORTHO05D004940 4.7e-106 388.7 335 63.0
Rhsim07G0018100 Rhododendron simsii HOM05D004612 ORTHO05D004940 1.4e-105 387.1 337 62.0
Hma1.2p1_0033F.1_g020400 Hydrangea macrophylla HOM05D004612 ORTHO05D004940 1.8e-105 386.7 333 63.7
CSS0046042 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 3.0e-105 386.0 335 63.0
CsaV3_3G009110 Cucumis sativus L. HOM05D004612 ORTHO05D004940 3.0e-105 386.0 335 64.5
CSS0014629 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 4.0e-105 385.6 335 62.7
MBI17_g08173_MAGBIO Magnolia biondii HOM05D004612 ORTHO05D004940 6.8e-105 384.8 342 60.8
CSS0006325 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 2.0e-104 383.3 335 62.4
COL.COLO4_12673 Corchorus olitorius HOM05D004612 ORTHO05D004940 2.0e-104 383.3 331 63.1
PSO063G2700 Papaver somniferum HOM05D004612 ORTHO05D004940 4.4e-104 382.1 337 61.7
Ca_27541_v3 Cicer arietinum L. HOM05D004612 ORTHO05D004940 7.5e-104 381.3 332 61.4
Dinv32447 Davidia involucrata HOM05D004612 ORTHO05D004940 7.5e-104 381.3 313 66.1
Sed0015875 Sechium edule HOM05D004612 ORTHO05D004940 1.3e-103 380.6 335 63.3
MD07G1141600 Malus domestica HOM05D004612 ORTHO05D004940 2.2e-103 379.8 335 62.4
MELO3C006131.2 Cucumis melo HOM05D004612 ORTHO05D004940 3.7e-103 379.0 340 63.2
RcHm_v2.0_Chr1g0353691 Rosa chinensis HOM05D004612 ORTHO05D004940 4.9e-103 378.6 338 61.5
Cc02_g37600 Coffea canephora HOM05D004612 ORTHO05D004940 6.3e-103 378.3 332 63.6
Ciclev10024326m.g Citrus clementina HOM05D004612 ORTHO05D004940 4.1e-102 375.6 333 60.7
arahy.Tifrunner.gnm1.ann1.4I97V1 Arachis hypogaea HOM05D004612 ORTHO05D004940 5.4e-102 375.2 331 60.7
Lalb_Chr10g0097231 Lupinus albus HOM05D004612 ORTHO05D004940 9.2e-102 374.4 332 60.5
PSO782G5368 Papaver somniferum HOM05D004612 ORTHO05D004940 9.2e-102 374.4 339 62.2
Solyc05g048770.3 Solanum lycopersicum HOM05D004612 ORTHO05D004940 9.2e-102 374.4 330 60.6
Sopen05g028090 Solanum pennellii HOM05D004612 ORTHO05D004940 2.0e-101 373.2 330 61.2
CiPaw.02G028400 Carya illinoinensis HOM05D004612 ORTHO05D004940 3.5e-101 372.5 307 65.8
DCAR_008600 Daucus carota HOM05D004612 ORTHO05D004940 4.5e-101 372.1 334 60.8
Manes.12G065000 Manihot esculenta HOM05D004612 ORTHO05D004940 5.9e-101 371.7 332 62.0
Glyma.03G096900 Glycine max HOM05D004612 ORTHO05D004940 1.3e-100 370.5 332 59.9
FvH4_7g13631 Fragaria vesca HOM05D004612 ORTHO05D004940 2.3e-100 369.8 332 61.4
FAN10G2510 Fragaria x ananassa HOM05D004612 ORTHO05D004940 3.9e-100 369.0 332 61.1
Medtr8g031580 Medicago truncatula HOM05D004612 ORTHO05D004940 3.9e-100 369.0 332 61.1
Psat4g153800 Pisum sativum HOM05D004612 ORTHO05D004940 3.9e-100 369.0 332 60.8
Thecc.01G363500 Theobroma cacao HOM05D004612 ORTHO05D004940 3.9e-100 369.0 339 60.8
Nitab4.5_0002608g0040 Nicotiana tabacum HOM05D004612 ORTHO05D004940 5.0e-100 368.6 334 59.3
Prupe.2G162500 Prunus persica HOM05D004612 ORTHO05D004940 5.0e-100 368.6 324 63.9
FAN06G2470 Fragaria x ananassa HOM05D004612 ORTHO05D004940 6.6e-100 368.2 332 61.4
ClCG05G001720 Citrullus lanatus HOM05D004612 ORTHO05D004940 8.6e-100 367.9 356 59.3
PGR031G1383 Punica granatum HOM05D004612 ORTHO05D004940 2.5e-99 366.3 331 61.3
FAN06G3441 Fragaria x ananassa HOM05D004612 ORTHO05D004940 7.3e-99 364.8 332 61.1
Eucgr.D02267 Eucalyptus grandis HOM05D004612 ORTHO05D004940 1.2e-98 364.0 334 59.9
Lj3g0020312 Lotus japonicus HOM05D004612 ORTHO05D004940 3.6e-98 362.5 332 59.6
TPR.G4369 Trifolium pratense HOM05D004612 ORTHO05D004940 3.6e-98 362.5 340 60.0
Nitab4.5_0010827g0010 Nicotiana tabacum HOM05D004612 ORTHO05D004940 8.0e-98 361.3 334 58.1
Sc07g0008070 Simmondsia chinensis HOM05D004612 ORTHO05D004940 1.4e-97 360.5 335 57.6
CAN.G718.1 Capsicum annuum HOM05D004612 ORTHO05D004940 2.3e-97 359.8 330 59.4
Gorai.007G097300 Gossypium raimondii HOM05D004612 ORTHO05D004940 3.1e-97 359.4 332 60.5
Potri.014G080600 Populus trichocarpa HOM05D004612 ORTHO05D004940 3.1e-97 359.4 332 60.5
Gohir.A11G082600 Gossypium hirsutum HOM05D004612 ORTHO05D004940 6.8e-97 358.2 331 59.5
Carub.0006s3663 Capsella rubella HOM05D004612 ORTHO05D004940 2.6e-96 356.3 332 56.9
Cpa.g.sc20.34 Carica papaya HOM05D004612 ORTHO05D004940 2.6e-96 356.3 331 57.4
TWI59G0622 Tripterygium wilfordii HOM05D004612 ORTHO05D004940 3.4e-96 355.9 332 61.1
Sabra14G0058500 Salix brachista HOM05D004612 ORTHO05D004940 2.2e-95 353.2 342 57.9
ATR0680G383 Amborella trichopoda HOM05D004612 ORTHO05D004940 2.9e-95 352.8 341 56.9
Phvul.011G160800 Phaseolus vulgaris HOM05D004612 ORTHO05D004940 3.7e-95 352.4 320 58.1
Thhalv10028700m.g Eutrema salsugineum HOM05D004612 ORTHO05D004940 8.3e-95 351.3 332 57.2
AL6G52840 Arabidopsis lyrata HOM05D004612 ORTHO05D004940 1.1e-94 350.9 332 56.9
C09p00500 Brassica napus HOM05D004612 ORTHO05D004940 1.9e-94 350.1 332 56.6
BraA09t35721Z Brassica rapa HOM05D004612 ORTHO05D004940 1.9e-94 350.1 332 57.5
Migut.B01722 Erythranthe guttata HOM05D004612 ORTHO05D004940 4.1e-94 349.0 328 58.5
FAN03G2220 Fragaria x ananassa HOM05D004612 ORTHO05D004940 2.7e-93 346.3 376 53.7
ECA234G1569 Erigeron canadensis HOM05D004612 ORTHO05D004940 1.3e-92 344.0 333 58.6
BcaB01g02261 Brassica carinata HOM05D004612 ORTHO05D004940 3.0e-92 342.8 332 56.6
SalBow3G1907 Salvia bowleyana HOM05D004612 ORTHO05D004940 6.6e-92 341.7 345 55.4
BolC9t52984H Brassica oleracea HOM05D004612 ORTHO05D004940 1.1e-91 340.9 345 54.2
MSTRG.17249 Avicennia marina HOM05D004612 ORTHO05D004940 1.5e-91 340.5 329 56.8
THA.LOC104801450 Tarenaya hassleriana HOM05D004612 ORTHO05D004940 1.9e-91 340.1 332 56.3
Duzib133G0359 Durio zibethinus HOM05D004612 ORTHO05D004940 5.6e-91 338.6 337 58.8
A09p00400 Brassica napus HOM05D004612 ORTHO05D004940 1.2e-90 337.4 333 55.9
Lj9C580G6 Lonicera japonica HOM05D004612 ORTHO05D004940 6.2e-90 335.1 308 61.4
BcaC04g24158 Brassica carinata HOM05D004612 ORTHO05D004940 1.8e-89 333.6 332 55.4
Aa31LG5G400 Aethionema arabicum HOM05D004612 ORTHO05D004940 2.6e-88 329.7 342 52.6
HanXRQChr16g0523031 Helianthus annuus HOM05D004612 ORTHO05D004940 4.4e-88 328.9 332 57.2
Os04g0682500 Oryza sativa ssp. japonica HOM05D004612 ORTHO05D004940 4.4e-88 328.9 329 56.2
AUR62033332 Chenopodium quinoa HOM05D004612 ORTHO05D004940 1.7e-87 327.0 337 53.4
MD01G1053600 Malus domestica HOM05D004612 ORTHO05D004940 1.7e-87 327.0 334 55.4
BcaB01g02263 Brassica carinata HOM05D004612 ORTHO05D004940 1.4e-86 323.9 332 56.0
EL10Ac1g00526 Beta vulgaris HOM05D004612 ORTHO05D004940 3.2e-86 322.8 311 59.2
AUR62004317 Chenopodium quinoa HOM05D004612 ORTHO05D004940 2.7e-85 319.7 315 55.2
Gohir.D11G091300 Gossypium hirsutum HOM05D004612 ORTHO05D004940 7.8e-85 318.2 289 60.9
Lsat_1_v5_gn_4_36480 Lactuca sativa HOM05D004612 ORTHO05D004940 1.0e-84 317.8 325 58.5
Peaxi162Scf00397g00041 Petunia axillaris HOM05D004612 ORTHO05D004940 8.6e-84 314.7 295 57.3
vmacro13313 Vaccinium macrocarpon HOM05D004612 ORTHO05D004940 5.6e-83 312.0 342 54.4
CARHR248760 Cardamine hirsuta HOM05D004612 ORTHO05D004940 8.9e-81 304.7 318 53.1
HPP92_021103 Vanilla planifolia HOM05D004612 ORTHO05D004940 1.3e-79 300.8 327 52.9
AT4G00590 Arabidopsis thaliana HOM05D004612 ORTHO05D004940 3.2e-78 296.2 333 50.5
SGA_v2.0_scaffold95G28856 Striga asiatica HOM05D004612 ORTHO05D004940 6.6e-76 288.5 329 48.9
Zm00001eb433970 Zea mays HOM05D004612 ORTHO05D004940 2.5e-75 286.6 297 53.5
AUR62023440 Chenopodium quinoa HOM05D004612 ORTHO05D004940 4.7e-74 282.3 296 53.0
AUR62033327 Chenopodium quinoa HOM05D004612 ORTHO05D004940 4.7e-74 282.3 296 53.0
Nitab4.5_0010110g0020 Nicotiana tabacum HOM05D004612 ORTHO05D004940 6.2e-74 282.0 263 58.9
BcaNung05358 Brassica carinata HOM05D004612 ORTHO05D004940 6.4e-71 271.9 308 51.6
Atru.chr5.445 Acer truncatum HOM05D004612 ORTHO05D004940 8.4e-71 271.6 230 62.6
Sp6g00630 Schrenkiella parvula HOM05D004612 ORTHO05D004940 2.7e-69 266.5 287 51.2
Ah.05g176430 Amaranthus hybridus HOM05D004612 ORTHO05D004940 1.7e-68 263.8 350 48.3
TWI59G1187 Tripterygium wilfordii HOM05D004612 ORTHO05D004940 1.5e-67 260.8 293 50.9
FAN01G1921 Fragaria x ananassa HOM05D000092 ORTHO05D004940 7.3e-67 258.5 359 46.8
BcaNung07163 Brassica carinata HOM05D004612 ORTHO05D004940 3.6e-66 256.1 325 47.7
VMungo1127G0482 Vigna mungo HOM05D004612 ORTHO05D004940 1.4e-65 254.2 188 68.6
unitig_0.g1278 Utricularia gibba HOM05D004612 ORTHO05D004940 6.9e-65 251.9 329 47.7
Mapoly0068s0044 Marchantia polymorpha HOM05D004612 ORTHO05D004940 1.5e-64 250.8 317 46.7
Oeu014678.1 Olea europaea HOM05D004612 ORTHO05D004940 1.3e-63 247.7 347 45.8
Pp3c10_3850 Physcomitrium patens HOM05D004612 ORTHO05D004940 1.9e-62 243.8 320 46.9
AagrBONN_evm.TU.Sc2ySwM_344.1798 Anthoceros agrestis HOM05D004612 ORTHO05D004940 3.2e-62 243.0 340 42.9
CARHR288840 Cardamine hirsuta HOM05D004612 ORTHO05D004940 3.2e-62 243.0 317 46.7
CSS0003938 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 5.1e-60 235.7 318 48.4
Aqoxy5G04026 Aquilegia oxysepala HOM05D004612 ORTHO05D004940 4.3e-59 232.6 199 69.3
Prupe.8G034000 Prunus persica HOM05D004612 ORTHO05D004940 3.6e-58 229.6 165 73.3
CSS0040114 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 1.1e-57 228.0 347 45.0
Peaxi162Scf00246g01122 Petunia axillaris HOM05D004612 ORTHO05D004940 1.7e-55 220.7 167 67.1
SMO364G0809 Selaginella moellendorffii HOM05D004612 ORTHO05D004940 7.4e-51 205.3 313 41.5
Hund16942 Selenicereus undatus HOM05D004612 ORTHO05D004940 7.4e-51 205.3 331 41.4
PGSC0003DMG400021637 Solanum tuberosum HOM05D004612 ORTHO05D004940 2.8e-50 203.4 188 60.6
CSS0037024 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 7.1e-46 188.7 338 41.4
CDE05G3327 Ceratophyllum demersum HOM05D004612 ORTHO05D004940 6.0e-45 185.7 246 49.2
CSS0007536 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 5.3e-41 172.6 175 55.4
Gohir.D02G148550 Gossypium hirsutum HOM05D004612 ORTHO05D004940 4.5e-40 169.5 215 50.2
vmacro13422 Vaccinium macrocarpon HOM05D004612 ORTHO05D004940 5.8e-40 169.1 279 43.7
Gorai.005G166700 Gossypium raimondii HOM05D004612 ORTHO05D004940 2.7e-37 160.2 186 51.1
Gorai.005G189400 Gossypium raimondii HOM05D004612 ORTHO05D004940 1.1e-35 154.8 186 50.0
Oeu004526.1 Olea europaea HOM05D004612 ORTHO05D004940 1.6e-34 151.0 151 53.0
Gohir.D02G101800 Gossypium hirsutum HOM05D004612 ORTHO05D004940 6.9e-33 145.6 86 83.7
Gorai.005G115400 Gossypium raimondii HOM05D004612 ORTHO05D004940 3.8e-31 139.8 86 81.4
Gohir.D11G259000 Gossypium hirsutum HOM05D004612 ORTHO05D004940 1.4e-30 137.9 86 80.2
Gorai.007G277100 Gossypium raimondii HOM05D004612 ORTHO05D004940 3.6e-29 133.3 86 80.2
vmacro22088 Vaccinium macrocarpon HOM05D004612 ORTHO05D004940 6.1e-29 132.5 194 45.4
Haze_05813 Corylus avellana HOM05D000402 ORTHO05D004940 1.1e-27 128.3 92 67.4
VMungo1127G0842 Vigna mungo HOM05D004612 ORTHO05D004940 1.1e-25 121.7 117 53.8
vmacro13310 Vaccinium macrocarpon HOM05D004612 ORTHO05D004940 3.1e-25 120.2 145 51.7
SEGI_36589 Sequoiadendron giganteum HOM05D004612 ORTHO05D004940 5.0e-23 112.8 113 54.0
vmacro00164 Vaccinium macrocarpon HOM05D004612 ORTHO05D004940 9.4e-22 108.6 152 44.1
Gohir.D02G169000 Gossypium hirsutum HOM05D004612 ORTHO05D004940 1.6e-21 107.8 66 81.8
CBR_g30725 Chara braunii HOM05D004612 ORTHO05D004940 2.3e-20 104.0 238 33.6
Atru.chr5.446 Acer truncatum HOM05D004612 ORTHO05D004940 1.3e-18 98.2 85 61.2
CDE05G2136 Ceratophyllum demersum HOM05D004612 ORTHO05D004940 7.7e-16 89.0 102 49.0
Nitab4.5_0000094g0210 Nicotiana tabacum HOM05D004612 ORTHO05D004940 2.1e-13 80.9 123 40.7
SEGI_15231 Sequoiadendron giganteum HOM05D004612 ORTHO05D004940 8.0e-13 79.0 58 63.8
BraA09t39921Z Brassica rapa HOM05D000302 ORTHO05D001604 1.8e-12 77.8 52 69.2
vmacro13311 Vaccinium macrocarpon HOM05D004612 ORTHO05D004940 5.2e-12 76.3 85 51.8
Cc02_g28690 Coffea canephora HOM05D004612 ORTHO05D004940 1.7e-10 71.2 168 35.7
HPP92_021084 Vanilla planifolia HOM05D004612 ORTHO05D004940 3.7e-10 70.1 55 63.6
CSS0015544 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 6.3e-10 69.3 53 62.3
TAR628G0711 Trochodendron aralioides HOM05D002101 ORTHO05D002126 9.1e-09 65.5 223 27.4
Cfa018054 Carpinus fangiana HOM05D002101 ORTHO05D002126 3.5e-08 63.5 224 27.2
Haze_18075 Corylus avellana HOM05D002101 ORTHO05D002126 3.5e-08 63.5 224 27.2
Medtr3g102370 Medicago truncatula HOM05D002101 ORTHO05D002126 1.0e-07 62.0 223 25.6
CSS0039215 Camellia sinensis var. sinensis HOM05D002101 ORTHO05D002126 3.8e-07 60.1 224 25.9
PGR031G0753 Punica granatum HOM05D002101 ORTHO05D002126 3.8e-07 60.1 277 26.7
QL02p003868 Quercus lobata HOM05D002101 ORTHO05D002126 3.8e-07 60.1 224 25.0
unitig_26.g9334 Utricularia gibba HOM05D002101 ORTHO05D002126 3.8e-07 60.1 223 27.4
arahy.Tifrunner.gnm1.ann1.FF7FBD Arachis hypogaea HOM05D002101 ORTHO05D002126 5.0e-07 59.7 223 26.0
CiPaw.15G051700 Carya illinoinensis HOM05D002101 ORTHO05D002126 5.0e-07 59.7 224 25.4
arahy.Tifrunner.gnm1.ann1.F85LVX Arachis hypogaea HOM05D002101 ORTHO05D002126 1.1e-06 58.5 223 25.6
Nitab4.5_0000412g0050 Nicotiana tabacum HOM05D002101 ORTHO05D002126 1.1e-06 58.5 236 24.6
SGA_v2.0_scaffold28G11791 Striga asiatica HOM05D002101 ORTHO05D002126 1.5e-06 58.2 224 26.8
Ca_15931_v3 Cicer arietinum L. HOM05D002101 ORTHO05D002126 1.9e-06 57.8 224 24.6
Lalb_Chr22g0354871 Lupinus albus HOM05D002101 ORTHO05D002126 1.9e-06 57.8 225 26.7
Potri.014G022900 Populus trichocarpa HOM05D002101 ORTHO05D002126 1.9e-06 57.8 225 25.8
CiPaw.16G037500 Carya illinoinensis HOM05D002101 ORTHO05D002126 2.5e-06 57.4 224 25.4
MD15G1077000 Malus domestica HOM05D002101 ORTHO05D002126 2.5e-06 57.4 224 25.0
Atru.chr13.753 Acer truncatum HOM05D002101 ORTHO05D002126 3.2e-06 57.0 228 25.4
Sc02g0007560 Simmondsia chinensis HOM05D002101 ORTHO05D002126 3.2e-06 57.0 225 24.4
unitig_22.g6767 Utricularia gibba HOM05D002101 ORTHO05D002126 3.2e-06 57.0 225 26.7
Cfa025531 Carpinus fangiana HOM05D004612 ORTHO05D004940 4.2e-06 56.6 81 42.0
Cc10_g04900 Coffea canephora HOM05D002101 ORTHO05D002126 4.2e-06 56.6 225 25.8
MD08G1092600 Malus domestica HOM05D002101 ORTHO05D002126 4.2e-06 56.6 224 25.0
Nitab4.5_0001984g0010 Nicotiana tabacum HOM05D002101 ORTHO05D002126 5.5e-06 56.2 225 24.9
Prupe.1G430400 Prunus persica HOM05D002101 ORTHO05D002126 5.5e-06 56.2 224 26.3
TWI56G0762 Tripterygium wilfordii HOM05D002101 ORTHO05D002126 5.5e-06 56.2 224 25.4
Lj4C64T5 Lonicera japonica HOM05D002101 ORTHO05D002126 7.2e-06 55.8 235 24.7
Manes.05G177500 Manihot esculenta HOM05D002101 ORTHO05D002126 7.2e-06 55.8 228 26.3
PGSC0003DMG400008000 Solanum tuberosum HOM05D002101 ORTHO05D002126 7.2e-06 55.8 236 25.0
AUR62041664 Chenopodium quinoa HOM05D002101 ORTHO05D002126 9.4e-06 55.5 226 24.3
FAN20G1165 Fragaria x ananassa HOM05D002101 ORTHO05D002126 9.4e-06 55.5 224 25.4
Lj5g0007007 Lotus japonicus HOM05D002101 ORTHO05D002126 9.4e-06 55.5 223 26.9
SalBow6G5879 Salvia bowleyana HOM05D002101 ORTHO05D002126 9.4e-06 55.5 266 25.9


User provided reference genes

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