Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G04281 Aquilegia oxysepala HOM05D004911 ORTHO05D005930 0.0e+00 2213.3 1126 100.0
PSO063G3537 Papaver somniferum HOM05D004911 ORTHO05D005930 0.0e+00 1517.7 1135 67.9
PSO782G1502 Papaver somniferum HOM05D004911 ORTHO05D005930 0.0e+00 1513.8 1137 67.8
Nn3g18681 Nelumbo nucifera HOM05D004911 ORTHO05D005930 0.0e+00 1510.4 1139 69.4
GSVIVG01010210001 Vitis vinifera HOM05D004911 ORTHO05D005930 0.0e+00 1496.5 1132 68.1
Dinv12051 Davidia involucrata HOM05D004911 ORTHO05D005930 0.0e+00 1433.7 1133 65.7
MBI03_g33919_MAGBIO Magnolia biondii HOM05D004911 ORTHO05D005930 0.0e+00 1407.5 1138 65.3
CSS0020868 Camellia sinensis var. sinensis HOM05D004911 ORTHO05D005930 0.0e+00 1364.4 1137 63.1
Potri.008G085300 Populus trichocarpa HOM05D004911 ORTHO05D005930 0.0e+00 1355.1 1136 63.2
CANSAT56G0121 Cannabis sativa HOM05D004911 ORTHO05D005930 0.0e+00 1354.0 1135 62.9
Sabra08G0063200 Salix brachista HOM05D004911 ORTHO05D005930 0.0e+00 1348.6 1150 61.9
Thecc.02G295700 Theobroma cacao HOM05D004911 ORTHO05D005930 0.0e+00 1345.5 1131 61.5
Manes.03G080800 Manihot esculenta HOM05D004911 ORTHO05D005930 0.0e+00 1344.7 1134 62.7
TWI53G1120 Tripterygium wilfordii HOM05D004911 ORTHO05D005930 0.0e+00 1341.3 1128 61.7
Duzib251G0593 Durio zibethinus HOM05D004911 ORTHO05D005930 0.0e+00 1340.5 1131 61.4
Atru.chr11.1224 Acer truncatum HOM05D004911 ORTHO05D005930 0.0e+00 1333.2 1139 62.4
Prupe.2G211300 Prunus persica HOM05D004911 ORTHO05D005930 0.0e+00 1333.2 1141 62.5
Actinidia04316 Actinidia chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1331.6 1144 61.5
Ciclev10030563m.g Citrus clementina HOM05D004911 ORTHO05D005930 0.0e+00 1327.4 1125 62.8
Lj3C852G13 Lonicera japonica HOM05D004911 ORTHO05D005930 0.0e+00 1326.2 1143 62.0
Cfa008718 Carpinus fangiana HOM05D004911 ORTHO05D005930 0.0e+00 1319.7 1142 61.3
RcHm_v2.0_Chr1g0362961 Rosa chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1316.2 1128 61.1
MD01G1105900 Malus domestica HOM05D004911 ORTHO05D005930 0.0e+00 1307.4 1148 60.9
FAN10G1537 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1306.2 1128 60.4
FAN10G0928 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1305.4 1128 60.4
FAN03G1024 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1304.7 1128 60.2
FAN01G1211 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1304.3 1130 60.2
Rhsim09G0072200 Rhododendron simsii HOM05D004911 ORTHO05D005930 0.0e+00 1301.6 1172 59.7
FvH4_7g19060 Fragaria vesca HOM05D004911 ORTHO05D005930 0.0e+00 1300.0 1129 60.2
MD07G1172300 Malus domestica HOM05D004911 ORTHO05D005930 0.0e+00 1298.5 1147 60.8
FAN06G4750 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1298.1 1129 60.1
ClCG01G007110 Citrullus lanatus HOM05D004911 ORTHO05D005930 0.0e+00 1296.6 1141 61.7
FAN06G1517 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1293.5 1129 60.0
CsaV3_5G017560 Cucumis sativus L. HOM05D004911 ORTHO05D005930 0.0e+00 1293.1 1139 60.4
MELO3C005202.2 Cucumis melo HOM05D004911 ORTHO05D005930 0.0e+00 1290.0 1139 60.7
Hma1.2p1_0183F.1_g081050 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 0.0e+00 1286.6 1089 62.8
Gohir.A04G143200 Gossypium hirsutum HOM05D004911 ORTHO05D005930 0.0e+00 1283.9 1133 59.6
Gorai.012G182900 Gossypium raimondii HOM05D004911 ORTHO05D005930 0.0e+00 1281.9 1133 59.4
Cpa.g.sc63.15 Carica papaya HOM05D004911 ORTHO05D005930 0.0e+00 1281.5 1135 60.5
Gohir.D04G186500 Gossypium hirsutum HOM05D004911 ORTHO05D005930 0.0e+00 1280.4 1133 59.4
PGR044G1924 Punica granatum HOM05D004911 ORTHO05D005930 0.0e+00 1273.1 1132 59.7
EL10Ac9g22915 Beta vulgaris HOM05D004911 ORTHO05D005930 0.0e+00 1253.0 1148 58.2
Sed0025480 Sechium edule HOM05D004911 ORTHO05D005930 0.0e+00 1246.1 1136 59.9
Hund08529 Selenicereus undatus HOM05D004911 ORTHO05D005930 0.0e+00 1234.6 1155 57.0
Glyma.12G027900 Glycine max HOM05D004911 ORTHO05D005930 0.0e+00 1219.9 1130 58.2
ATR0564G294 Amborella trichopoda HOM05D004911 ORTHO05D005930 0.0e+00 1216.4 1178 57.0
Nitab4.5_0000562g0030 Nicotiana tabacum HOM05D004911 ORTHO05D005930 0.0e+00 1214.1 1139 57.1
VMungo1215G1051 Vigna mungo HOM05D004911 ORTHO05D005930 0.0e+00 1209.9 1133 57.7
Lj3g0004396 Lotus japonicus HOM05D004911 ORTHO05D005930 0.0e+00 1207.6 1130 56.9
Solyc10g079850.2 Solanum lycopersicum HOM05D004911 ORTHO05D005930 0.0e+00 1205.7 1142 57.1
PGSC0003DMG400029831 Solanum tuberosum HOM05D004911 ORTHO05D005930 0.0e+00 1204.5 1144 57.2
Sopen10g030460 Solanum pennellii HOM05D004911 ORTHO05D005930 0.0e+00 1202.6 1142 57.2
Medtr4g074460 Medicago truncatula HOM05D004911 ORTHO05D005930 0.0e+00 1201.8 1132 56.8
vmacro16011 Vaccinium macrocarpon HOM05D004911 ORTHO05D005930 0.0e+00 1201.8 1143 57.9
Lsat_1_v5_gn_0_9321 Lactuca sativa HOM05D004911 ORTHO05D005930 0.0e+00 1200.7 1146 56.7
Glyma.11G102800 Glycine max HOM05D004911 ORTHO05D005930 0.0e+00 1197.2 1134 57.2
Ca_25607_v3 Cicer arietinum L. HOM05D004911 ORTHO05D005930 0.0e+00 1193.7 1135 57.3
Psat7g173880 Pisum sativum HOM05D004911 ORTHO05D005930 0.0e+00 1192.6 1134 56.9
COL.COLO4_16624 Corchorus olitorius HOM05D004911 ORTHO05D005930 0.0e+00 1189.5 1131 56.3
Nitab4.5_0000677g0060 Nicotiana tabacum HOM05D004911 ORTHO05D005930 0.0e+00 1189.1 1140 56.4
AUR62015197 Chenopodium quinoa HOM05D004911 ORTHO05D005930 0.0e+00 1187.6 1079 57.7
Peaxi162Scf01315g00114 Petunia axillaris HOM05D004911 ORTHO05D005930 0.0e+00 1186.0 1133 56.9
Ah.01g001680 Amaranthus hybridus HOM05D004911 ORTHO05D005930 0.0e+00 1182.9 1152 55.0
MSTRG.8077 Avicennia marina HOM05D004911 ORTHO05D005930 0.0e+00 1181.4 1136 55.6
HanXRQChr06g0175521 Helianthus annuus HOM05D004911 ORTHO05D005930 0.0e+00 1180.6 1151 55.6
DCAR_023433 Daucus carota HOM05D004911 ORTHO05D005930 0.0e+00 1176.0 1133 56.3
ECA246G1490 Erigeron canadensis HOM05D004911 ORTHO05D005930 0.0e+00 1173.7 1151 55.1
Lalb_Chr19g0139351 Lupinus albus HOM05D004911 ORTHO05D005930 0.0e+00 1168.7 1132 57.2
Sc06g0007820 Simmondsia chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1150.6 1146 55.5
arahy.Tifrunner.gnm1.ann1.Q7DFN3 Arachis hypogaea HOM05D004911 ORTHO05D005930 0.0e+00 1148.7 1021 58.8
CARHR095390 Cardamine hirsuta HOM05D004911 ORTHO05D005930 0.0e+00 1132.9 1146 52.8
SalBow2G3529 Salvia bowleyana HOM05D004911 ORTHO05D005930 0.0e+00 1122.1 1143 54.2
AT3G19870 Arabidopsis thaliana HOM05D004911 ORTHO05D005930 0.0e+00 1119.0 1138 52.0
Carub.0003s1976 Capsella rubella HOM05D004911 ORTHO05D005930 0.0e+00 1112.4 1142 52.4
Cc07_g19490 Coffea canephora HOM05D004911 ORTHO05D005930 0.0e+00 1112.1 1146 52.8
AL3G33410 Arabidopsis lyrata HOM05D004911 ORTHO05D005930 0.0e+00 1111.3 1142 51.8
Migut.H02310 Erythranthe guttata HOM05D004911 ORTHO05D005930 0.0e+00 1107.8 1153 52.7
Sp3g17890 Schrenkiella parvula HOM05D004911 ORTHO05D005930 0.0e+00 1107.4 1143 52.5
Thhalv10019942m.g Eutrema salsugineum HOM05D004911 ORTHO05D005930 0.0e+00 1106.3 1141 52.0
THA.LOC104809147 Tarenaya hassleriana HOM05D004911 ORTHO05D005930 0.0e+00 1098.6 1136 53.1
Aa31LG8G6640 Aethionema arabicum HOM05D004911 ORTHO05D005930 0.0e+00 1094.3 1134 51.7
CAN.G1656.8 Capsicum annuum HOM05D004911 ORTHO05D005930 0.0e+00 1090.1 1031 57.1
A01p34870 Brassica napus HOM05D004911 ORTHO05D005930 0.0e+00 1077.0 1140 51.5
C01p44300 Brassica napus HOM05D004911 ORTHO05D005930 7.7e-312 1074.3 1139 51.1
BolC1t04393H Brassica oleracea HOM05D004911 ORTHO05D005930 7.7e-312 1074.3 1139 51.1
BraA01t03570Z Brassica rapa HOM05D004911 ORTHO05D005930 7.7e-312 1073.9 1140 51.3
SGA_v2.0_scaffold80G25956 Striga asiatica HOM05D004911 ORTHO05D005930 4.2e-300 1035.0 1119 52.2
unitig_22.g6363 Utricularia gibba HOM05D004911 ORTHO05D005930 1.3e-296 1023.5 1132 50.9
SHI04173 Sapria himalayana HOM05D004911 ORTHO05D005930 1.5e-278 963.4 1153 48.5
CDE05G0535 Ceratophyllum demersum HOM05D004911 ORTHO05D005930 1.3e-272 943.7 1128 47.8
BcaC09g48939 Brassica carinata HOM05D004911 ORTHO05D005930 1.2e-265 920.6 1129 46.5
Os02g0829400 Oryza sativa ssp. japonica HOM05D004911 ORTHO05D005930 1.1e-263 914.1 1143 46.1
TPR.G32325 Trifolium pratense HOM05D004911 ORTHO05D005930 6.8e-258 894.8 902 53.7
Eucgr.J00848 Eucalyptus grandis HOM05D004911 ORTHO05D005930 3.4e-257 892.5 764 59.3
CiPaw.05G166600 Carya illinoinensis HOM05D004911 ORTHO05D005930 1.9e-244 850.1 645 67.0
QL03p043438 Quercus lobata HOM05D004911 ORTHO05D005930 1.9e-244 850.1 640 67.3
Mapoly0023s0169 Marchantia polymorpha HOM05D004911 ORTHO05D005930 7.0e-239 831.6 1223 41.1
Hma1.2p1_0183F.1_g081060 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 1.0e-237 827.8 646 66.4
TAR371G0035 Trochodendron aralioides HOM05D004911 ORTHO05D005930 6.2e-227 792.0 559 72.3
Pp3c23_5970 Physcomitrium patens HOM05D004911 ORTHO05D005930 1.1e-226 791.2 1231 39.9
SMO367G0101 Selaginella moellendorffii HOM05D004911 ORTHO05D005930 1.9e-223 780.4 1156 41.3
AUR62017660 Chenopodium quinoa HOM05D004911 ORTHO05D005930 4.6e-214 749.2 646 60.8
Oeu056145.2 Olea europaea HOM05D004911 ORTHO05D005930 6.6e-205 718.8 643 58.0
Haze_11729 Corylus avellana HOM05D004911 ORTHO05D005930 1.9e-196 690.6 607 59.6
TAR371G0490 Trochodendron aralioides HOM05D004911 ORTHO05D005930 2.4e-194 683.7 515 68.5
Phvul.002G058701 Phaseolus vulgaris HOM05D004911 ORTHO05D005930 1.8e-181 641.0 557 60.5
HPP92_012853 Vanilla planifolia HOM05D004911 ORTHO05D005930 1.8e-181 641.0 708 49.7
Zm00001eb259390 Zea mays HOM05D004911 ORTHO05D005930 3.0e-181 640.2 640 51.6
Haze_11728 Corylus avellana HOM05D004911 ORTHO05D005930 6.5e-152 542.7 464 62.5
CiPaw.05G166500 Carya illinoinensis HOM05D004911 ORTHO05D005930 5.7e-148 529.6 487 58.5
QL03p043434 Quercus lobata HOM05D004911 ORTHO05D005930 4.1e-138 496.9 484 57.4
CBR_g20270 Chara braunii HOM05D004911 ORTHO05D005930 7.6e-100 369.8 1601 24.6
AagrBONN_evm.TU.Sc2ySwM_228.3553 Anthoceros agrestis HOM05D004911 ORTHO05D005930 3.9e-96 357.5 514 41.6
HPP92_012844 Vanilla planifolia HOM05D004911 ORTHO05D005930 1.4e-82 312.4 739 35.6
HPP92_012845 Vanilla planifolia HOM05D004911 ORTHO05D005930 1.0e-72 279.6 251 58.6
AagrBONN_evm.TU.Sc2ySwM_228.3554 Anthoceros agrestis HOM05D004911 ORTHO05D005930 2.0e-68 265.4 556 34.5
SHI34912 Sapria himalayana HOM05D004911 ORTHO05D005930 8.7e-64 250.0 557 32.0
SHI47273 Sapria himalayana HOM05D004911 ORTHO05D005930 8.2e-62 243.4 486 34.6
SHI38855 Sapria himalayana HOM05D004911 ORTHO05D005930 1.0e-56 226.5 381 40.7
SHI50333 Sapria himalayana HOM05D004911 ORTHO05D005930 5.3e-53 214.2 517 33.7
SHI42568 Sapria himalayana HOM05D004911 ORTHO05D005930 1.3e-51 209.5 558 29.4
SHI53748 Sapria himalayana HOM05D004911 ORTHO05D005930 4.2e-50 204.5 217 53.5
SHI45395 Sapria himalayana HOM05D004911 ORTHO05D005930 4.4e-39 167.9 671 25.6
SHI45716 Sapria himalayana HOM05D004911 ORTHO05D005930 4.4e-39 167.9 671 25.6
SHI39007 Sapria himalayana HOM05D004911 ORTHO05D005930 2.4e-37 162.2 370 33.2
SHI34911 Sapria himalayana HOM05D004911 ORTHO05D005930 4.1e-37 161.4 262 39.7
SHI39005 Sapria himalayana HOM05D004911 ORTHO05D005930 1.6e-36 159.5 177 48.0
SHI49274 Sapria himalayana HOM05D004911 ORTHO05D005930 2.0e-36 159.1 247 40.5
SHI39004 Sapria himalayana HOM05D004911 ORTHO05D005930 4.2e-34 151.4 201 48.8
SHI42567 Sapria himalayana HOM05D004911 ORTHO05D005930 3.4e-31 141.7 201 45.8
SEGI_29886 Sequoiadendron giganteum HOM05D004911 ORTHO05D005930 1.0e-27 130.2 141 50.4
SHI50603 Sapria himalayana HOM05D004911 ORTHO05D005930 2.9e-27 128.6 211 38.4
SHI51106 Sapria himalayana HOM05D004911 ORTHO05D005930 1.9e-26 125.9 149 45.6
ATR0624G005 Amborella trichopoda HOM05D004911 ORTHO05D005930 6.1e-25 120.9 119 54.6
VMungo0251G2567 Vigna mungo HOM05D004911 ORTHO05D018492 1.1e-21 110.2 79 64.6
SHI38854 Sapria himalayana HOM05D004911 ORTHO05D005930 5.9e-20 104.4 118 47.5
SHI45052 Sapria himalayana HOM05D004911 ORTHO05D005930 1.0e-16 93.6 240 29.2
SHI45396 Sapria himalayana HOM05D004911 ORTHO05D005930 1.4e-16 93.2 255 29.8
SHI45717 Sapria himalayana HOM05D004911 ORTHO05D005930 1.4e-16 93.2 255 29.8
Dinv29855 Davidia involucrata HOM05D004911 ORTHO05D005930 1.2e-15 90.1 53 75.5
EL10Ac2g03601 Beta vulgaris HOM05D004911 ORTHO05D005930 2.4e-13 82.4 58 63.8
SHI45051 Sapria himalayana HOM05D004911 ORTHO05D005930 1.6e-12 79.7 54 66.7
Haze_13501 Corylus avellana HOM05D004911 ORTHO05D005930 2.8e-09 68.9 71 57.7
SMO343G0003 Selaginella moellendorffii HOM05D004911 ORTHO05D005930 5.2e-08 64.7 82 40.2
SHI52879 Sapria himalayana HOM05D004911 ORTHO05D005930 7.5e-07 60.8 150 32.7


User provided reference genes

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