Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G04075 Aquilegia oxysepala HOM05D003263 ORTHO05D004801 0.0e+00 1528.1 762 100.0
TAR629G0765 Trochodendron aralioides HOM05D003263 ORTHO05D004801 0.0e+00 1309.7 762 86.0
Dinv19049 Davidia involucrata HOM05D003263 ORTHO05D004801 0.0e+00 1294.6 757 85.3
Ciclev10019002m.g Citrus clementina HOM05D003263 ORTHO05D004801 0.0e+00 1272.7 722 86.3
Actinidia35722 Actinidia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1272.3 763 83.1
FAN23G0774 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1269.2 717 86.5
RcHm_v2.0_Chr3g0491991 Rosa chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1269.2 734 84.6
FAN26G0816 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1266.9 720 85.8
Atru.chr1.2038 Acer truncatum HOM05D003263 ORTHO05D004801 0.0e+00 1266.1 723 85.9
CiPaw.03G074100 Carya illinoinensis HOM05D003263 ORTHO05D004801 0.0e+00 1265.8 741 83.8
FvH4_1g30070 Fragaria vesca HOM05D003263 ORTHO05D004801 0.0e+00 1265.0 710 87.0
Potri.017G136133 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1262.7 722 85.5
TWI77G0544 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1262.3 760 82.8
CSS0018871 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 0.0e+00 1261.5 760 82.9
TWI74G0116 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1260.7 760 82.5
arahy.Tifrunner.gnm1.ann1.AUXW6G Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1259.2 757 82.3
FAN19G0316 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1259.2 707 86.8
MD17G1267300 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1258.4 760 82.4
Manes.02G078500 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1258.4 722 85.2
Prupe.3G165400 Prunus persica HOM05D003263 ORTHO05D004801 0.0e+00 1258.4 760 82.5
CAN.G222.62 Capsicum annuum HOM05D003263 ORTHO05D004801 0.0e+00 1258.0 757 82.4
Sed0005557 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1258.0 762 82.9
Sopen11g006260 Solanum pennellii HOM05D003263 ORTHO05D004801 0.0e+00 1258.0 736 84.0
Potri.004G082800 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1256.1 760 81.8
Lj6g0025109 Lotus japonicus HOM05D003263 ORTHO05D004801 0.0e+00 1255.4 745 82.1
Solyc11g011470.2 Solanum lycopersicum HOM05D003263 ORTHO05D004801 0.0e+00 1255.4 736 84.0
Gohir.D07G183900 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1254.2 743 84.4
MD09G1268900 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1254.2 760 81.7
Nitab4.5_0011135g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1254.2 757 82.8
PGSC0003DMG400013309 Solanum tuberosum HOM05D003263 ORTHO05D004801 0.0e+00 1254.2 736 83.7
PSO017G4553 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1252.7 764 82.5
PSO478G1645 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1252.7 764 82.5
VMungo1383G2082 Vigna mungo HOM05D003263 ORTHO05D004801 0.0e+00 1252.7 760 81.1
Haze_14285 Corylus avellana HOM05D003263 ORTHO05D004801 0.0e+00 1252.3 743 83.3
Cfa007786 Carpinus fangiana HOM05D003263 ORTHO05D004801 0.0e+00 1251.5 689 88.0
ClCG05G010610 Citrullus lanatus HOM05D003263 ORTHO05D004801 0.0e+00 1251.1 762 82.2
Peaxi162Scf00464g00325 Petunia axillaris HOM05D003263 ORTHO05D004801 0.0e+00 1251.1 739 83.5
CsaV3_3G017880 Cucumis sativus L. HOM05D003263 ORTHO05D004801 0.0e+00 1250.3 762 82.0
ECA238G3173 Erigeron canadensis HOM05D003263 ORTHO05D004801 0.0e+00 1250.3 759 81.9
Sed0016313 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1248.4 735 84.2
Gorai.001G197100 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1247.6 743 82.8
CANSAT56G4352 Cannabis sativa HOM05D003263 ORTHO05D004801 0.0e+00 1246.5 724 84.9
Duzib133G1400 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1246.1 743 83.3
Gohir.A07G176600 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1246.1 742 83.6
Phvul.001G229000 Phaseolus vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1245.7 760 80.8
Thecc.04G063600 Theobroma cacao HOM05D003263 ORTHO05D004801 0.0e+00 1245.7 742 84.0
Glyma.18G041700 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1244.2 758 80.7
Gorai.001G204300 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1244.2 742 83.7
QL02p059434 Quercus lobata HOM05D003263 ORTHO05D004801 0.0e+00 1241.9 750 82.1
Eucgr.J01621 Eucalyptus grandis HOM05D003263 ORTHO05D004801 0.0e+00 1241.5 723 84.8
Ca_17086_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 0.0e+00 1241.1 722 83.5
Cpa.g.sc116.77 Carica papaya HOM05D003263 ORTHO05D004801 0.0e+00 1240.7 760 81.2
MELO3C020331.2 Cucumis melo HOM05D003263 ORTHO05D004801 0.0e+00 1240.7 762 81.4
HanXRQChr07g0191741 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1240.7 758 81.7
Rhsim08G0019700 Rhododendron simsii HOM05D003263 ORTHO05D004801 0.0e+00 1240.3 815 78.5
TPR.G23206 Trifolium pratense HOM05D003263 ORTHO05D004801 0.0e+00 1239.9 760 80.8
Glyma.11G214800 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1239.2 760 80.9
Duzib138G0925 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1237.6 733 83.6
MSTRG.3699 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1236.5 763 82.4
Lalb_Chr18g0053541 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1236.1 760 80.4
Medtr3g065130 Medicago truncatula HOM05D003263 ORTHO05D004801 0.0e+00 1234.6 722 83.2
HanXRQChr14g0444641 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1233.4 724 83.7
Oeu030292.1 Olea europaea HOM05D003263 ORTHO05D004801 0.0e+00 1229.2 793 78.7
Psat5g119880 Pisum sativum HOM05D003263 ORTHO05D004801 0.0e+00 1229.2 722 82.7
SalBow5G3125 Salvia bowleyana HOM05D003263 ORTHO05D004801 0.0e+00 1229.2 761 80.8
COL.COLO4_13315 Corchorus olitorius HOM05D003263 ORTHO05D004801 0.0e+00 1228.8 742 82.9
Zm00001eb216210 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1226.5 754 81.6
Migut.K00926 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1226.1 730 83.6
DCAR_014159 Daucus carota HOM05D003263 ORTHO05D004801 0.0e+00 1225.7 724 83.4
SGA_v2.0_scaffold2G00947 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1223.4 759 80.5
MSTRG.15657 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1223.0 759 80.6
Zm00001eb055050 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1220.7 754 81.2
EL10Ac2g03207 Beta vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1219.9 760 79.5
CDE05G1320 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1218.8 756 80.6
Hund13092 Selenicereus undatus HOM05D003263 ORTHO05D004801 0.0e+00 1217.2 696 84.1
Os03g0713400 Oryza sativa ssp. japonica HOM05D003263 ORTHO05D004801 0.0e+00 1214.9 742 81.4
Lsat_1_v5_gn_3_63961 Lactuca sativa HOM05D003263 ORTHO05D004801 0.0e+00 1213.0 763 79.2
Ah.10g032470 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1211.1 737 81.0
PGR042G3530 Punica granatum HOM05D003263 ORTHO05D004801 0.0e+00 1211.1 723 82.8
AUR62037782 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1209.1 750 79.9
HPP92_020298 Vanilla planifolia HOM05D003263 ORTHO05D004801 0.0e+00 1209.1 762 79.5
Manes.01G120700 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1207.2 730 82.3
unitig_748.g8633 Utricularia gibba HOM05D003263 ORTHO05D004801 0.0e+00 1206.8 747 79.9
AT5G37510 Arabidopsis thaliana HOM05D003263 ORTHO05D004801 0.0e+00 1206.4 744 79.7
Ah.10g032480 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1205.7 742 80.5
CARHR215400 Cardamine hirsuta HOM05D003263 ORTHO05D004801 0.0e+00 1204.9 744 79.6
BcaB06g27086 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1204.5 760 78.8
arahy.Tifrunner.gnm1.ann1.ZZ0CH2 Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1203.7 854 72.7
A04p10660 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1203.7 760 78.8
C04p44380 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1203.0 760 78.7
BraA04t16733Z Brassica rapa HOM05D003263 ORTHO05D004801 0.0e+00 1201.8 760 78.6
AL1G43210 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1201.0 744 79.7
THA.LOC104805635 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1199.1 747 80.5
BcaC02g09578 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1197.6 760 78.4
BolC4t26009H Brassica oleracea HOM05D003263 ORTHO05D004801 0.0e+00 1197.6 760 78.4
Sc14g0006900 Simmondsia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1197.6 761 78.3
Carub.0007s3268 Capsella rubella HOM05D003263 ORTHO05D004801 0.0e+00 1194.9 744 78.9
Thhalv10027640m.g Eutrema salsugineum HOM05D003263 ORTHO05D004801 0.0e+00 1194.5 744 79.4
Aa31LG9G17530 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1194.1 760 78.3
Aa31LG9G17520 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1192.9 766 77.8
THA.LOC104822242 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1189.1 723 80.5
AL7G46270 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1184.1 777 76.1
Migut.H02232 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1183.3 763 78.1
Cc07_g13220 Coffea canephora HOM05D003263 ORTHO05D004801 0.0e+00 1177.5 657 86.9
ATR0118G003 Amborella trichopoda HOM05D003263 ORTHO05D004801 0.0e+00 1167.1 778 75.6
Gohir.A07G170100 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1161.4 657 86.0
Gohir.D07G176300 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1160.6 657 85.8
Lalb_Chr15g0085021 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1159.8 760 76.3
AUR62042225 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1150.2 747 77.2
SGA_v2.0_scaffold108G30966 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1148.3 762 76.1
CDE05G1041 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1140.9 756 75.8
Nitab4.5_0006562g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1140.6 679 83.8
GSVIVG01030914001 Vitis vinifera HOM05D003263 ORTHO05D004801 0.0e+00 1137.5 657 85.1
SHI30113 Sapria himalayana HOM05D003263 ORTHO05D004801 0.0e+00 1129.4 714 78.3
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 0.0e+00 1118.6 1072 58.1
vmacro18524 Vaccinium macrocarpon HOM05D003263 ORTHO05D004801 0.0e+00 1111.3 761 76.5
Nn4g24447 Nelumbo nucifera HOM05D003263 ORTHO05D004801 0.0e+00 1091.3 633 85.8
Dinv28178 Davidia involucrata HOM05D003263 ORTHO05D004801 4.8e-308 1060.8 724 74.7
SMO331G0029 Selaginella moellendorffii HOM05D003263 ORTHO05D004801 2.1e-287 992.3 676 69.2
AagrBONN_evm.TU.Sc2ySwM_228.2430 Anthoceros agrestis HOM05D003263 ORTHO05D004801 2.8e-284 981.9 679 69.4
Pp3c19_19270 Physcomitrium patens HOM05D003263 ORTHO05D004801 4.9e-284 981.1 676 70.4
Pp3c1_34100 Physcomitrium patens HOM05D003263 ORTHO05D004801 1.4e-283 979.5 676 70.4
Pp3c1_34110 Physcomitrium patens HOM05D003263 ORTHO05D004801 1.4e-283 979.5 676 70.4
Pp3c1_34140 Physcomitrium patens HOM05D003263 ORTHO05D004801 1.2e-282 976.5 676 70.1
Mapoly0153s0030 Marchantia polymorpha HOM05D003263 ORTHO05D004801 6.8e-278 960.7 680 68.4
arahy.Tifrunner.gnm1.ann1.5H82NF Arachis hypogaea HOM05D003263 ORTHO05D004801 3.6e-263 911.8 596 76.3
arahy.Tifrunner.gnm1.ann1.RIP12T Arachis hypogaea HOM05D003263 ORTHO05D004801 1.4e-259 899.8 596 75.8
CBR_g6354 Chara braunii HOM05D003263 ORTHO05D004801 2.3e-249 865.9 675 61.9
Cre12.g535950 Chlamydomonas reinhardtii HOM05D003263 ORTHO05D004801 1.1e-230 803.9 679 57.7
MCO08G340 Micromonas commoda HOM05D003263 ORTHO05D004801 2.5e-224 782.7 693 57.3
TAR371G0371 Trochodendron aralioides HOM05D003263 ORTHO05D004801 2.8e-215 752.7 685 62.6
PRCOL_00000346 Prasinoderma coloniale HOM05D003263 ORTHO05D004801 4.6e-210 735.3 675 56.1
Cfa025667 Carpinus fangiana HOM05D003263 ORTHO05D004801 2.7e-194 682.9 680 50.9
Haze_26802 Corylus avellana HOM05D003263 ORTHO05D004801 1.4e-174 617.5 704 47.2
arahy.Tifrunner.gnm1.ann1.HY7M04 Arachis hypogaea HOM05D000164 ORTHO05D004801 1.8e-169 600.5 361 80.3
SpUN1596_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 7.0e-158 562.0 305 87.9
Oeu062704.1 Olea europaea HOM05D003263 ORTHO05D004801 1.9e-155 553.9 336 84.5
Thecc.K0008100 Theobroma cacao HOM05D003263 ORTHO05D004801 1.1e-139 501.5 296 85.5
arahy.Tifrunner.gnm1.ann1.Z93KCA Arachis hypogaea HOM05D003263 ORTHO05D004801 1.2e-133 481.5 301 79.4
Oeu062706.1 Olea europaea HOM05D003263 ORTHO05D004801 1.6e-125 454.5 308 74.0
SpUn1854_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 2.1e-117 427.6 293 71.3
Potri.017G136950 Populus trichocarpa HOM05D003263 ORTHO05D004801 1.0e-108 398.7 237 81.4
CSS0049015 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 6.0e-101 372.9 297 66.7
Thecc.K0008200 Theobroma cacao HOM05D003263 ORTHO05D004801 1.3e-98 365.2 219 83.1
CSS0039899 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 2.2e-98 364.4 296 65.2
Sabra17G0054900 Salix brachista HOM05D003263 ORTHO05D004801 4.8e-98 363.2 241 75.1
Eucgr.J01637 Eucalyptus grandis HOM05D003263 ORTHO05D004801 2.0e-83 314.7 198 78.3
Oeu039332.1 Olea europaea HOM05D003263 ORTHO05D004801 8.2e-74 282.7 172 77.9
arahy.Tifrunner.gnm1.ann1.VKQW11 Arachis hypogaea HOM05D003263 ORTHO05D004801 1.8e-65 255.0 126 94.4
SEGI_21193 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 1.0e-63 249.2 175 71.4
Actinidia28797 Actinidia chinensis HOM05D003263 ORTHO05D004801 1.7e-63 248.4 400 44.8
Haze_27240 Corylus avellana HOM05D003263 ORTHO05D004801 2.9e-63 247.7 364 39.0
MD16G1264300 Malus domestica HOM05D003263 ORTHO05D004801 3.2e-62 244.2 260 53.8
arahy.Tifrunner.gnm1.ann1.SN393R Arachis hypogaea HOM05D003263 ORTHO05D004801 1.7e-58 231.9 114 93.9
SEGI_05320 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 6.1e-45 186.8 164 61.0
HanXRQChr17g0559491 Helianthus annuus HOM05D003263 ORTHO05D004801 5.2e-44 183.7 121 75.2
VMungo0647G1524 Vigna mungo HOM05D003263 ORTHO05D004801 3.7e-42 177.6 104 76.0
SEGI_04560 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 1.0e-39 169.5 202 50.5
Sabra17G0112400 Salix brachista HOM05D003263 ORTHO05D003497 2.5e-38 164.9 122 68.0
QL04p097132 Quercus lobata HOM05D003263 ORTHO05D000041 1.2e-35 156.0 86 82.6
CBR_g44347 Chara braunii HOM05D003263 ORTHO05D004801 1.3e-31 142.5 138 51.4
Migut.M00197 Erythranthe guttata HOM05D003263 ORTHO05D004801 3.3e-30 137.9 119 65.5
Ca_19082_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 9.5e-30 136.3 83 79.5
Hund13091 Selenicereus undatus HOM05D003263 ORTHO05D004801 1.1e-28 132.9 105 61.9
Cc04_g05630 Coffea canephora HOM05D003263 ORTHO05D004801 5.8e-27 127.1 75 80.0
MD16G1264400 Malus domestica HOM05D003263 ORTHO05D004801 4.9e-26 124.0 61 93.4
Hma1.2p1_1425F.1_g282850 Hydrangea macrophylla HOM05D003263 ORTHO05D004801 9.2e-25 119.8 99 65.7
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 6.6e-23 113.6 220 30.5
CSS0022568 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 1.1e-17 96.3 117 51.3
TPR.G18971 Trifolium pratense HOM05D003263 ORTHO05D004801 6.0e-16 90.5 56 78.6
QL08p053439 Quercus lobata HOM05D003263 ORTHO05D004801 1.7e-15 89.0 50 80.0
TPR.G11234 Trifolium pratense HOM05D003263 ORTHO05D004801 1.2e-11 76.3 42 88.1
SEGI_40032 Sequoiadendron giganteum HOM05D003263 ORTHO05D024792 1.5e-11 75.9 42 83.3
Cc00_g06720 Coffea canephora HOM05D003263 ORTHO05D004801 2.2e-10 72.0 38 89.5


User provided reference genes

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