Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G04067 Aquilegia oxysepala HOM05D002544 ORTHO05D007856 0.0e+00 1300.0 666 100.0
Nn3g18419 Nelumbo nucifera HOM05D002544 ORTHO05D007856 2.0e-270 935.6 664 71.1
TAR622G0658 Trochodendron aralioides HOM05D002544 ORTHO05D007856 4.4e-265 917.9 667 70.0
PSO063G6024 Papaver somniferum HOM05D002544 ORTHO05D007856 2.0e-257 892.5 671 66.6
PSO782G4267 Papaver somniferum HOM05D002544 ORTHO05D007856 5.8e-257 891.0 671 66.8
Dinv19050 Davidia involucrata HOM05D002544 ORTHO05D007856 9.2e-255 883.6 668 66.3
GSVIVG01030701001 Vitis vinifera HOM05D002544 ORTHO05D007856 6.0e-254 880.9 672 67.0
MD17G1267200 Malus domestica HOM05D002544 ORTHO05D007856 6.6e-253 877.5 670 66.6
Hma1.2p1_0158F.1_g070010 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 1.2e-249 866.7 648 67.1
Prupe.3G165300 Prunus persica HOM05D002544 ORTHO05D007856 1.2e-249 866.7 645 67.4
Manes.02G078600 Manihot esculenta HOM05D002544 ORTHO05D007856 8.4e-248 860.5 655 64.7
QL03p020295 Quercus lobata HOM05D002544 ORTHO05D007856 8.4e-248 860.5 665 64.4
CiPaw.03G074200 Carya illinoinensis HOM05D002544 ORTHO05D007856 7.1e-247 857.4 643 66.4
RcHm_v2.0_Chr3g0492061 Rosa chinensis HOM05D002544 ORTHO05D007856 1.6e-246 856.3 669 64.6
Ciclev10000514m.g Citrus clementina HOM05D002544 ORTHO05D007856 2.7e-246 855.5 662 64.5
Gohir.D05G289100 Gossypium hirsutum HOM05D002544 ORTHO05D007856 6.6e-245 850.9 669 64.6
Gorai.009G304200 Gossypium raimondii HOM05D002544 ORTHO05D007856 6.6e-245 850.9 669 64.6
FvH4_1g30060 Fragaria vesca HOM05D002544 ORTHO05D007856 4.3e-244 848.2 669 64.0
Gohir.A05G287900 Gossypium hirsutum HOM05D002544 ORTHO05D007856 4.3e-244 848.2 669 64.0
CSS0008925 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 5.6e-244 847.8 668 63.5
CSS0046327 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 1.6e-243 846.3 669 63.4
Atru.chr1.2033 Acer truncatum HOM05D002544 ORTHO05D007856 2.1e-243 845.9 663 64.6
Duzib128G1814 Durio zibethinus HOM05D002544 ORTHO05D007856 1.1e-242 843.6 700 61.1
Glyma.18G041900 Glycine max HOM05D002544 ORTHO05D007856 5.8e-241 837.8 668 62.7
VMungo1383G1931 Vigna mungo HOM05D002544 ORTHO05D007856 1.3e-240 836.6 652 63.3
Lj4A258G27 Lonicera japonica HOM05D002544 ORTHO05D007856 2.1e-238 829.3 645 66.4
CANSAT25G3407 Cannabis sativa HOM05D002544 ORTHO05D007856 3.5e-238 828.6 664 62.3
Glyma.11G214700 Glycine max HOM05D002544 ORTHO05D007856 3.5e-238 828.6 666 62.2
Lalb_Chr18g0053551 Lupinus albus HOM05D002544 ORTHO05D007856 6.0e-238 827.8 663 62.6
TWI53G0412 Tripterygium wilfordii HOM05D002544 ORTHO05D007856 6.0e-238 827.8 662 63.0
Phvul.001G228700 Phaseolus vulgaris HOM05D002544 ORTHO05D007856 1.5e-236 823.2 663 62.3
CsaV3_3G017820 Cucumis sativus L. HOM05D002544 ORTHO05D007856 9.6e-236 820.5 669 62.2
arahy.Tifrunner.gnm1.ann1.5E142I Arachis hypogaea HOM05D002544 ORTHO05D007856 2.1e-235 819.3 667 60.9
Potri.004G082900 Populus trichocarpa HOM05D002544 ORTHO05D007856 2.8e-235 818.9 662 62.1
arahy.Tifrunner.gnm1.ann1.644H52 Arachis hypogaea HOM05D002544 ORTHO05D007856 4.8e-235 818.1 665 61.2
Sed0025118 Sechium edule HOM05D002544 ORTHO05D007856 5.3e-234 814.7 665 61.4
Actinidia17196 Actinidia chinensis HOM05D002544 ORTHO05D007856 6.9e-234 814.3 668 60.9
Actinidia06481 Actinidia chinensis HOM05D002544 ORTHO05D007856 9.0e-234 813.9 668 61.2
Rhsim10G0180300 Rhododendron simsii HOM05D002544 ORTHO05D007856 1.5e-233 813.1 663 62.1
Lj6g0017134 Lotus japonicus HOM05D002544 ORTHO05D007856 3.4e-233 812.0 665 61.8
Haze_14286 Corylus avellana HOM05D002544 ORTHO05D007856 7.6e-233 810.8 669 62.8
Sc04g0005080 Simmondsia chinensis HOM05D002544 ORTHO05D007856 7.6e-233 810.8 664 61.3
Ca_17085_v3 Cicer arietinum L. HOM05D002544 ORTHO05D007856 9.9e-233 810.4 643 63.9
PGR004G1819 Punica granatum HOM05D002544 ORTHO05D007856 9.9e-233 810.4 665 62.0
Sopen11g006270 Solanum pennellii HOM05D002544 ORTHO05D007856 3.8e-232 808.5 668 61.2
TPR.G23205 Trifolium pratense HOM05D002544 ORTHO05D007856 1.4e-231 806.6 673 61.2
COL.COLO4_38545 Corchorus olitorius HOM05D002544 ORTHO05D007856 2.4e-231 805.8 693 59.7
Solyc11g011480.2 Solanum lycopersicum HOM05D002544 ORTHO05D007856 2.4e-231 805.8 668 61.1
Eucgr.F02879 Eucalyptus grandis HOM05D002544 ORTHO05D007856 9.3e-231 803.9 687 59.7
CAN.G222.63 Capsicum annuum HOM05D002544 ORTHO05D007856 3.5e-230 802.0 667 60.9
Medtr3g065110 Medicago truncatula HOM05D002544 ORTHO05D007856 3.0e-229 798.9 669 61.0
MBI13_g24909_MAGBIO Magnolia biondii HOM05D002544 ORTHO05D007856 1.5e-228 796.6 708 61.4
DCAR_014158 Daucus carota HOM05D002544 ORTHO05D007856 4.8e-227 791.6 670 61.2
Nitab4.5_0011135g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 8.1e-227 790.8 650 61.8
Cfa007785 Carpinus fangiana HOM05D002544 ORTHO05D007856 1.4e-226 790.0 631 63.2
Migut.K00933 Erythranthe guttata HOM05D002544 ORTHO05D007856 7.6e-225 784.3 670 59.6
vmacro20587 Vaccinium macrocarpon HOM05D002544 ORTHO05D007856 7.6e-225 784.3 678 59.4
AL5G33420 Arabidopsis lyrata HOM05D002544 ORTHO05D007856 9.9e-225 783.9 663 58.7
THA.LOC104805637 Tarenaya hassleriana HOM05D002544 ORTHO05D007856 1.3e-224 783.5 693 57.3
Oeu030291.2 Olea europaea HOM05D002544 ORTHO05D007856 3.8e-224 781.9 723 56.4
Carub.0005s1906 Capsella rubella HOM05D002544 ORTHO05D007856 3.2e-223 778.9 663 58.7
A04p06810 Brassica napus HOM05D002544 ORTHO05D007856 7.1e-223 777.7 657 59.4
AT3G52640 Arabidopsis thaliana HOM05D002544 ORTHO05D007856 1.6e-222 776.5 663 57.9
FAN28G1090 Fragaria x ananassa HOM05D002544 ORTHO05D007856 3.5e-222 775.4 669 60.5
ATR0118G015 Amborella trichopoda HOM05D002544 ORTHO05D007856 6.0e-222 774.6 667 61.0
Sabra04G0055200 Salix brachista HOM05D002544 ORTHO05D007856 1.0e-221 773.9 734 55.2
Sp5g09650 Schrenkiella parvula HOM05D002544 ORTHO05D007856 1.3e-221 773.5 663 57.8
EL10Ac2g03312 Beta vulgaris HOM05D002544 ORTHO05D007856 1.5e-220 770.0 664 59.2
BcaC02g09234 Brassica carinata HOM05D002544 ORTHO05D007856 2.4e-218 762.7 658 58.2
HanXRQChr16g0532811 Helianthus annuus HOM05D002544 ORTHO05D007856 2.4e-218 762.7 667 59.1
C04p40360 Brassica napus HOM05D002544 ORTHO05D007856 9.0e-218 760.8 657 58.4
BcaB02g08559 Brassica carinata HOM05D002544 ORTHO05D007856 5.8e-217 758.1 652 58.3
BraA04t16380Z Brassica rapa HOM05D002544 ORTHO05D007856 2.5e-215 752.7 708 54.9
Thhalv10010197m.g Eutrema salsugineum HOM05D002544 ORTHO05D007856 1.2e-214 750.4 634 58.2
Aa31LG10G7700 Aethionema arabicum HOM05D002544 ORTHO05D007856 1.6e-214 750.0 690 55.9
FAN19G2740 Fragaria x ananassa HOM05D002544 ORTHO05D007856 3.5e-214 748.8 579 65.6
ClCG05G010690 Citrullus lanatus HOM05D002544 ORTHO05D007856 1.8e-213 746.5 695 55.7
Thecc.10G105700 Theobroma cacao HOM05D002544 ORTHO05D007856 2.3e-213 746.1 580 65.0
CDE05G1209 Ceratophyllum demersum HOM05D002544 ORTHO05D007856 3.9e-213 745.3 665 58.5
Os02g0736500 Oryza sativa ssp. japonica HOM05D002544 ORTHO05D007856 3.9e-213 745.3 650 58.9
ECA236G0457 Erigeron canadensis HOM05D002544 ORTHO05D007856 2.5e-212 742.7 631 60.2
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 2.8e-211 739.2 645 58.8
Lsat_1_v5_gn_3_63981 Lactuca sativa HOM05D002544 ORTHO05D007856 4.5e-209 731.9 645 59.1
BolC4t25616H Brassica oleracea HOM05D002544 ORTHO05D007856 5.0e-208 728.4 727 52.7
AUR62040737 Chenopodium quinoa HOM05D002544 ORTHO05D007856 4.2e-207 725.3 662 57.1
Peaxi162Scf00464g00433 Petunia axillaris HOM05D002544 ORTHO05D007856 1.2e-206 723.8 648 56.9
Cc07_g13210 Coffea canephora HOM05D002544 ORTHO05D007856 2.8e-203 712.6 572 63.1
SGA_v2.0_scaffold45G17141 Striga asiatica HOM05D002544 ORTHO05D007277 4.8e-203 711.8 638 58.5
Ah.10g032440 Amaranthus hybridus HOM05D002544 ORTHO05D007856 3.6e-198 695.7 697 53.4
Cpa.g.sc116.76 Carica papaya HOM05D002544 ORTHO05D007856 2.0e-196 689.9 557 61.8
Nitab4.5_0006562g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 5.7e-196 688.3 630 57.9
Psat5g119600 Pisum sativum HOM05D002544 ORTHO05D007856 2.6e-193 679.5 577 61.5
FAN26G1528 Fragaria x ananassa HOM05D002544 ORTHO05D007856 4.5e-193 678.7 669 54.7
AUR62037665 Chenopodium quinoa HOM05D002544 ORTHO05D007856 1.0e-189 667.5 666 54.1
PGSC0003DMG400013310 Solanum tuberosum HOM05D002544 ORTHO05D007856 5.5e-183 645.2 514 64.0
unitig_748.g8462 Utricularia gibba HOM05D002544 ORTHO05D007856 1.4e-181 640.6 672 52.2
HPP92_026943 Vanilla planifolia HOM05D002544 ORTHO05D007856 3.5e-169 599.4 596 55.4
SMO115G0276 Selaginella moellendorffii HOM05D002544 ORTHO05D007856 3.2e-167 592.8 648 48.3
Mapoly0182s0008 Marchantia polymorpha HOM05D002544 ORTHO05D007856 6.1e-166 588.6 674 47.2
CARHR162460 Cardamine hirsuta HOM05D002544 ORTHO05D007856 1.0e-165 587.8 494 60.3
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 4.1e-162 575.9 519 58.2
AagrBONN_evm.TU.Sc2ySwM_228.3612 Anthoceros agrestis HOM05D002544 ORTHO05D007856 1.6e-145 520.8 697 42.5
Hma1.2p1_0158F.1_g070020 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 6.4e-131 472.2 352 67.0
Pp3c25_11440 Physcomitrium patens HOM05D002544 ORTHO05D007856 1.2e-124 451.4 578 45.3
QL02p059469 Quercus lobata HOM05D002544 ORTHO05D007856 6.2e-110 402.5 308 64.9
Lj4C412G0 Lonicera japonica HOM05D002544 ORTHO05D007856 6.3e-86 322.8 367 51.8
SEGI_34556 Sequoiadendron giganteum HOM05D002544 ORTHO05D007856 1.1e-85 322.0 307 55.4
Hund13079 Selenicereus undatus HOM05D002544 ORTHO05D007856 3.3e-79 300.4 355 48.7
Cre06.g294400 Chlamydomonas reinhardtii HOM05D002544 ORTHO05D007856 5.3e-77 293.1 639 32.6
HPP92_021312 Vanilla planifolia HOM05D002544 ORTHO05D007856 1.4e-69 268.5 240 61.7
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 1.4e-61 241.9 333 44.1
CBR_g26303 Chara braunii HOM05D002544 ORTHO05D000002 1.4e-48 198.7 301 37.9
CARHR162470 Cardamine hirsuta HOM05D002544 ORTHO05D007856 4.0e-48 197.2 172 54.1
MCO14G034 Micromonas commoda HOM05D002544 ORTHO05D007856 1.0e-43 182.6 731 26.1
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 1.0e-40 172.6 324 34.0
Zm00001eb289130 Zea mays HOM05D002544 ORTHO05D007856 7.5e-31 139.8 144 52.8
CBR_g37928 Chara braunii HOM05D000601 ORTHO05D000301 3.0e-27 127.9 174 42.0
Zm00001eb340210 Zea mays HOM05D002544 ORTHO05D007856 2.5e-26 124.8 125 51.2
CBR_g26304 Chara braunii HOM05D002544 ORTHO05D007856 1.1e-24 119.4 114 57.0
Cc07_g13200 Coffea canephora HOM05D002544 ORTHO05D007856 5.4e-21 107.1 97 53.6
HPP92_026942 Vanilla planifolia HOM05D002544 ORTHO05D007856 7.3e-18 96.7 91 53.8
HPP92_021314 Vanilla planifolia HOM05D002544 ORTHO05D007856 2.2e-14 85.1 74 54.1
Haze_22892 Corylus avellana HOM05D002544 ORTHO05D007856 1.9e-13 82.0 102 42.2
FvH4_4g11392 Fragaria vesca HOM05D000005 ORTHO05D000012 4.2e-13 80.9 50 74.0
FAN02G2717 Fragaria x ananassa HOM05D002544 ORTHO05D007856 4.2e-13 80.9 60 68.3
FAN12G0356 Fragaria x ananassa HOM05D002544 ORTHO05D007856 1.2e-12 79.3 60 66.7
Hma1.2p1_0594F.1_g185860 Hydrangea macrophylla HOM05D006828 ORTHO05D008312 6.0e-12 77.0 73 53.4
FAN02G1722 Fragaria x ananassa HOM05D002544 ORTHO05D007856 7.8e-12 76.6 60 66.7
Gohir.A10G100500 Gossypium hirsutum HOM05D002544 ORTHO05D033931 2.5e-10 71.6 42 78.6
HPP92_021313 Vanilla planifolia HOM05D002544 ORTHO05D007856 4.3e-10 70.9 66 53.0
C04p40260 Brassica napus HOM05D002544 ORTHO05D007856 1.2e-09 69.3 62 51.6
BolC4t25605H Brassica oleracea HOM05D002544 ORTHO05D007856 1.2e-09 69.3 62 51.6
CSS0029470 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 2.4e-08 65.1 45 68.9
CSS0043407 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 2.4e-08 65.1 45 66.7
SGA_v2.0_scaffold17G07933 Striga asiatica HOM05D002544 ORTHO05D399483 1.3e-06 59.3 36 66.7
QL02p059474 Quercus lobata HOM05D002544 ORTHO05D007856 8.4e-06 56.6 34 64.7


User provided reference genes

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