Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G04032 Aquilegia oxysepala HOM05D006412 ORTHO05D008025 2.4e-204 715.3 364 100.0
Cfa007858 Carpinus fangiana HOM05D006412 ORTHO05D008025 4.4e-150 535.0 364 72.0
GSVIVG01030886001 Vitis vinifera HOM05D006412 ORTHO05D008025 1.1e-145 520.4 364 70.9
Prupe.3G152400 Prunus persica HOM05D006412 ORTHO05D008025 2.1e-144 516.2 363 70.2
FAN24G3364 Fragaria x ananassa HOM05D006412 ORTHO05D008025 8.0e-144 514.2 360 69.2
FvH4_2g04020 Fragaria vesca HOM05D006412 ORTHO05D008025 1.0e-143 513.8 360 69.2
RcHm_v2.0_Chr3g0493551 Rosa chinensis HOM05D006412 ORTHO05D008025 6.8e-143 511.1 362 69.6
Nn3g18189 Nelumbo nucifera HOM05D006412 ORTHO05D008025 1.3e-141 506.9 364 69.2
RcHm_v2.0_Chr3g0491591 Rosa chinensis HOM05D006412 ORTHO05D008025 2.9e-141 505.8 362 68.8
MD09G1260600 Malus domestica HOM05D006412 ORTHO05D008025 8.3e-141 504.2 363 68.3
PSO384G0683 Papaver somniferum HOM05D006412 ORTHO05D008025 8.3e-141 504.2 364 69.2
Cpa.g.sc116.15 Carica papaya HOM05D006412 ORTHO05D008025 1.4e-140 503.4 362 67.7
FAN15G2201 Fragaria x ananassa HOM05D006412 ORTHO05D008025 1.4e-140 503.4 360 68.1
Lj2g0003354 Lotus japonicus HOM05D006412 ORTHO05D008025 1.4e-140 503.4 361 70.1
Atru.chr1.1777 Acer truncatum HOM05D006412 ORTHO05D008025 5.4e-140 501.5 364 67.3
Cc07_g08250 Coffea canephora HOM05D006412 ORTHO05D008025 2.7e-139 499.2 360 67.2
TWI74G1556 Tripterygium wilfordii HOM05D006412 ORTHO05D008025 3.5e-139 498.8 363 66.9
Sabra17G0104300 Salix brachista HOM05D006412 ORTHO05D008025 7.8e-139 497.7 364 67.3
SalBow3G1843 Salvia bowleyana HOM05D006412 ORTHO05D008025 7.8e-139 497.7 364 66.5
Sopen02g035910 Solanum pennellii HOM05D006412 ORTHO05D008025 5.0e-138 495.0 363 69.7
Nitab4.5_0003598g0080 Nicotiana tabacum HOM05D006412 ORTHO05D008025 6.6e-138 494.6 362 69.1
PSO339G1787 Papaver somniferum HOM05D006412 ORTHO05D008025 6.6e-138 494.6 364 67.6
Sabra17G0101600 Salix brachista HOM05D006412 ORTHO05D008025 8.6e-138 494.2 364 67.0
PGR042G1412 Punica granatum HOM05D006412 ORTHO05D008025 1.1e-137 493.8 330 72.7
Solyc02g091290.3 Solanum lycopersicum HOM05D006412 ORTHO05D008025 3.3e-137 492.3 365 68.8
PGSC0003DMG400030600 Solanum tuberosum HOM05D006412 ORTHO05D008025 5.6e-137 491.5 360 69.4
Manes.01G114900 Manihot esculenta HOM05D006412 ORTHO05D008025 7.3e-137 491.1 333 70.0
VMungo0464G0110 Vigna mungo HOM05D006412 ORTHO05D008025 2.8e-136 489.2 359 68.5
MELO3C020307.2 Cucumis melo HOM05D006412 ORTHO05D008025 3.6e-136 488.8 362 67.1
Gorai.001G085900 Gossypium raimondii HOM05D006412 ORTHO05D008025 3.6e-136 488.8 333 71.5
Eucgr.F02693 Eucalyptus grandis HOM05D006412 ORTHO05D008025 6.2e-136 488.0 362 63.8
Gohir.D07G080800 Gossypium hirsutum HOM05D006412 ORTHO05D008025 8.0e-136 487.6 331 71.6
ClCG05G010820 Citrullus lanatus HOM05D006412 ORTHO05D008025 1.1e-135 487.3 385 64.7
BcaC08g46048 Brassica carinata HOM05D006412 ORTHO05D008025 1.8e-135 486.5 364 66.5
C06p39860 Brassica napus HOM05D006412 ORTHO05D008025 1.8e-135 486.5 364 66.5
Nitab4.5_0002456g0120 Nicotiana tabacum HOM05D006412 ORTHO05D008025 4.0e-135 485.3 362 67.4
BraA07t30973Z Brassica rapa HOM05D006412 ORTHO05D008025 5.2e-135 485.0 364 65.7
Sed0012276 Sechium edule HOM05D006412 ORTHO05D008025 5.2e-135 485.0 333 70.6
Aa31LG2G3160 Aethionema arabicum HOM05D006412 ORTHO05D008025 1.2e-134 483.8 364 65.7
BcaB03g15262 Brassica carinata HOM05D006412 ORTHO05D008025 1.5e-134 483.4 364 65.9
CAN.G625.77 Capsicum annuum HOM05D006412 ORTHO05D008025 1.5e-134 483.4 364 67.9
HanXRQChr09g0262341 Helianthus annuus HOM05D006412 ORTHO05D008025 1.5e-134 483.4 369 66.4
BolC6t39074H Brassica oleracea HOM05D006412 ORTHO05D008025 2.0e-134 483.0 364 65.9
THA.LOC104822436 Tarenaya hassleriana HOM05D006412 ORTHO05D008025 2.0e-134 483.0 364 66.8
Peaxi162Scf00803g00420 Petunia axillaris HOM05D006412 ORTHO05D008025 5.8e-134 481.5 362 68.2
MSTRG.2784 Avicennia marina HOM05D006412 ORTHO05D008025 1.7e-133 479.9 366 64.8
Sc11g0008580 Simmondsia chinensis HOM05D006412 ORTHO05D008025 1.7e-133 479.9 332 71.1
Migut.L00473 Erythranthe guttata HOM05D006412 ORTHO05D008025 2.2e-133 479.6 365 65.5
AT1G66520 Arabidopsis thaliana HOM05D006412 ORTHO05D008025 8.3e-133 477.6 360 66.1
A07p33470 Brassica napus HOM05D006412 ORTHO05D008025 8.3e-133 477.6 364 65.4
AL2G22970 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 1.9e-132 476.5 360 66.1
Glyma.05G001000 Glycine max HOM05D006412 ORTHO05D008025 1.9e-132 476.5 364 65.4
Medtr6g003980 Medicago truncatula HOM05D006412 ORTHO05D008025 1.9e-132 476.5 347 66.6
Oeu030807.1 Olea europaea HOM05D006412 ORTHO05D008025 1.9e-132 476.5 385 63.4
Ca_24327_v3 Cicer arietinum L. HOM05D006412 ORTHO05D008025 5.4e-132 474.9 364 64.6
AUR62026045 Chenopodium quinoa HOM05D006412 ORTHO05D008025 9.2e-132 474.2 359 66.9
AUR62032836 Chenopodium quinoa HOM05D006412 ORTHO05D008025 1.2e-131 473.8 359 66.9
CANSAT78G1038 Cannabis sativa HOM05D006412 ORTHO05D008025 3.5e-131 472.2 360 65.0
SGA_v2.0_scaffold174G39268 Striga asiatica HOM05D006412 ORTHO05D008025 3.5e-131 472.2 357 65.5
Phvul.004G001300 Phaseolus vulgaris HOM05D006412 ORTHO05D008025 6.0e-131 471.5 334 69.5
ECA232G0076 Erigeron canadensis HOM05D006412 ORTHO05D008025 1.0e-130 470.7 367 65.1
Sp5g21570 Schrenkiella parvula HOM05D006412 ORTHO05D008025 1.0e-130 470.7 359 65.5
TPR.G25248 Trifolium pratense HOM05D006412 ORTHO05D008025 1.3e-130 470.3 330 68.8
Carub.0002s1254 Capsella rubella HOM05D006412 ORTHO05D008025 3.0e-130 469.2 360 65.6
Lsat_1_v5_gn_4_154881 Lactuca sativa HOM05D006412 ORTHO05D008025 3.9e-130 468.8 366 63.9
vmacro18058 Vaccinium macrocarpon HOM05D006412 ORTHO05D008025 4.3e-129 465.3 415 59.5
Lalb_Chr03g0035001 Lupinus albus HOM05D006412 ORTHO05D008025 4.4e-126 455.3 330 66.1
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 3.7e-125 452.2 347 65.1
Dinv14869 Davidia involucrata HOM05D006412 ORTHO05D008025 3.7e-125 452.2 364 65.9
EL10Ac2g04491 Beta vulgaris HOM05D006412 ORTHO05D008025 1.1e-124 450.7 363 62.5
MBI16_g24204_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.6e-123 446.8 359 65.5
CSS0049075 Camellia sinensis var. sinensis HOM05D006412 ORTHO05D008025 2.1e-123 446.4 281 75.4
Os01g0687500 Oryza sativa ssp. japonica HOM05D006412 ORTHO05D008025 3.5e-123 445.7 357 61.9
QL12p004163 Quercus lobata HOM05D006412 ORTHO05D008025 3.5e-123 445.7 363 62.8
Ciclev10013714m.g Citrus clementina HOM05D006412 ORTHO05D008025 4.7e-120 435.3 438 55.3
Hund16200 Selenicereus undatus HOM05D006412 ORTHO05D008025 4.7e-120 435.3 329 66.0
TAR629G1190 Trochodendron aralioides HOM05D006412 ORTHO05D008025 2.4e-119 433.0 263 77.6
COL.COLO4_27119 Corchorus olitorius HOM05D006412 ORTHO05D008025 8.9e-119 431.0 364 60.4
unitig_32.g11755 Utricularia gibba HOM05D006412 ORTHO05D008025 1.2e-118 430.6 312 65.7
HPP92_024416 Vanilla planifolia HOM05D006412 ORTHO05D008025 2.2e-117 426.4 363 59.8
ATR0686G130 Amborella trichopoda HOM05D006412 ORTHO05D008025 7.3e-113 411.4 315 66.7
Lj2A436G33 Lonicera japonica HOM05D006412 ORTHO05D008025 7.3e-113 411.4 333 63.7
arahy.Tifrunner.gnm1.ann1.QMY2CQ Arachis hypogaea HOM05D002475 ORTHO05D002710 1.4e-111 407.1 339 62.8
arahy.Tifrunner.gnm1.ann1.1V0F05 Arachis hypogaea HOM05D002475 ORTHO05D008025 2.6e-110 402.9 333 63.1
MBI16_g44113_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 9.3e-108 394.4 368 59.2
Pp3c16_620 Physcomitrium patens HOM05D006412 ORTHO05D008025 3.9e-106 389.0 330 60.0
AUR62023199 Chenopodium quinoa HOM05D006412 ORTHO05D008025 6.6e-106 388.3 359 57.4
CiPaw.03G067700 Carya illinoinensis HOM05D006412 ORTHO05D008025 1.4e-103 380.6 267 71.9
SMO147G0011 Selaginella moellendorffii HOM05D006412 ORTHO05D008025 1.5e-102 377.1 339 54.0
Potri.017G123300 Populus trichocarpa HOM05D006412 ORTHO05D008025 5.8e-102 375.2 269 70.6
AagrBONN_evm.TU.Sc2ySwM_344.1769 Anthoceros agrestis HOM05D006412 ORTHO05D008025 3.8e-101 372.5 337 57.0
Gohir.A07G076300 Gossypium hirsutum HOM05D006412 ORTHO05D008025 1.1e-100 370.9 235 76.6
SHI30139 Sapria himalayana HOM05D006412 ORTHO05D008025 1.6e-99 367.1 301 60.5
CsaV3_3G017690 Cucumis sativus L. HOM05D006412 ORTHO05D008025 1.3e-98 364.0 266 68.8
Duzib133G0980 Durio zibethinus HOM05D006412 ORTHO05D008025 2.8e-96 356.3 275 64.7
Thecc.04G123200 Theobroma cacao HOM05D006412 ORTHO05D008025 2.8e-96 356.3 266 67.3
SEGI_18017 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 2.4e-95 353.2 273 62.6
Zm00001eb156380 Zea mays HOM05D006412 ORTHO05D008025 2.6e-94 349.7 249 69.9
Psat1g052240 Pisum sativum HOM05D006412 ORTHO05D008025 3.4e-94 349.4 261 66.7
Thhalv10019000m.g Eutrema salsugineum HOM05D006412 ORTHO05D008025 8.4e-93 344.7 266 65.0
CBR_g48389 Chara braunii HOM05D006412 ORTHO05D008025 1.1e-92 344.4 367 51.2
CARHR058440 Cardamine hirsuta HOM05D006412 ORTHO05D008025 7.9e-91 338.2 262 65.3
Rhsim08G0084800 Rhododendron simsii HOM05D006412 ORTHO05D008025 2.9e-85 319.7 207 75.8
DCAR_025879 Daucus carota HOM05D006412 ORTHO05D008025 2.5e-84 316.6 306 54.6
Cre12.g560550 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 1.8e-79 300.4 339 47.2
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 1.3e-77 294.3 188 75.0
MCO14G351 Micromonas commoda HOM05D006412 ORTHO05D008025 5.5e-68 262.3 340 44.1
Mapoly0147s0006 Marchantia polymorpha HOM05D006412 ORTHO05D008025 2.8e-64 250.0 185 65.9
PRCOL_00006745 Prasinoderma coloniale HOM05D006412 ORTHO05D008025 4.5e-62 242.7 439 36.7
Cre09.g392729 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 1.4e-50 204.5 375 35.5
SEGI_40413 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 2.3e-50 203.8 217 49.3
AL2G24420 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 5.2e-50 202.6 219 50.2
TAR206G0005 Trochodendron aralioides HOM05D006412 ORTHO05D008025 2.4e-47 193.7 148 67.6
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 1.7e-37 161.0 148 58.8
MBI08_g39920_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 2.3e-37 160.6 151 59.6
Pp3s46_10 Physcomitrium patens HOM05D001724 ORTHO05D007284 1.9e-36 157.5 316 33.2
Mapoly0147s0008 Marchantia polymorpha HOM05D006412 ORTHO05D008025 8.3e-32 142.1 146 52.1
MBI13_g41159_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 2.9e-29 133.7 136 56.6
SEGI_25003 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 1.9e-28 131.0 118 55.9
FAN20G0335 Fragaria x ananassa HOM05D006412 ORTHO05D008025 6.8e-26 122.5 107 61.7
Rhsim08G0085000 Rhododendron simsii HOM05D006412 ORTHO05D008025 2.0e-25 120.9 96 60.4
Ca_29143_v3 Cicer arietinum L. HOM05D006412 ORTHO05D007284 2.2e-24 117.5 214 36.4
HanXRQChr03g0068601 Helianthus annuus HOM05D006412 ORTHO05D008025 1.4e-23 114.8 75 72.0
HanXRQChr01g0030591 Helianthus annuus HOM05D006412 ORTHO05D008025 1.6e-22 111.3 73 71.2
HanXRQChr16g0531301 Helianthus annuus HOM05D006412 ORTHO05D008025 4.6e-22 109.8 81 67.9
AL2G23010 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 1.1e-20 105.1 91 57.1
SGA_v2.0_scaffold9G04970 Striga asiatica HOM05D006412 ORTHO05D008025 6.4e-16 89.4 80 63.8
CBR_g23882 Chara braunii HOM05D021767 ORTHO05D024942 2.9e-08 63.9 232 24.6
TAR629G1092 Trochodendron aralioides HOM05D003894 ORTHO05D004584 9.2e-07 58.9 142 31.7
Ca_29267_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 1.2e-06 58.5 96 32.3
Sabra03G0048400 Salix brachista HOM05D003894 ORTHO05D004584 1.6e-06 58.2 145 31.0
GSVIVG01004722001 Vitis vinifera HOM05D003894 ORTHO05D004584 2.7e-06 57.4 123 34.1
Pp3s32_101 Physcomitrium patens HOM05D005388 ORTHO05D006281 3.5e-06 57.0 127 29.1
Ciclev10020835m.g Citrus clementina HOM05D003894 ORTHO05D004584 4.6e-06 56.6 132 31.1


User provided reference genes

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