Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G03997 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 6.8e-67 257.3 139 100.0
Aqoxy3G03994 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 3.1e-35 152.1 133 63.9
Aqoxy3G03996 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 8.1e-28 127.5 128 59.4
Aqoxy3G03995 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 2.0e-26 122.9 130 54.6
Nn4g23971 Nelumbo nucifera HOM05D004062 ORTHO05D004417 4.6e-23 111.7 134 47.8
Nn3g17968 Nelumbo nucifera HOM05D004062 ORTHO05D004417 3.0e-22 109.0 125 52.0
TAR622G0216 Trochodendron aralioides HOM05D004062 ORTHO05D004417 1.2e-20 103.6 125 50.4
Dinv33967 Davidia involucrata HOM05D004062 ORTHO05D004417 1.1e-19 100.5 133 45.1
TAR629G2241 Trochodendron aralioides HOM05D004062 ORTHO05D004417 1.8e-19 99.8 127 48.0
CiPaw.04G044300 Carya illinoinensis HOM05D004062 ORTHO05D004417 4.0e-19 98.6 126 49.2
TAR622G1405 Trochodendron aralioides HOM05D004062 ORTHO05D004417 4.0e-19 98.6 122 51.6
Eucgr.F02795 Eucalyptus grandis HOM05D004062 ORTHO05D004417 6.8e-19 97.8 131 45.0
COL.COLO4_09380 Corchorus olitorius HOM05D004062 ORTHO05D004417 8.9e-19 97.4 129 48.1
Dinv34790 Davidia involucrata HOM05D002710 ORTHO05D002905 1.2e-18 97.1 125 44.8
QL02p050215 Quercus lobata HOM05D004062 ORTHO05D004417 1.2e-18 97.1 124 48.4
Thecc.04G128000 Theobroma cacao HOM05D004062 ORTHO05D004417 1.5e-18 96.7 133 44.4
Haze_14190 Corylus avellana HOM05D004062 ORTHO05D004417 2.6e-18 95.9 125 46.4
CiPaw.03G065300 Carya illinoinensis HOM05D004062 ORTHO05D004417 6.4e-17 91.3 125 48.0
Potri.010G119200 Populus trichocarpa HOM05D004062 ORTHO05D004417 1.4e-16 90.1 123 43.9
Hma1.2p1_0500F.1_g167200 Hydrangea macrophylla HOM05D004062 ORTHO05D004417 1.9e-16 89.7 128 43.0
Manes.02G072000 Manihot esculenta HOM05D004062 ORTHO05D004417 2.4e-16 89.4 132 42.4
PGR004G1762 Punica granatum HOM05D004062 ORTHO05D004417 3.2e-16 89.0 133 44.4
Manes.01G113100 Manihot esculenta HOM05D004062 ORTHO05D004417 4.2e-16 88.6 122 45.9
Potri.004G095150 Populus trichocarpa HOM05D004062 ORTHO05D004417 5.4e-16 88.2 128 41.4
Potri.004G095200 Populus trichocarpa HOM05D004062 ORTHO05D004417 5.4e-16 88.2 128 41.4
Potri.017G119800 Populus trichocarpa HOM05D004062 ORTHO05D004417 5.4e-16 88.2 129 40.3
Cc07_g08490 Coffea canephora HOM05D004062 ORTHO05D004417 9.3e-16 87.4 137 45.3
Sabra04G0064400 Salix brachista HOM05D004062 ORTHO05D004417 9.3e-16 87.4 129 41.1
Duzib138G0221 Durio zibethinus HOM05D004062 ORTHO05D004417 1.2e-15 87.0 124 44.4
Rhsim08G0083900 Rhododendron simsii HOM05D004062 ORTHO05D004417 1.2e-15 87.0 125 40.8
MBI16_g14297_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 2.1e-15 86.3 125 46.4
MBI16_g14298_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 2.1e-15 86.3 123 45.5
Sabra17G0098800 Salix brachista HOM05D004062 ORTHO05D004417 2.7e-15 85.9 125 46.4
Gohir.A11G166400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 6.0e-15 84.7 133 40.6
MBI16_g14296_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 7.8e-15 84.3 128 44.5
Sabra10G0089600 Salix brachista HOM05D004062 ORTHO05D004417 7.8e-15 84.3 135 43.0
MBI10_g08537_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 3.0e-14 82.4 138 42.0
Eucgr.B02857 Eucalyptus grandis HOM05D004062 ORTHO05D004417 3.9e-14 82.0 135 41.5
Thecc.02G220400 Theobroma cacao HOM05D004062 ORTHO05D004417 3.9e-14 82.0 136 39.7
Cpa.g.sc314.3 Carica papaya HOM05D004062 ORTHO05D004417 5.1e-14 81.6 129 41.9
Ciclev10018020m.g Citrus clementina HOM05D004062 ORTHO05D004417 5.1e-14 81.6 139 40.3
Actinidia15903 Actinidia chinensis HOM05D002710 ORTHO05D002905 6.6e-14 81.3 131 38.2
Ciclev10017934m.g Citrus clementina HOM05D004062 ORTHO05D004417 6.6e-14 81.3 134 40.3
Lj1g0013725 Lotus japonicus HOM05D004062 ORTHO05D004417 6.6e-14 81.3 124 41.1
Rhsim09G0103200 Rhododendron simsii HOM05D004062 ORTHO05D004417 6.6e-14 81.3 130 37.7
CSS0038275 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 1.1e-13 80.5 125 40.0
CSS0019285 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 1.5e-13 80.1 125 40.0
Glyma.18G293600 Glycine max HOM05D004062 ORTHO05D004417 1.5e-13 80.1 124 42.7
Glyma.02G089400 Glycine max HOM05D004062 ORTHO05D004417 1.9e-13 79.7 131 42.0
RcHm_v2.0_Chr4g0434311 Rosa chinensis HOM05D004062 ORTHO05D004417 1.9e-13 79.7 136 44.1
Prupe.1G317600 Prunus persica HOM05D004062 ORTHO05D004417 2.5e-13 79.3 133 40.6
Ciclev10017837m.g Citrus clementina HOM05D004062 ORTHO05D004417 3.3e-13 79.0 139 40.3
Ciclev10013069m.g Citrus clementina HOM05D004062 ORTHO05D004417 5.6e-13 78.2 136 41.2
DCAR_010706 Daucus carota HOM05D004062 ORTHO05D004417 5.6e-13 78.2 134 42.5
MBI18_g04358_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 5.6e-13 78.2 125 44.8
CANSAT78G1768 Cannabis sativa HOM05D004062 ORTHO05D004417 7.3e-13 77.8 119 38.7
Rhsim09G0103100 Rhododendron simsii HOM05D004062 ORTHO05D004417 7.3e-13 77.8 129 41.1
Ciclev10013668m.g Citrus clementina HOM05D004062 ORTHO05D004417 9.6e-13 77.4 134 40.3
Haze_00662 Corylus avellana HOM05D004062 ORTHO05D004417 9.6e-13 77.4 130 40.8
Prupe.1G317700 Prunus persica HOM05D004062 ORTHO05D004417 9.6e-13 77.4 132 43.9
FvH4_4g26630 Fragaria vesca HOM05D004062 ORTHO05D004417 1.1e-11 73.9 137 40.9
FAN12G0456 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.1e-11 73.9 137 40.9
FAN12G4350 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.1e-11 73.9 137 40.9
FAN17G2092 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.4e-11 73.6 131 38.9
EL10Ac2g04523 Beta vulgaris HOM05D004062 ORTHO05D004417 1.8e-11 73.2 140 37.1
Ciclev10013071m.g Citrus clementina HOM05D004062 ORTHO05D004417 1.8e-11 73.2 132 40.9
FAN07G0543 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.8e-11 73.2 131 38.9
Gohir.D11G172800 Gossypium hirsutum HOM05D004062 ORTHO05D004417 2.4e-11 72.8 133 33.8
Oeu012583.1 Olea europaea HOM05D004062 ORTHO05D004417 2.4e-11 72.8 129 39.5
Gohir.D11G172400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 3.1e-11 72.4 133 33.8
FAN22G1760 Fragaria x ananassa HOM05D004062 ORTHO05D004417 5.3e-11 71.6 131 38.2
ATR0706G120 Amborella trichopoda HOM05D003529 ORTHO05D004106 6.9e-11 71.2 125 39.2
Gorai.007G185100 Gossypium raimondii HOM05D004062 ORTHO05D004417 6.9e-11 71.2 133 33.1
FvH4_4g26620 Fragaria vesca HOM05D004062 ORTHO05D004417 1.2e-10 70.5 135 40.7
FAN12G1602 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.2e-10 70.5 135 40.7
Lj1g0027246 Lotus japonicus HOM05D004062 ORTHO05D004417 1.2e-10 70.5 125 40.0
Ciclev10018255m.g Citrus clementina HOM05D004062 ORTHO05D004417 1.5e-10 70.1 137 40.9
Dinv16146 Davidia involucrata HOM05D004062 ORTHO05D004417 2.0e-10 69.7 121 38.8
FAN12G1821 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.6e-10 69.3 135 40.0
DCAR_010711 Daucus carota HOM05D004062 ORTHO05D004417 3.4e-10 68.9 133 36.1
FvH4_4g26590 Fragaria vesca HOM05D004062 ORTHO05D004417 4.4e-10 68.6 135 39.3
FAN07G0530 Fragaria x ananassa HOM05D004062 ORTHO05D004417 5.8e-10 68.2 135 39.3
VMungo1383G0607 Vigna mungo HOM05D004062 ORTHO05D004417 5.8e-10 68.2 124 36.3
FvH4_4g26582 Fragaria vesca HOM05D004062 ORTHO05D004417 7.6e-10 67.8 135 37.0
PGR102G0077 Punica granatum HOM05D004062 ORTHO05D004417 7.6e-10 67.8 139 41.7
SalBow3G0055 Salvia bowleyana HOM05D004062 ORTHO05D004417 7.6e-10 67.8 102 40.2
DCAR_010713 Daucus carota HOM05D004062 ORTHO05D004417 9.9e-10 67.4 123 38.2
FAN17G2061 Fragaria x ananassa HOM05D004062 ORTHO05D004417 9.9e-10 67.4 135 39.3
FAN22G1832 Fragaria x ananassa HOM05D004062 ORTHO05D004417 9.9e-10 67.4 135 40.0
Migut.H00242 Erythranthe guttata HOM05D004062 ORTHO05D004417 1.3e-09 67.0 135 34.8
FAN12G3833 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.3e-09 67.0 134 38.8
Ah.16g101490 Amaranthus hybridus HOM05D004062 ORTHO05D004417 1.7e-09 66.6 132 36.4
Medtr7g082740 Medicago truncatula HOM05D004062 ORTHO05D004417 1.7e-09 66.6 128 39.1
Cfa015829 Carpinus fangiana HOM05D004062 ORTHO05D004417 2.2e-09 66.2 87 47.1
Phvul.008G008700 Phaseolus vulgaris HOM05D004062 ORTHO05D004417 2.9e-09 65.9 126 37.3
Phvul.008G008800 Phaseolus vulgaris HOM05D004062 ORTHO05D004417 2.9e-09 65.9 127 37.8
RcHm_v2.0_Chr4g0434241 Rosa chinensis HOM05D004062 ORTHO05D004417 2.9e-09 65.9 143 38.5
arahy.Tifrunner.gnm1.ann1.56V7KA Arachis hypogaea HOM05D004062 ORTHO05D004417 3.8e-09 65.5 132 35.6
arahy.Tifrunner.gnm1.ann1.RE711V Arachis hypogaea HOM05D004062 ORTHO05D004417 3.8e-09 65.5 132 35.6
TWI31G0152 Tripterygium wilfordii HOM05D004062 ORTHO05D004417 3.8e-09 65.5 137 39.4
Dinv31584 Davidia involucrata HOM05D004062 ORTHO05D004417 4.9e-09 65.1 87 46.0
Medtr7g082700 Medicago truncatula HOM05D004062 ORTHO05D004417 4.9e-09 65.1 128 38.3
Rhsim10G0073300 Rhododendron simsii HOM05D004062 ORTHO05D004417 6.4e-09 64.7 121 32.2
DCAR_010710 Daucus carota HOM05D004062 ORTHO05D004417 8.4e-09 64.3 129 34.9
ECA236G3228 Erigeron canadensis HOM05D003529 ORTHO05D004106 8.4e-09 64.3 123 39.0
Lalb_Chr04g0257671 Lupinus albus HOM05D004062 ORTHO05D004417 8.4e-09 64.3 124 33.9
SGA_v2.0_scaffold202G41473 Striga asiatica HOM05D004062 ORTHO05D004417 8.4e-09 64.3 133 37.6
Cfa015828 Carpinus fangiana HOM05D004062 ORTHO05D004417 1.4e-08 63.5 94 42.6
ClCG01G005940 Citrullus lanatus HOM05D004062 ORTHO05D004417 1.4e-08 63.5 124 38.7
FAN22G1944 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.4e-08 63.5 143 37.1
Medtr7g082730 Medicago truncatula HOM05D004062 ORTHO05D004417 1.4e-08 63.5 129 40.3
Oeu030797.1 Olea europaea HOM05D004062 ORTHO05D004417 1.9e-08 63.2 136 38.2
Oeu030798.1 Olea europaea HOM05D004062 ORTHO05D004417 1.9e-08 63.2 136 38.2
Rhsim01G0288700 Rhododendron simsii HOM05D003529 ORTHO05D004106 1.9e-08 63.2 129 38.8
TPR.G16561 Trifolium pratense HOM05D004062 ORTHO05D004417 1.9e-08 63.2 127 38.6
Migut.L00492 Erythranthe guttata HOM05D004062 ORTHO05D004417 2.4e-08 62.8 138 36.2
Lsat_1_v5_gn_3_82781 Lactuca sativa HOM05D004062 ORTHO05D004417 3.2e-08 62.4 122 40.2
CDE10G0393 Ceratophyllum demersum HOM05D004062 ORTHO05D004417 4.2e-08 62.0 129 29.5
DCAR_010707 Daucus carota HOM05D004062 ORTHO05D004417 4.2e-08 62.0 131 32.8
Lalb_Chr17g0335981 Lupinus albus HOM05D004062 ORTHO05D004417 4.2e-08 62.0 123 39.0
Psat3g097360 Pisum sativum HOM05D004062 ORTHO05D004417 5.4e-08 61.6 129 37.2
SalBow5G1592 Salvia bowleyana HOM05D004062 ORTHO05D004417 5.4e-08 61.6 122 36.9
TPR.G16550 Trifolium pratense HOM05D004062 ORTHO05D004417 5.4e-08 61.6 127 38.6
Atru.chr1.1607 Acer truncatum HOM05D004062 ORTHO05D004417 7.1e-08 61.2 135 33.3
MSTRG.23597 Avicennia marina HOM05D004062 ORTHO05D004417 9.3e-08 60.8 133 36.8
Cc11_g09580 Coffea canephora HOM05D004062 ORTHO05D004417 9.3e-08 60.8 126 34.9
Ca_08095_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 1.2e-07 60.5 129 36.4
DCAR_010708 Daucus carota HOM05D004062 ORTHO05D004417 1.6e-07 60.1 108 35.2
MBI18_g42974_MAGBIO Magnolia biondii HOM05D003529 ORTHO05D004106 1.6e-07 60.1 124 35.5
MBI18_g45029_MAGBIO Magnolia biondii HOM05D003529 ORTHO05D004106 1.6e-07 60.1 124 35.5
Ca_08096_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 2.1e-07 59.7 129 38.0
Aqoxy3G00188 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 2.7e-07 59.3 125 36.8
CANSAT25G0832 Cannabis sativa HOM05D003529 ORTHO05D004106 2.7e-07 59.3 133 35.3
Psat3g097320 Pisum sativum HOM05D004062 ORTHO05D004417 2.7e-07 59.3 126 38.1
HPP92_006902 Vanilla planifolia HOM05D003529 ORTHO05D004106 2.7e-07 59.3 122 32.8
Thhalv10001673m.g Eutrema salsugineum HOM05D003529 ORTHO05D004106 3.5e-07 58.9 124 37.1
Oeu041981.1 Olea europaea HOM05D004062 ORTHO05D004417 4.6e-07 58.5 98 39.8
Oeu047438.1 Olea europaea HOM05D004062 ORTHO05D004417 4.6e-07 58.5 124 36.3
PGSC0003DMG400016976 Solanum tuberosum HOM05D004062 ORTHO05D004417 4.6e-07 58.5 124 38.7
PGSC0003DMG400030667 Solanum tuberosum HOM05D004062 ORTHO05D004417 4.6e-07 58.5 124 38.7
Actinidia14929 Actinidia chinensis HOM05D004062 ORTHO05D004417 6.0e-07 58.2 136 34.6
Glyma.19G214300 Glycine max HOM05D003529 ORTHO05D004106 6.0e-07 58.2 128 36.7
Sed0002432 Sechium edule HOM05D003529 ORTHO05D004106 7.9e-07 57.8 127 34.6
AUR62023219 Chenopodium quinoa HOM05D004062 ORTHO05D004417 1.3e-06 57.0 141 31.9
AUR62044612 Chenopodium quinoa HOM05D004062 ORTHO05D004417 1.3e-06 57.0 141 31.9
Cc01_g21210 Coffea canephora HOM05D003529 ORTHO05D004106 1.3e-06 57.0 127 32.3
CsaV3_4G001080 Cucumis sativus L. HOM05D003529 ORTHO05D004106 1.3e-06 57.0 133 32.3
Nn3g21602 Nelumbo nucifera HOM05D003529 ORTHO05D004106 1.3e-06 57.0 136 36.0
DCAR_010712 Daucus carota HOM05D004062 ORTHO05D004417 1.7e-06 56.6 123 37.4
Lsat_1_v5_gn_8_165720 Lactuca sativa HOM05D003529 ORTHO05D004106 1.7e-06 56.6 124 38.7
SGA_v2.0_scaffold334G49044 Striga asiatica HOM05D003529 ORTHO05D004106 2.3e-06 56.2 126 31.7
MELO3C017929.2 Cucumis melo HOM05D003529 ORTHO05D004106 3.0e-06 55.8 125 34.4
SEGI_14476 Sequoiadendron giganteum HOM05D003529 ORTHO05D004106 3.0e-06 55.8 135 28.9
TAR636G2223 Trochodendron aralioides HOM05D003529 ORTHO05D004106 3.0e-06 55.8 125 34.4
HPP92_009718 Vanilla planifolia HOM05D004062 ORTHO05D004417 3.0e-06 55.8 144 31.9
Glyma.02G089500 Glycine max HOM05D004062 ORTHO05D004417 5.1e-06 55.1 129 34.9
BcaC07g40776 Brassica carinata HOM05D003529 ORTHO05D004106 6.6e-06 54.7 128 36.7
Ciclev10017483m.g Citrus clementina HOM05D004062 ORTHO05D004417 6.6e-06 54.7 133 34.6
Phvul.001G211200 Phaseolus vulgaris HOM05D003529 ORTHO05D004106 6.6e-06 54.7 128 39.1
Manes.14G107900 Manihot esculenta HOM05D004062 ORTHO05D004417 8.7e-06 54.3 126 34.1
VMungo1383G2158 Vigna mungo HOM05D004062 ORTHO05D004417 8.7e-06 54.3 127 33.9


User provided reference genes

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