Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 6.3e-150 534.3 304 100.0
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 7.1e-85 318.2 286 61.9
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 1.3e-83 313.9 285 60.4
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 2.4e-77 293.1 285 57.5
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 1.3e-75 287.3 279 58.8
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 1.8e-72 276.9 278 58.3
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 2.0e-71 273.5 272 57.4
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 1.7e-70 270.4 282 56.0
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 2.9e-70 269.6 286 55.2
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 6.4e-70 268.5 286 55.2
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 8.4e-70 268.1 280 55.7
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 1.1e-69 267.7 281 54.8
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 2.4e-69 266.5 317 51.7
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 2.4e-69 266.5 317 51.7
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 9.3e-69 264.6 275 54.9
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 9.3e-69 264.6 275 55.3
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 9.3e-69 264.6 275 54.9
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 9.3e-69 264.6 275 55.3
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 2.1e-68 263.5 275 55.3
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 3.5e-68 262.7 280 52.1
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 7.8e-68 261.5 275 54.9
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 2.3e-67 260.0 296 52.0
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 1.9e-66 256.9 287 54.0
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 1.9e-66 256.9 291 53.3
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 2.5e-66 256.5 280 51.4
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 2.5e-66 256.5 279 53.8
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 4.3e-66 255.8 294 53.1
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 5.6e-66 255.4 281 55.5
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 8.1e-65 251.5 295 53.2
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 1.4e-64 250.8 280 52.9
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 1.4e-64 250.8 270 51.5
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 4.0e-64 249.2 278 52.5
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 4.0e-64 249.2 277 54.2
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 9.0e-64 248.1 317 50.5
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 1.5e-63 247.3 298 49.7
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 2.6e-63 246.5 246 58.5
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 3.4e-63 246.1 278 54.3
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 4.4e-63 245.7 281 51.6
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 7.6e-63 245.0 291 53.3
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 7.6e-63 245.0 281 53.0
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 1.7e-62 243.8 281 51.2
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 2.2e-62 243.4 284 51.8
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 2.9e-62 243.0 280 51.4
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 3.8e-62 242.7 278 51.4
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 8.4e-62 241.5 280 51.4
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 1.1e-61 241.1 280 51.8
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 1.1e-61 241.1 288 53.1
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 1.1e-61 241.1 285 50.5
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 1.1e-61 241.1 286 52.4
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 1.4e-61 240.7 278 52.5
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 1.9e-61 240.4 294 49.3
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 2.4e-61 240.0 287 52.3
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 4.2e-61 239.2 287 49.5
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 5.4e-61 238.8 280 50.7
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 7.1e-61 238.4 280 51.8
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 9.3e-61 238.0 283 53.0
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 9.3e-61 238.0 280 51.4
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 1.2e-60 237.7 281 51.6
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 1.2e-60 237.7 292 52.1
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 1.6e-60 237.3 259 51.7
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 2.1e-60 236.9 286 52.1
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 2.7e-60 236.5 283 50.9
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 4.6e-60 235.7 295 49.8
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 7.9e-60 235.0 302 49.3
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 1.0e-59 234.6 283 50.2
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 1.0e-59 234.6 283 50.2
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 1.0e-59 234.6 303 49.8
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 1.0e-59 234.6 277 52.0
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 1.7e-59 233.8 278 50.7
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 1.7e-59 233.8 268 53.0
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 1.7e-59 233.8 277 51.6
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 1.7e-59 233.8 288 49.3
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 2.3e-59 233.4 292 49.0
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 6.6e-59 231.9 287 49.1
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 6.6e-59 231.9 273 49.1
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 1.9e-58 230.3 285 49.8
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 5.6e-58 228.8 293 49.8
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 1.3e-57 227.6 289 50.9
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 2.8e-57 226.5 303 51.5
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 3.6e-57 226.1 307 50.2
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 3.6e-57 226.1 290 49.7
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 6.2e-57 225.3 276 50.7
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 1.4e-56 224.2 232 55.6
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 4.0e-56 222.6 297 49.5
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 5.3e-56 222.2 297 49.5
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 6.9e-56 221.9 279 48.4
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 1.2e-55 221.1 301 48.5
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 1.2e-55 221.1 279 47.7
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 1.5e-55 220.7 280 47.9
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 2.6e-55 219.9 287 49.1
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 5.8e-55 218.8 296 46.6
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 7.6e-55 218.4 289 47.8
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 3.8e-54 216.1 271 49.1
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 3.8e-54 216.1 276 49.3
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.4e-53 214.2 292 49.3
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 9.3e-53 211.5 281 50.5
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 6.0e-52 208.8 301 44.9
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 1.0e-51 208.0 275 47.6
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 3.0e-51 206.5 278 46.4
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 5.1e-51 205.7 270 50.4
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 1.9e-50 203.8 279 43.7
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 1.9e-50 203.8 329 47.1
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 5.6e-50 202.2 295 46.8
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 7.4e-50 201.8 274 49.6
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 2.8e-49 199.9 254 46.9
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 8.1e-49 198.4 289 46.4
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 1.4e-48 197.6 286 45.8
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 2.4e-48 196.8 277 48.0
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 3.1e-48 196.4 294 46.3
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 6.9e-48 195.3 290 45.2
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 6.9e-48 195.3 277 46.6
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 9.0e-48 194.9 282 45.7
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 9.0e-48 194.9 290 45.2
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 2.0e-47 193.7 291 45.0
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 2.6e-47 193.4 291 45.0
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 3.4e-47 193.0 273 45.8
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.3e-46 191.0 226 49.6
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 1.7e-46 190.7 280 45.4
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 2.2e-46 190.3 292 44.2
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 1.4e-45 187.6 282 45.0
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 4.2e-45 186.0 288 44.1
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 5.5e-45 185.7 199 55.3
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 7.1e-45 185.3 246 47.6
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 9.3e-45 184.9 283 45.6
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 3.0e-43 179.9 154 62.3
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 3.9e-43 179.5 335 37.9
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 2.5e-42 176.8 278 46.4
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 1.3e-41 174.5 224 48.7
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 6.2e-41 172.2 224 48.2
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 1.4e-40 171.0 168 57.1
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 4.1e-40 169.5 268 43.3
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 3.4e-39 166.4 268 43.7
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 1.3e-38 164.5 268 42.9
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 2.2e-38 163.7 189 53.4
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 1.4e-37 161.0 156 57.1
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 3.2e-37 159.8 151 58.3
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 3.2e-37 159.8 131 64.9
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 3.2e-37 159.8 267 40.4
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 2.7e-36 156.8 271 44.6
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 4.6e-36 156.0 162 54.3
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 6.1e-36 155.6 267 40.4
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 1.2e-28 131.3 144 52.1
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 4.6e-28 129.4 220 41.8
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 1.5e-26 124.4 167 46.7
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 4.3e-26 122.9 110 56.4
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 1.7e-25 120.9 110 55.5
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 4.8e-25 119.4 263 38.0
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 1.2e-23 114.8 119 49.6
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 1.2e-23 114.8 119 49.6
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 8.5e-22 108.6 291 34.0
Nn091s42875 Nelumbo nucifera HOM05D004323 ORTHO05D005140 2.0e-18 97.4 104 55.8
Lsat_1_v5_gn_3_83040 Lactuca sativa HOM05D004323 ORTHO05D005140 2.6e-18 97.1 150 48.7
MELO3C018369.2 Cucumis melo HOM05D004323 ORTHO05D005140 4.4e-18 96.3 121 52.9
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 4.4e-18 96.3 78 65.4
CSS0012754 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.8e-16 90.9 133 45.9
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 4.1e-16 89.7 155 37.4
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 2.3e-11 73.9 168 33.9
Duzib138G1259 Durio zibethinus HOM05D004323 ORTHO05D005140 4.0e-11 73.2 150 39.3
Sed0022868 Sechium edule HOM05D004323 ORTHO05D005140 2.0e-10 70.9 55 69.1
AL7G52902 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 1.4e-08 64.7 54 59.3
SEGI_05570 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 1.2e-07 61.6 101 42.6
QL02p048579 Quercus lobata HOM05D004323 ORTHO05D005140 3.5e-07 60.1 105 35.2
FAN16G1718 Fragaria x ananassa HOM05D004323 ORTHO05D005140 2.2e-06 57.4 50 62.0


User provided reference genes

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