Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G03921 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 2.2e-216 755.4 382 100.0
Nn3g17760 Nelumbo nucifera HOM05D004418 ORTHO05D005222 5.2e-85 318.9 356 55.9
Nn4g23746 Nelumbo nucifera HOM05D004418 ORTHO05D005222 2.7e-81 306.6 363 54.8
TAR462G0001 Trochodendron aralioides HOM05D004418 ORTHO05D005222 5.0e-80 302.4 343 56.6
Prupe.3G239700 Prunus persica HOM05D004418 ORTHO05D005222 4.1e-74 282.7 344 52.6
Thecc.04G137500 Theobroma cacao HOM05D004418 ORTHO05D005222 7.0e-74 282.0 347 52.4
CiPaw.04G040400 Carya illinoinensis HOM05D004418 ORTHO05D005222 6.6e-72 275.4 344 53.5
Potri.017G112600 Populus trichocarpa HOM05D004418 ORTHO05D005222 3.3e-71 273.1 361 51.2
Cc07_g09010 Coffea canephora HOM05D004418 ORTHO05D005222 2.1e-70 270.4 323 51.7
GSVIVG01036443001 Vitis vinifera HOM05D004418 ORTHO05D005222 2.1e-70 270.4 338 53.3
CiPaw.03G059700 Carya illinoinensis HOM05D004418 ORTHO05D005222 4.7e-70 269.2 334 51.5
Dinv34848 Davidia involucrata HOM05D004418 ORTHO05D005222 6.2e-70 268.9 290 57.9
Cfa007945 Carpinus fangiana HOM05D004418 ORTHO05D005222 4.0e-69 266.2 344 51.5
Sabra04G0078200 Salix brachista HOM05D004418 ORTHO05D005222 2.0e-68 263.8 357 51.0
Actinidia36309 Actinidia chinensis HOM05D004418 ORTHO05D005222 4.4e-68 262.7 334 51.5
Glyma.18G281000 Glycine max HOM05D004418 ORTHO05D005222 5.8e-68 262.3 344 51.2
QL02p052558 Quercus lobata HOM05D004418 ORTHO05D005222 1.7e-67 260.8 341 51.9
TAR278G0004 Trochodendron aralioides HOM05D004418 ORTHO05D005222 2.4e-66 256.9 343 52.2
MD17G1074300 Malus domestica HOM05D004418 ORTHO05D005222 3.2e-66 256.5 339 51.6
Potri.004G102200 Populus trichocarpa HOM05D004418 ORTHO05D005222 4.1e-66 256.1 357 49.6
Glyma.08G256900 Glycine max HOM05D004418 ORTHO05D005222 5.4e-66 255.8 341 49.9
CSS0011812 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 7.1e-66 255.4 348 49.4
Manes.01G108300 Manihot esculenta HOM05D004418 ORTHO05D005222 1.6e-65 254.2 282 57.1
Gohir.A07G071400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 2.7e-65 253.4 341 48.7
Sed0007454 Sechium edule HOM05D004418 ORTHO05D005222 2.7e-65 253.4 341 49.9
VMungo1383G2014 Vigna mungo HOM05D004418 ORTHO05D005222 2.7e-65 253.4 336 50.6
Haze_14129 Corylus avellana HOM05D004418 ORTHO05D005222 1.0e-64 251.5 289 55.4
COL.COLO4_16191 Corchorus olitorius HOM05D004418 ORTHO05D005222 1.7e-64 250.8 280 55.7
Duzib133G1448 Durio zibethinus HOM05D004418 ORTHO05D005222 1.7e-64 250.8 277 58.1
Gohir.D07G075900 Gossypium hirsutum HOM05D004418 ORTHO05D005222 6.6e-64 248.8 341 47.8
Gorai.001G080100 Gossypium raimondii HOM05D004418 ORTHO05D005222 2.5e-63 246.9 341 47.5
Lj1g0022779 Lotus japonicus HOM05D004418 ORTHO05D005222 2.5e-63 246.9 324 50.9
MSTRG.23562 Avicennia marina HOM05D004418 ORTHO05D005222 5.6e-63 245.7 353 48.2
ClCG11G005360 Citrullus lanatus HOM05D004418 ORTHO05D005222 7.3e-63 245.4 366 47.0
Solyc02g063030.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 7.3e-63 245.4 352 48.6
Phvul.008G020100 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 9.5e-63 245.0 336 49.1
RcHm_v2.0_Chr2g0163131 Rosa chinensis HOM05D004418 ORTHO05D005222 9.5e-63 245.0 350 48.0
CANSAT64G2567 Cannabis sativa HOM05D004418 ORTHO05D005222 3.6e-62 243.0 356 47.8
Ciclev10012140m.g Citrus clementina HOM05D004418 ORTHO05D005222 3.6e-62 243.0 375 50.9
MD09G1084800 Malus domestica HOM05D004418 ORTHO05D005222 6.2e-62 242.3 337 49.0
Dinv33929 Davidia involucrata HOM05D004418 ORTHO05D005222 8.1e-62 241.9 318 53.5
Cpa.g.sc179.25 Carica papaya HOM05D004418 ORTHO05D005222 1.4e-61 241.1 337 50.4
Oeu030758.1 Olea europaea HOM05D004418 ORTHO05D005222 2.3e-61 240.4 272 54.4
Actinidia15868 Actinidia chinensis HOM05D004418 ORTHO05D005222 3.1e-61 240.0 267 57.3
FAN14G2637 Fragaria x ananassa HOM05D004418 ORTHO05D005222 4.0e-61 239.6 350 47.7
FvH4_6g45350 Fragaria vesca HOM05D004418 ORTHO05D005222 5.2e-61 239.2 350 47.7
ClCG05G012070 Citrullus lanatus HOM05D004418 ORTHO05D005222 6.8e-61 238.8 343 48.4
FAN05G3990 Fragaria x ananassa HOM05D004418 ORTHO05D005222 6.8e-61 238.8 348 48.0
FAN02G0751 Fragaria x ananassa HOM05D004418 ORTHO05D005222 1.2e-60 238.0 348 48.0
Sopen02g014090 Solanum pennellii HOM05D004418 ORTHO05D005222 3.4e-60 236.5 348 47.4
Hma1.2p1_0550F.1_g177250 Hydrangea macrophylla HOM05D004418 ORTHO05D005222 4.4e-60 236.1 353 48.2
Psat3g190400 Pisum sativum HOM05D004418 ORTHO05D005222 4.4e-60 236.1 342 48.2
arahy.Tifrunner.gnm1.ann1.FZV4HQ Arachis hypogaea HOM05D004418 ORTHO05D005222 5.8e-60 235.7 352 47.2
arahy.Tifrunner.gnm1.ann1.I4UW8B Arachis hypogaea HOM05D004418 ORTHO05D005222 5.8e-60 235.7 352 47.2
CsaV3_5G039140 Cucumis sativus L. HOM05D004418 ORTHO05D005222 5.8e-60 235.7 346 48.0
PGSC0003DMG400024185 Solanum tuberosum HOM05D004418 ORTHO05D005222 2.9e-59 233.4 351 46.4
Atru.chr8.826 Acer truncatum HOM05D004418 ORTHO05D005222 8.4e-59 231.9 332 49.4
Aqoxy3G00366 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 8.4e-59 231.9 342 46.5
Glyma.19G045400 Glycine max HOM05D004418 ORTHO05D005222 8.4e-59 231.9 345 45.8
TPR.G4552 Trifolium pratense HOM05D004418 ORTHO05D005222 1.1e-58 231.5 344 48.5
CsaV3_3G020330 Cucumis sativus L. HOM05D004418 ORTHO05D005222 1.4e-58 231.1 340 47.6
MELO3C023762.2 Cucumis melo HOM05D004418 ORTHO05D005222 3.2e-58 229.9 340 47.6
Medtr7g018370 Medicago truncatula HOM05D004418 ORTHO05D005222 3.2e-58 229.9 316 50.6
Lalb_Chr06g0174671 Lupinus albus HOM05D004418 ORTHO05D005222 4.1e-58 229.6 367 46.6
Glyma.13G046900 Glycine max HOM05D004418 ORTHO05D005222 4.6e-57 226.1 345 46.7
Oeu052993.1 Olea europaea HOM05D004418 ORTHO05D005222 4.6e-57 226.1 270 52.2
Sabra17G0093300 Salix brachista HOM05D004418 ORTHO05D005222 4.6e-57 226.1 276 54.0
EL10Ac2g04606 Beta vulgaris HOM05D004418 ORTHO05D005222 6.0e-57 225.7 361 43.5
Nitab4.5_0008781g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 7.8e-57 225.3 345 44.9
Nitab4.5_0004118g0100 Nicotiana tabacum HOM05D004418 ORTHO05D005222 1.3e-56 224.6 343 45.2
Phvul.004G062900 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 3.0e-56 223.4 347 47.0
Nitab4.5_0000628g0180 Nicotiana tabacum HOM05D004418 ORTHO05D005222 5.1e-56 222.6 367 45.8
Sopen02g030440 Solanum pennellii HOM05D004418 ORTHO05D005222 6.6e-56 222.2 354 44.4
Lj2g0026691 Lotus japonicus HOM05D004418 ORTHO05D005222 8.6e-56 221.9 321 47.7
Eucgr.F02480 Eucalyptus grandis HOM05D004418 ORTHO05D005222 1.1e-55 221.5 336 45.8
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 1.1e-55 221.5 286 51.7
TWI75G1693 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 1.5e-55 221.1 333 47.7
Medtr6g017240 Medicago truncatula HOM05D004418 ORTHO05D005222 1.9e-55 220.7 336 45.5
VMungo0464G1669 Vigna mungo HOM05D004418 ORTHO05D005222 2.5e-55 220.3 337 47.8
Gohir.D11G168666 Gossypium hirsutum HOM05D004418 ORTHO05D005222 5.6e-55 219.2 334 47.3
CAN.G23.16 Capsicum annuum HOM05D004418 ORTHO05D005222 9.6e-55 218.4 364 44.0
CAN.G358.137 Capsicum annuum HOM05D004418 ORTHO05D005222 1.6e-54 217.6 287 50.5
Gohir.A11G162400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.1e-53 214.9 331 46.5
Solyc02g085750.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 1.1e-53 214.9 352 44.0
TPR.G32452 Trifolium pratense HOM05D004418 ORTHO05D005222 1.4e-53 214.5 328 44.8
CSS0030087 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 4.0e-53 213.0 360 45.0
Gorai.007G180200 Gossypium raimondii HOM05D004418 ORTHO05D005222 5.2e-53 212.6 334 46.7
Sed0007873 Sechium edule HOM05D004418 ORTHO05D005222 6.8e-53 212.2 344 44.2
MSTRG.3576 Avicennia marina HOM05D004418 ORTHO05D005222 1.2e-52 211.5 346 42.5
DCAR_017217 Daucus carota HOM05D004418 ORTHO05D005222 7.6e-52 208.8 345 43.2
PGR042G3608 Punica granatum HOM05D004418 ORTHO05D005222 1.3e-51 208.0 338 44.7
Hund13733 Selenicereus undatus HOM05D004418 ORTHO05D005222 2.2e-51 207.2 282 47.2
Ah.10g037550 Amaranthus hybridus HOM05D004418 ORTHO05D005222 4.9e-51 206.1 318 47.5
Psat1g012960 Pisum sativum HOM05D004418 ORTHO05D005222 2.7e-49 200.3 257 51.8
Lalb_Chr10g0092251 Lupinus albus HOM05D004418 ORTHO05D005222 4.6e-49 199.5 343 45.8
PSO017G3409 Papaver somniferum HOM05D004418 ORTHO05D005222 4.6e-49 199.5 354 42.9
PSO478G2162 Papaver somniferum HOM05D004418 ORTHO05D005222 1.0e-48 198.4 349 43.6
SGA_v2.0_scaffold33G13429 Striga asiatica HOM05D004418 ORTHO05D005222 2.3e-48 197.2 349 42.1
THA.LOC104803001 Tarenaya hassleriana HOM05D004418 ORTHO05D005222 5.1e-48 196.1 338 42.9
MBI09_g05206_MAGBIO Magnolia biondii HOM05D004418 ORTHO05D005222 1.1e-47 194.9 336 43.5
MELO3C022089.2 Cucumis melo HOM05D004418 ORTHO05D005222 9.6e-47 191.8 210 55.2
CSS0000095 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 2.1e-46 190.7 288 48.6
ECA246G2173 Erigeron canadensis HOM05D004418 ORTHO05D005222 3.6e-46 189.9 329 44.4
TWI79G1555 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 6.9e-45 185.7 362 41.4
Nitab4.5_0007207g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 2.0e-44 184.1 314 43.9
Peaxi162Scf01327g00136 Petunia axillaris HOM05D004418 ORTHO05D005222 3.4e-44 183.3 339 42.8
BraA03t10082Z Brassica rapa HOM05D004418 ORTHO05D005222 3.8e-43 179.9 364 40.7
A03p07540 Brassica napus HOM05D004418 ORTHO05D005222 8.4e-43 178.7 364 39.8
HanXRQChr12g0376561 Helianthus annuus HOM05D004418 ORTHO05D005222 3.2e-42 176.8 340 42.1
Thhalv10014096m.g Eutrema salsugineum HOM05D004418 ORTHO05D005222 4.2e-42 176.4 355 41.4
Aa31LG5G13000 Aethionema arabicum HOM05D004418 ORTHO05D005222 7.1e-42 175.6 263 45.6
AL6G26910 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 1.2e-41 174.9 371 40.7
C03p08770 Brassica napus HOM05D004418 ORTHO05D005222 1.2e-41 174.9 364 39.0
Migut.H00200 Erythranthe guttata HOM05D004418 ORTHO05D005222 1.2e-41 174.9 333 39.3
BolC3t13373H Brassica oleracea HOM05D004418 ORTHO05D005222 1.6e-41 174.5 364 39.6
BcaB01g05008 Brassica carinata HOM05D004418 ORTHO05D005222 2.7e-41 173.7 271 46.9
Sp6g28100 Schrenkiella parvula HOM05D004418 ORTHO05D005222 3.5e-41 173.3 268 48.1
A10p23020 Brassica napus HOM05D004418 ORTHO05D005222 4.6e-41 172.9 302 44.4
BraA10t44371Z Brassica rapa HOM05D004418 ORTHO05D005222 4.6e-41 172.9 302 44.4
Migut.L00303 Erythranthe guttata HOM05D004418 ORTHO05D005222 4.6e-41 172.9 324 40.4
Aa31LG11G13580 Aethionema arabicum HOM05D004418 ORTHO05D005222 1.1e-39 168.3 270 45.9
Carub.0006s1422 Capsella rubella HOM05D004418 ORTHO05D005222 1.9e-39 167.5 264 46.6
AT5G16030 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 3.3e-39 166.8 272 48.5
BolC9t58946H Brassica oleracea HOM05D004418 ORTHO05D005222 4.3e-39 166.4 299 43.1
Lj4A194T37 Lonicera japonica HOM05D004418 ORTHO05D005222 7.4e-39 165.6 263 46.8
BcaC04g18914 Brassica carinata HOM05D004418 ORTHO05D005222 2.1e-38 164.1 380 38.2
BcaNung02220 Brassica carinata HOM05D004418 ORTHO05D005222 2.1e-38 164.1 289 42.6
C09p60990 Brassica napus HOM05D004418 ORTHO05D005222 2.1e-38 164.1 299 42.8
BolC2t06735H Brassica oleracea HOM05D004418 ORTHO05D005222 2.1e-38 164.1 370 36.8
BcaB08g36881 Brassica carinata HOM05D004418 ORTHO05D005222 4.8e-38 162.9 304 43.1
CARHR197280 Cardamine hirsuta HOM05D004418 ORTHO05D005222 6.2e-38 162.5 348 39.4
BcaC03g18465 Brassica carinata HOM05D004418 ORTHO05D005222 1.1e-37 161.8 370 35.9
C02p08130 Brassica napus HOM05D004418 ORTHO05D005222 1.1e-37 161.8 370 35.9
A02p03360 Brassica napus HOM05D004418 ORTHO05D005222 2.4e-37 160.6 300 43.0
SalBow5G1629 Salvia bowleyana HOM05D004418 ORTHO05D005222 6.9e-37 159.1 327 39.1
AT3G02500 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 9.0e-37 158.7 178 54.5
BraA02t05307Z Brassica rapa HOM05D004418 ORTHO05D005222 9.0e-37 158.7 300 42.7
CARHR076500 Cardamine hirsuta HOM05D004418 ORTHO05D005222 1.2e-36 158.3 263 43.7
arahy.Tifrunner.gnm1.ann1.SB4BUV Arachis hypogaea HOM05D004418 ORTHO05D005222 7.6e-36 155.6 352 38.6
Peaxi162Scf00501g00012 Petunia axillaris HOM05D004418 ORTHO05D005222 1.1e-34 151.8 364 38.7
AL3G11860 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 1.9e-34 151.0 139 61.9
PGR004G1179 Punica granatum HOM05D004418 ORTHO05D005222 5.5e-34 149.4 306 40.2
vmacro05572 Vaccinium macrocarpon HOM05D004418 ORTHO05D005222 7.1e-34 149.1 259 42.5
Carub.0003s0161 Capsella rubella HOM05D004418 ORTHO05D005222 1.3e-30 138.3 334 35.9
Oeu052991.1 Olea europaea HOM05D004418 ORTHO05D005222 1.3e-30 138.3 118 63.6
BcaC01g04442 Brassica carinata HOM05D004418 ORTHO05D005222 3.7e-30 136.7 137 57.7
Ah.16g101950 Amaranthus hybridus HOM05D004418 ORTHO05D005222 5.8e-28 129.4 183 45.4
RcHm_v2.0_Chr4g0404491 Rosa chinensis HOM05D004418 ORTHO05D005222 2.2e-27 127.5 119 64.7
Lsat_1_v5_gn_3_80201 Lactuca sativa HOM05D004418 ORTHO05D005222 4.9e-27 126.3 207 44.0
A03p32980 Brassica napus HOM05D004418 ORTHO05D005222 3.0e-24 117.1 326 34.0
C03p40110 Brassica napus HOM05D004418 ORTHO05D005222 1.5e-23 114.8 329 34.0
BolC3t16277H Brassica oleracea HOM05D004418 ORTHO05D005222 3.3e-23 113.6 329 34.0
BraA03t12466Z Brassica rapa HOM05D004418 ORTHO05D005222 9.6e-23 112.1 329 34.3
SalBow3G3548 Salvia bowleyana HOM05D004418 ORTHO05D005222 1.3e-22 111.7 117 56.4
SalBow3G2364 Salvia bowleyana HOM05D004418 ORTHO05D005222 2.1e-22 110.9 117 56.4
arahy.Tifrunner.gnm1.ann1.554YPX Arachis hypogaea HOM05D004418 ORTHO05D005222 2.8e-22 110.5 202 42.1
BcaC01g04556 Brassica carinata HOM05D004418 ORTHO05D005222 2.8e-22 110.5 331 33.2
Sc11g0008220 Simmondsia chinensis HOM05D004418 ORTHO05D005222 1.8e-21 107.8 154 46.1
SGA_v2.0_scaffold49G18089 Striga asiatica HOM05D004418 ORTHO05D005222 3.4e-20 103.6 257 32.3
ATR0686G091 Amborella trichopoda HOM05D004418 ORTHO05D005222 3.2e-18 97.1 244 32.8
CAN.G144.13 Capsicum annuum HOM05D004418 ORTHO05D005222 2.6e-12 77.4 68 69.1
unitig_32.g11894 Utricularia gibba HOM05D004418 ORTHO05D005222 4.5e-12 76.6 67 59.7


User provided reference genes

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