Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G03898 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 3.7e-51 204.5 100 100.0
Nn3g17700 Nelumbo nucifera HOM05D005816 ORTHO05D006915 8.4e-19 97.1 117 50.4
TAR629G1032 Trochodendron aralioides HOM05D005816 ORTHO05D006915 5.4e-18 94.4 111 53.2
Thecc.03G027700 Theobroma cacao HOM05D005816 ORTHO05D006915 7.1e-18 94.0 103 54.4
Duzib251G0462 Durio zibethinus HOM05D005816 ORTHO05D006915 2.1e-17 92.4 112 48.2
Manes.06G073000 Manihot esculenta HOM05D005816 ORTHO05D006915 2.7e-17 92.0 119 47.1
Ciclev10033717m.g Citrus clementina HOM05D005816 ORTHO05D006915 3.5e-17 91.7 125 44.8
Aqoxy3G00384 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 6.0e-17 90.9 104 50.0
Hma1.2p1_0862F.1_g229870 Hydrangea macrophylla HOM05D005816 ORTHO05D006915 6.0e-17 90.9 108 50.9
COL.COLO4_22708 Corchorus olitorius HOM05D005816 ORTHO05D006915 1.3e-16 89.7 105 49.5
Thecc.02G362100 Theobroma cacao HOM05D005816 ORTHO05D006915 3.9e-16 88.2 114 46.5
Sabra08G0087500 Salix brachista HOM05D005816 ORTHO05D006915 1.9e-15 85.9 111 45.9
Gohir.D07G042900 Gossypium hirsutum HOM05D005816 ORTHO05D006915 2.5e-15 85.5 98 51.0
Gorai.001G045900 Gossypium raimondii HOM05D005816 ORTHO05D006915 4.3e-15 84.7 98 51.0
Lalb_Chr10g0099661 Lupinus albus HOM05D005816 ORTHO05D006915 4.3e-15 84.7 111 43.2
Lalb_Chr21g0313371 Lupinus albus HOM05D005816 ORTHO05D006915 4.3e-15 84.7 111 44.1
Manes.14G096700 Manihot esculenta HOM05D005816 ORTHO05D006915 5.6e-15 84.3 104 48.1
Duzib248G0754 Durio zibethinus HOM05D005816 ORTHO05D006915 7.4e-15 84.0 113 44.2
QL01p001040 Quercus lobata HOM05D005816 ORTHO05D006915 7.4e-15 84.0 117 42.7
SalBow8G0077 Salvia bowleyana HOM05D005816 ORTHO05D006915 1.3e-14 83.2 112 50.9
MELO3C005357.2 Cucumis melo HOM05D005816 ORTHO05D006915 1.6e-14 82.8 118 45.8
COL.COLO4_07860 Corchorus olitorius HOM05D005816 ORTHO05D006915 2.1e-14 82.4 111 45.0
CSS0007623 Camellia sinensis var. sinensis HOM05D005816 ORTHO05D006915 2.8e-14 82.0 104 47.1
Phvul.007G101800 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 4.8e-14 81.3 112 43.8
VMungo0720G2795 Vigna mungo HOM05D005816 ORTHO05D006915 6.2e-14 80.9 108 46.3
Glyma.10G205100 Glycine max HOM05D005816 ORTHO05D006915 8.1e-14 80.5 113 46.9
HanXRQChr16g0528861 Helianthus annuus HOM05D005816 ORTHO05D006915 1.1e-13 80.1 101 48.5
Gohir.A07G038800 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.4e-13 79.7 98 49.0
Glyma.20G185400 Glycine max HOM05D005816 ORTHO05D006915 1.8e-13 79.3 112 45.5
Potri.008G115600 Populus trichocarpa HOM05D005816 ORTHO05D006915 1.8e-13 79.3 114 43.9
PGR119G1376 Punica granatum HOM05D005816 ORTHO05D006915 1.8e-13 79.3 117 42.7
Prupe.1G304500 Prunus persica HOM05D005816 ORTHO05D006915 3.1e-13 78.6 134 44.8
Potri.010G130400 Populus trichocarpa HOM05D005816 ORTHO05D006915 5.3e-13 77.8 114 44.7
Sed0000064 Sechium edule HOM05D005816 ORTHO05D006915 5.3e-13 77.8 113 44.2
Atru.chr11.1371 Acer truncatum HOM05D005816 ORTHO05D006915 9.0e-13 77.0 125 41.6
Lsat_1_v5_gn_4_19200 Lactuca sativa HOM05D005816 ORTHO05D006915 1.5e-12 76.3 105 43.8
CiPaw.16G083700 Carya illinoinensis HOM05D005816 ORTHO05D006915 2.0e-12 75.9 115 41.7
Gohir.D13G069300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 2.0e-12 75.9 120 41.7
HanXRQChr05g0149681 Helianthus annuus HOM05D005816 ORTHO05D006915 2.0e-12 75.9 103 44.7
Lalb_Chr07g0178581 Lupinus albus HOM05D005816 ORTHO05D006915 3.4e-12 75.1 113 41.6
Nn4g23710 Nelumbo nucifera HOM05D005816 ORTHO05D006915 3.4e-12 75.1 122 43.4
Oeu024099.1 Olea europaea HOM05D005816 ORTHO05D006915 4.5e-12 74.7 106 46.2
RcHm_v2.0_Chr4g0435951 Rosa chinensis HOM05D005816 ORTHO05D006915 4.5e-12 74.7 107 41.1
Dinv36900 Davidia involucrata HOM05D005816 ORTHO05D006915 7.6e-12 73.9 74 54.1
FvH4_4g28190 Fragaria vesca HOM05D005816 ORTHO05D006915 1.3e-11 73.2 103 40.8
FAN12G1213 Fragaria x ananassa HOM05D005816 ORTHO05D006915 1.3e-11 73.2 103 40.8
Gorai.013G079400 Gossypium raimondii HOM05D005816 ORTHO05D006915 1.3e-11 73.2 120 40.0
MBI16_g06255_MAGBIO Magnolia biondii HOM05D005816 ORTHO05D006915 1.7e-11 72.8 104 43.3
TPR.G9813 Trifolium pratense HOM05D005816 ORTHO05D006915 2.2e-11 72.4 112 42.9
BcaB03g15849 Brassica carinata HOM05D005816 ORTHO05D006915 2.9e-11 72.0 117 41.9
FAN07G2890 Fragaria x ananassa HOM05D005816 ORTHO05D006915 2.9e-11 72.0 103 39.8
Gohir.A13G071300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 2.9e-11 72.0 120 39.2
Medtr8g076990 Medicago truncatula HOM05D005816 ORTHO05D006915 2.9e-11 72.0 70 57.1
Phvul.003G177600 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 2.9e-11 72.0 109 44.0
TPR.G26768 Trifolium pratense HOM05D005816 ORTHO05D006915 2.9e-11 72.0 120 40.8
Carub.0002s1536 Capsella rubella HOM05D005816 ORTHO05D006915 3.8e-11 71.6 121 38.8
Atru.chr9.746 Acer truncatum HOM05D005816 ORTHO05D006915 4.9e-11 71.2 60 60.0
Solyc05g009915.1 Solanum lycopersicum HOM05D005816 ORTHO05D006915 4.9e-11 71.2 113 41.6
BcaB05g24412 Brassica carinata HOM05D005816 ORTHO05D006915 6.5e-11 70.9 118 38.1
Thhalv10019343m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 6.5e-11 70.9 121 40.5
Thhalv10019753m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 8.4e-11 70.5 107 41.1
Manes.05G118800 Manihot esculenta HOM05D005816 ORTHO05D006915 8.4e-11 70.5 109 43.1
CARHR061620 Cardamine hirsuta HOM05D005816 ORTHO05D006915 1.1e-10 70.1 118 40.7
CiPaw.15G002700 Carya illinoinensis HOM05D005816 ORTHO05D006915 1.1e-10 70.1 87 50.6
THA.LOC104821965 Tarenaya hassleriana HOM05D005816 ORTHO05D006915 1.1e-10 70.1 112 41.1
CiPaw.16G002600 Carya illinoinensis HOM05D005816 ORTHO05D006915 1.4e-10 69.7 122 43.4
FAN17G1568 Fragaria x ananassa HOM05D005816 ORTHO05D006915 1.4e-10 69.7 104 40.4
Gohir.A11G007200 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.9e-10 69.3 109 44.0
Gohir.D11G006300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.9e-10 69.3 109 43.1
Duzib205G0672 Durio zibethinus HOM05D005816 ORTHO05D006915 3.2e-10 68.6 103 44.7
FvH4_5g12751 Fragaria vesca HOM05D005816 ORTHO05D006915 3.2e-10 68.6 106 41.5
AT1G68795 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 4.2e-10 68.2 115 40.9
AL2G33800 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 5.5e-10 67.8 109 43.1
ClCG01G005730 Citrullus lanatus HOM05D005816 ORTHO05D006915 5.5e-10 67.8 109 41.3
FAN18G0325 Fragaria x ananassa HOM05D005816 ORTHO05D006915 5.5e-10 67.8 106 42.5
Gorai.007G007600 Gossypium raimondii HOM05D005816 ORTHO05D006915 5.5e-10 67.8 67 56.7
Oeu044626.1 Olea europaea HOM05D005816 ORTHO05D006915 5.5e-10 67.8 107 45.8
Sopen05g005720 Solanum pennellii HOM05D005816 ORTHO05D006915 5.5e-10 67.8 65 53.8
PGSC0003DMG400000830 Solanum tuberosum HOM05D005816 ORTHO05D006915 5.5e-10 67.8 111 41.4
Migut.L01100 Erythranthe guttata HOM05D005816 ORTHO05D006915 7.1e-10 67.4 72 52.8
Eucgr.G02356 Eucalyptus grandis HOM05D005816 ORTHO05D006915 7.1e-10 67.4 61 59.0
Gohir.D02G116175 Gossypium hirsutum HOM05D005816 ORTHO05D006915 7.1e-10 67.4 95 42.1
AL2G27750 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 9.3e-10 67.0 121 38.8
CiPaw.15G126000 Carya illinoinensis HOM05D005816 ORTHO05D006915 9.3e-10 67.0 117 37.6
BcaC08g46328 Brassica carinata HOM05D005816 ORTHO05D006915 1.2e-09 66.6 121 40.5
BolC6t39316H Brassica oleracea HOM05D005816 ORTHO05D006915 1.2e-09 66.6 121 40.5
Cc11_g10680 Coffea canephora HOM05D005816 ORTHO05D006915 1.2e-09 66.6 72 59.7
Sp5g29165 Schrenkiella parvula HOM05D005816 ORTHO05D006915 1.2e-09 66.6 105 41.0
Potri.012G059600 Populus trichocarpa HOM05D005816 ORTHO05D006915 1.6e-09 66.2 104 41.3
PGSC0003DMG400005703 Solanum tuberosum HOM05D005816 ORTHO05D006915 1.6e-09 66.2 74 54.1
Migut.E00293 Erythranthe guttata HOM05D005816 ORTHO05D006915 2.1e-09 65.9 61 60.7
Lalb_Chr13g0302361 Lupinus albus HOM05D005816 ORTHO05D006915 2.1e-09 65.9 108 42.6
Medtr1g093800 Medicago truncatula HOM05D005816 ORTHO05D006915 2.1e-09 65.9 110 40.0
Glyma.17G121800 Glycine max HOM05D005816 ORTHO05D006915 2.7e-09 65.5 113 41.6
PGR044G2006 Punica granatum HOM05D005816 ORTHO05D006915 2.7e-09 65.5 105 41.0
AT1G73965 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 3.5e-09 65.1 111 40.5
Oeu041876.1 Olea europaea HOM05D005816 ORTHO05D006915 4.6e-09 64.7 114 41.2
Prupe.5G216700 Prunus persica HOM05D005816 ORTHO05D006915 4.6e-09 64.7 82 47.6
Gohir.A03G097050 Gossypium hirsutum HOM05D005816 ORTHO05D006915 6.0e-09 64.3 95 41.1
Sopen03g038660 Solanum pennellii HOM05D005816 ORTHO05D006915 6.0e-09 64.3 72 47.2
BolC6t39843H Brassica oleracea HOM05D005816 ORTHO05D006915 7.9e-09 63.9 59 54.2
Carub.0002s2074 Capsella rubella HOM05D005816 ORTHO05D006915 7.9e-09 63.9 109 42.2
Cpa.g.sc13.61 Carica papaya HOM05D005816 ORTHO05D006915 7.9e-09 63.9 59 55.9
Aa31LG4G4260 Aethionema arabicum HOM05D005816 ORTHO05D006915 1.0e-08 63.5 61 57.4
MELO3C017284.2 Cucumis melo HOM05D005816 ORTHO05D006915 1.3e-08 63.2 71 50.7
VMungo1215G1388 Vigna mungo HOM05D005816 ORTHO05D006915 1.3e-08 63.2 104 41.3
A07p39820 Brassica napus HOM05D005816 ORTHO05D006915 1.8e-08 62.8 107 41.1
BraA07t31528Z Brassica rapa HOM05D005816 ORTHO05D006915 1.8e-08 62.8 107 41.1
Sp5g23900 Schrenkiella parvula HOM05D005816 ORTHO05D006915 1.8e-08 62.8 118 38.1
Psat4g043720 Pisum sativum HOM05D005816 ORTHO05D006915 3.0e-08 62.0 107 37.4
C06p48080 Brassica napus HOM05D005816 ORTHO05D006915 5.1e-08 61.2 59 52.5
Lj4g0025770 Lotus japonicus HOM05D005816 ORTHO05D006915 5.1e-08 61.2 101 39.6
BcaC03g14990 Brassica carinata HOM05D005816 ORTHO05D006915 8.7e-08 60.5 64 50.0
CARHR067080 Cardamine hirsuta HOM05D005816 ORTHO05D006915 1.1e-07 60.1 115 38.3
Lsat_1_v5_gn_4_112260 Lactuca sativa HOM05D005816 ORTHO05D006915 1.1e-07 60.1 78 42.3
MD06G1210600 Malus domestica HOM05D005816 ORTHO05D006915 1.1e-07 60.1 102 41.2
Glyma.05G013600 Glycine max HOM05D005816 ORTHO05D006915 1.5e-07 59.7 117 40.2
SGA_v2.0_scaffold59G20629 Striga asiatica HOM05D005816 ORTHO05D006915 1.5e-07 59.7 64 48.4
BcaC08g46825 Brassica carinata HOM05D005816 ORTHO05D006915 3.3e-07 58.5 59 49.2
Aa31sc79G90 Aethionema arabicum HOM05D005816 ORTHO05D006915 4.3e-07 58.2 107 38.3
MD14G1221300 Malus domestica HOM05D005816 ORTHO05D006915 4.3e-07 58.2 119 38.7
Sed0012991 Sechium edule HOM05D005816 ORTHO05D006915 4.3e-07 58.2 62 50.0
HanXRQChr16g0502081 Helianthus annuus HOM05D005816 ORTHO05D006915 5.7e-07 57.8 76 44.7
Lsat_1_v5_gn_3_58221 Lactuca sativa HOM05D005816 ORTHO05D006915 5.7e-07 57.8 109 40.4
Eucgr.B00694 Eucalyptus grandis HOM05D005816 ORTHO05D006915 7.4e-07 57.4 67 46.3
Manes.01G021100 Manihot esculenta HOM05D005816 ORTHO05D006915 7.4e-07 57.4 81 39.5
Nn3g17389 Nelumbo nucifera HOM05D007541 ORTHO05D009404 7.4e-07 57.4 87 42.5
ATR0681G007 Amborella trichopoda HOM05D005816 ORTHO05D006915 3.7e-06 55.1 43 62.8
AL1G39130 Arabidopsis lyrata HOM05D007541 ORTHO05D009404 6.2e-06 54.3 42 61.9
PSO017G0024 Papaver somniferum HOM05D005816 ORTHO05D006915 6.2e-06 54.3 26 88.5


User provided reference genes

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