Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G03865 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 2.2e-117 425.6 217 100.0
Ciclev10033020m.g Citrus clementina HOM05D004290 ORTHO05D005025 2.7e-54 216.1 134 70.9
CiPaw.05G172800 Carya illinoinensis HOM05D004290 ORTHO05D005025 1.3e-53 213.8 138 67.4
Nn4g23673 Nelumbo nucifera HOM05D004290 ORTHO05D005025 2.3e-53 213.0 139 66.2
CiPaw.05G172700 Carya illinoinensis HOM05D004290 ORTHO05D005025 2.5e-52 209.5 138 65.2
CANSAT64G1327 Cannabis sativa HOM05D004290 ORTHO05D005025 7.3e-52 208.0 133 68.4
Aa31sc79G10 Aethionema arabicum HOM05D004290 ORTHO05D005025 3.6e-51 205.7 140 64.3
PSO478G2631 Papaver somniferum HOM05D004290 ORTHO05D005025 3.6e-51 205.7 138 67.4
RcHm_v2.0_Chr4g0436191 Rosa chinensis HOM05D004290 ORTHO05D005025 8.1e-51 204.5 136 64.0
FvH4_4g28340 Fragaria vesca HOM05D004290 ORTHO05D005025 1.1e-50 204.1 136 64.0
FAN22G0640 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.1e-50 204.1 136 64.0
Manes.06G074500 Manihot esculenta HOM05D004290 ORTHO05D005025 1.1e-50 204.1 142 62.7
Thecc.02G363400 Theobroma cacao HOM05D004290 ORTHO05D005025 1.1e-50 204.1 136 64.7
Lj3A1022T62 Lonicera japonica HOM05D004290 ORTHO05D005025 1.4e-50 203.8 136 65.4
AT1G68760 Arabidopsis thaliana HOM05D004290 ORTHO05D005025 2.4e-50 203.0 136 65.4
FAN12G2228 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.4e-50 203.0 136 63.2
ATR1147G043 Amborella trichopoda HOM05D004290 ORTHO05D005025 3.1e-50 202.6 140 62.1
FAN17G1675 Fragaria x ananassa HOM05D004290 ORTHO05D005025 9.0e-50 201.1 142 61.3
QL03p037189 Quercus lobata HOM05D004290 ORTHO05D005025 9.0e-50 201.1 135 63.7
Sed0004732 Sechium edule HOM05D004290 ORTHO05D005025 1.2e-49 200.7 138 63.8
Sabra08G0086600 Salix brachista HOM05D004290 ORTHO05D005025 1.5e-49 200.3 144 58.3
MELO3C005349.2 Cucumis melo HOM05D004290 ORTHO05D005025 2.0e-49 199.9 140 64.3
Haze_11793 Corylus avellana HOM05D004290 ORTHO05D005025 2.6e-49 199.5 150 60.7
CARHR061580 Cardamine hirsuta HOM05D004290 ORTHO05D005025 7.6e-49 198.0 136 62.5
Potri.008G114400 Populus trichocarpa HOM05D004290 ORTHO05D005025 7.6e-49 198.0 146 62.3
GSVIVG01011978001 Vitis vinifera HOM05D004290 ORTHO05D005025 9.9e-49 197.6 136 65.4
EL10Ac6g14527 Beta vulgaris HOM05D004290 ORTHO05D005025 1.3e-48 197.2 137 61.3
Cfa008781 Carpinus fangiana HOM05D004290 ORTHO05D005025 1.7e-48 196.8 148 60.8
Potri.008G114300 Populus trichocarpa HOM05D004290 ORTHO05D005025 2.2e-48 196.4 144 58.3
Aqoxy3G03864 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 2.9e-48 196.1 136 65.4
AL2G27690 Arabidopsis lyrata HOM05D004290 ORTHO05D005025 2.9e-48 196.1 141 61.0
Duzib251G0274 Durio zibethinus HOM05D004290 ORTHO05D005025 2.9e-48 196.1 134 61.9
QL03p036461 Quercus lobata HOM05D004290 ORTHO05D005025 2.9e-48 196.1 133 62.4
COL.COLO4_07852 Corchorus olitorius HOM05D004290 ORTHO05D005025 3.8e-48 195.7 135 63.7
CsaV3_5G028890 Cucumis sativus L. HOM05D004290 ORTHO05D005025 4.9e-48 195.3 139 61.9
SalBow8G1203 Salvia bowleyana HOM05D004290 ORTHO05D005025 6.4e-48 194.9 136 61.8
SalBow8G5193 Salvia bowleyana HOM05D004290 ORTHO05D005025 6.4e-48 194.9 136 61.8
Carub.0002s1532 Capsella rubella HOM05D004290 ORTHO05D005025 1.4e-47 193.7 136 63.2
CsaV3_5G033840 Cucumis sativus L. HOM05D004290 ORTHO05D005025 1.9e-47 193.4 136 58.8
MD13G1049100 Malus domestica HOM05D004290 ORTHO05D005025 2.4e-47 193.0 137 62.8
BcaB05g24409 Brassica carinata HOM05D004290 ORTHO05D005025 3.2e-47 192.6 135 61.5
MBI10_g35795_MAGBIO Magnolia biondii HOM05D004290 ORTHO05D005025 3.2e-47 192.6 131 64.1
BraA02t06593Z Brassica rapa HOM05D004290 ORTHO05D005025 4.2e-47 192.2 136 62.5
Cc11_g10800 Coffea canephora HOM05D004290 ORTHO05D005025 4.2e-47 192.2 136 61.0
Sed0009817 Sechium edule HOM05D004290 ORTHO05D005025 4.2e-47 192.2 134 59.0
FvH4_4g28310 Fragaria vesca HOM05D004290 ORTHO05D005025 7.1e-47 191.4 134 61.9
FAN12G0523 Fragaria x ananassa HOM05D004290 ORTHO05D005025 7.1e-47 191.4 134 61.9
RcHm_v2.0_Chr6g0244161 Rosa chinensis HOM05D004290 ORTHO05D005025 7.1e-47 191.4 135 63.7
Gohir.A13G071200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 9.3e-47 191.0 136 61.8
A02p15320 Brassica napus HOM05D004290 ORTHO05D005025 1.6e-46 190.3 136 61.8
C02p25170 Brassica napus HOM05D004290 ORTHO05D005025 1.6e-46 190.3 136 61.8
Prupe.1G302800 Prunus persica HOM05D004290 ORTHO05D005025 1.6e-46 190.3 138 61.6
PGR102G2310 Punica granatum HOM05D004290 ORTHO05D005025 1.6e-46 190.3 143 60.8
Sp5g23870 Schrenkiella parvula HOM05D004290 ORTHO05D005025 2.1e-46 189.9 136 58.8
Hund05546 Selenicereus undatus HOM05D004290 ORTHO05D005025 2.1e-46 189.9 134 61.2
ClCG00G001430 Citrullus lanatus HOM05D004290 ORTHO05D005025 2.7e-46 189.5 153 53.6
ClCG05G023160 Citrullus lanatus HOM05D004290 ORTHO05D005025 2.7e-46 189.5 153 53.6
RcHm_v2.0_Chr2g0142071 Rosa chinensis HOM05D004290 ORTHO05D005025 2.7e-46 189.5 133 62.4
RcHm_v2.0_Chr2g0142081 Rosa chinensis HOM05D004290 ORTHO05D005025 2.7e-46 189.5 133 62.4
RcHm_v2.0_Chr2g0142111 Rosa chinensis HOM05D004290 ORTHO05D005025 2.7e-46 189.5 133 62.4
C04p37630 Brassica napus HOM05D004290 ORTHO05D005025 3.5e-46 189.1 136 61.8
Cc11_g10790 Coffea canephora HOM05D004290 ORTHO05D005025 3.5e-46 189.1 136 59.6
Gohir.D13G069200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 3.5e-46 189.1 136 60.3
Gorai.013G079300 Gossypium raimondii HOM05D004290 ORTHO05D005025 3.5e-46 189.1 136 60.3
THA.LOC104821971 Tarenaya hassleriana HOM05D004290 ORTHO05D005025 3.5e-46 189.1 140 57.9
MELO3C012202.2 Cucumis melo HOM05D004290 ORTHO05D005025 4.6e-46 188.7 202 45.0
Nitab4.5_0001178g0080 Nicotiana tabacum HOM05D004290 ORTHO05D005025 4.6e-46 188.7 153 56.9
FvH4_6g24180 Fragaria vesca HOM05D004290 ORTHO05D005025 6.0e-46 188.3 138 58.0
FAN14G4265 Fragaria x ananassa HOM05D004290 ORTHO05D005025 6.0e-46 188.3 138 58.0
Sc04g0006830 Simmondsia chinensis HOM05D004290 ORTHO05D005025 6.0e-46 188.3 136 60.3
Eucgr.B03066 Eucalyptus grandis HOM05D004290 ORTHO05D005025 7.9e-46 188.0 136 60.3
Nitab4.5_0013408g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 1.0e-45 187.6 136 61.8
RcHm_v2.0_Chr4g0436181 Rosa chinensis HOM05D004290 ORTHO05D005025 1.0e-45 187.6 134 62.7
TWI31G0716 Tripterygium wilfordii HOM05D004290 ORTHO05D005025 1.0e-45 187.6 137 60.6
BolC2t08596H Brassica oleracea HOM05D004290 ORTHO05D005025 1.3e-45 187.2 136 61.0
HanXRQChr08g0214461 Helianthus annuus HOM05D004290 ORTHO05D005025 1.8e-45 186.8 134 59.0
RcHm_v2.0_Chr2g0142121 Rosa chinensis HOM05D004290 ORTHO05D005025 1.8e-45 186.8 133 60.9
FAN09G0247 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.3e-45 186.4 138 58.0
arahy.Tifrunner.gnm1.ann1.IBNT6Z Arachis hypogaea HOM05D004290 ORTHO05D005025 3.0e-45 186.0 142 57.0
arahy.Tifrunner.gnm1.ann1.U655LF Arachis hypogaea HOM05D004290 ORTHO05D005025 3.0e-45 186.0 142 57.0
ClCG01G005800 Citrullus lanatus HOM05D004290 ORTHO05D005025 5.1e-45 185.3 208 47.1
Migut.L01112 Erythranthe guttata HOM05D004290 ORTHO05D005025 5.1e-45 185.3 144 58.3
MD13G1048900 Malus domestica HOM05D004290 ORTHO05D005025 5.1e-45 185.3 137 58.4
DCAR_023699 Daucus carota HOM05D004290 ORTHO05D005025 8.7e-45 184.5 144 54.9
DCAR_026707 Daucus carota HOM05D004290 ORTHO05D005025 8.7e-45 184.5 142 58.5
Solyc05g010015.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 8.7e-45 184.5 144 59.7
Dinv16527 Davidia involucrata HOM05D004290 ORTHO05D005025 1.5e-44 183.7 129 62.8
Prupe.1G303000 Prunus persica HOM05D004290 ORTHO05D005025 1.5e-44 183.7 141 57.4
MSTRG.7697 Avicennia marina HOM05D004290 ORTHO05D005025 2.5e-44 183.0 142 57.0
Thhalv10019297m.g Eutrema salsugineum HOM05D004290 ORTHO05D005025 2.5e-44 183.0 136 59.6
FAN09G2488 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.3e-44 182.6 139 58.3
FAN07G1902 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.3e-44 182.2 135 60.0
Ah.02g127350 Amaranthus hybridus HOM05D004290 ORTHO05D005025 7.4e-44 181.4 151 53.6
FAN12G2396 Fragaria x ananassa HOM05D004290 ORTHO05D005025 7.4e-44 181.4 135 59.3
FvH4_4g28300 Fragaria vesca HOM05D004290 ORTHO05D005025 1.3e-43 180.6 135 59.3
DCAR_017507 Daucus carota HOM05D004290 ORTHO05D005025 2.1e-43 179.9 138 54.3
DCAR_026708 Daucus carota HOM05D004290 ORTHO05D005025 2.1e-43 179.9 138 54.3
Sopen05g005830 Solanum pennellii HOM05D004290 ORTHO05D005025 2.1e-43 179.9 153 54.9
Dinv05808 Davidia involucrata HOM05D000436 ORTHO05D005025 3.6e-43 179.1 128 60.2
MD16G1050200 Malus domestica HOM05D004290 ORTHO05D005025 3.6e-43 179.1 137 58.4
SGA_v2.0_scaffold14G06802 Striga asiatica HOM05D004290 ORTHO05D005025 4.8e-43 178.7 140 58.6
ClCG05G023170 Citrullus lanatus HOM05D004290 ORTHO05D005025 6.2e-43 178.3 149 50.3
Glyma.01G090900 Glycine max HOM05D004290 ORTHO05D005025 6.2e-43 178.3 140 57.1
MD16G1050100 Malus domestica HOM05D004290 ORTHO05D005025 1.1e-42 177.6 136 58.8
Prupe.1G302900 Prunus persica HOM05D004290 ORTHO05D005025 1.1e-42 177.6 147 55.8
Ca_19617_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 1.8e-42 176.8 143 55.2
Ca_30768_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 1.8e-42 176.8 143 55.2
Peaxi162Scf00118g01310 Petunia axillaris HOM05D004290 ORTHO05D005025 1.8e-42 176.8 144 54.2
Psat2g074600 Pisum sativum HOM05D004290 ORTHO05D005025 3.1e-42 176.0 143 53.1
AUR62007751 Chenopodium quinoa HOM05D004290 ORTHO05D005025 4.0e-42 175.6 150 53.3
Lj2g0025619 Lotus japonicus HOM05D004290 ORTHO05D005025 5.3e-42 175.3 142 55.6
PGSC0003DMG400030259 Solanum tuberosum HOM05D004290 ORTHO05D005025 5.3e-42 175.3 136 57.4
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 6.9e-42 174.9 136 56.6
BcaC03g14984 Brassica carinata HOM05D004290 ORTHO05D005025 9.0e-42 174.5 135 57.8
SGA_v2.0_scaffold14G06801 Striga asiatica HOM05D004290 ORTHO05D005025 9.0e-42 174.5 140 57.1
RcHm_v2.0_Chr4g0436151 Rosa chinensis HOM05D004290 ORTHO05D005025 5.8e-41 171.8 135 60.0
AUR62002942 Chenopodium quinoa HOM05D004290 ORTHO05D005025 9.9e-41 171.0 152 53.9
ECA233G1907 Erigeron canadensis HOM05D004290 ORTHO05D005025 9.9e-41 171.0 134 55.2
Phvul.003G024900 Phaseolus vulgaris HOM05D004290 ORTHO05D005025 9.9e-41 171.0 133 56.4
HanXRQChr16g0528791 Helianthus annuus HOM05D004290 ORTHO05D005025 1.3e-40 170.6 137 56.9
TPR.G33571 Trifolium pratense HOM05D004290 ORTHO05D005025 1.7e-40 170.2 146 55.5
ECA234G2024 Erigeron canadensis HOM05D004290 ORTHO05D005025 2.2e-40 169.9 137 56.2
Lsat_1_v5_gn_8_37520 Lactuca sativa HOM05D004290 ORTHO05D005025 2.2e-40 169.9 129 56.6
Lalb_Chr04g0255051 Lupinus albus HOM05D004290 ORTHO05D005025 3.8e-40 169.1 178 48.9
HPP92_021836 Vanilla planifolia HOM05D004290 ORTHO05D005025 4.9e-40 168.7 137 55.5
Pp3c20_17780 Physcomitrium patens HOM05D004290 ORTHO05D005025 6.4e-40 168.3 132 53.8
CSS0026618 Camellia sinensis var. sinensis HOM05D004290 ORTHO05D005025 2.4e-39 166.4 144 55.6
Medtr5g062660 Medicago truncatula HOM05D004290 ORTHO05D005025 4.2e-39 165.6 139 54.7
Prupe.1G303100 Prunus persica HOM05D004290 ORTHO05D005025 9.3e-39 164.5 137 56.9
HanXRQChr16g0528801 Helianthus annuus HOM05D004290 ORTHO05D005025 2.7e-38 162.9 172 48.3
SalBow8G2020 Salvia bowleyana HOM05D004290 ORTHO05D005025 3.5e-38 162.5 136 55.1
Lsat_1_v5_gn_4_17281 Lactuca sativa HOM05D004290 ORTHO05D005025 1.0e-37 161.0 137 54.7
SalBow8G3034 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.0e-37 161.0 159 45.9
AagrBONN_evm.TU.Sc2ySwM_344.2294 Anthoceros agrestis HOM05D004290 ORTHO05D005025 1.3e-37 160.6 145 47.6
CDE10G0275 Ceratophyllum demersum HOM05D004290 ORTHO05D005025 1.3e-37 160.6 137 54.7
Prupe.1G300800 Prunus persica HOM05D004290 ORTHO05D005025 2.3e-37 159.8 135 56.3
Mapoly0059s0094 Marchantia polymorpha HOM05D004290 ORTHO05D005025 3.0e-37 159.5 148 45.3
unitig_744.g24286 Utricularia gibba HOM05D004290 ORTHO05D005025 6.7e-37 158.3 132 53.0
FAN22G2200 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.3e-36 156.0 199 41.2
Sopen03g007670 Solanum pennellii HOM05D004290 ORTHO05D005025 3.3e-36 156.0 136 52.2
Oeu044394.1 Olea europaea HOM05D004290 ORTHO05D005025 4.3e-36 155.6 133 56.4
Peaxi162Scf00367g00519 Petunia axillaris HOM05D004290 ORTHO05D005025 2.8e-35 152.9 153 51.6
CBR_g26184 Chara braunii HOM05D004290 ORTHO05D005025 6.2e-35 151.8 137 48.2
QL03p036408 Quercus lobata HOM05D004290 ORTHO05D005025 3.1e-34 149.4 96 64.6
Actinidia14836 Actinidia chinensis HOM05D000436 ORTHO05D000678 1.5e-33 147.1 112 61.6
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 1.4e-31 140.6 95 60.0
ATR1147G035 Amborella trichopoda HOM05D004290 ORTHO05D005025 5.5e-31 138.7 147 44.2
MSTRG.13496 Avicennia marina HOM05D004290 ORTHO05D005025 7.1e-31 138.3 138 48.6
CAN.G184.70 Capsicum annuum HOM05D004290 ORTHO05D005025 3.5e-30 136.0 113 55.8
Cre03.g184400 Chlamydomonas reinhardtii HOM05D004290 ORTHO05D005025 3.0e-29 132.9 134 47.0
FvH4_4g28280 Fragaria vesca HOM05D004290 ORTHO05D005025 5.1e-29 132.1 135 48.1
FAN12G1909 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.1e-28 131.0 135 46.7
Peaxi162Scf00367g00520 Petunia axillaris HOM05D004290 ORTHO05D005025 2.0e-25 120.2 126 50.0
Solyc03g150121.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 1.1e-23 114.4 103 58.3
MCO10G139 Micromonas commoda HOM05D004290 ORTHO05D005025 7.9e-22 108.2 131 42.7
Nitab4.5_0005210g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 2.8e-19 99.8 126 40.5
Rhsim09G0114000 Rhododendron simsii HOM05D000436 ORTHO05D000678 1.1e-18 97.8 75 61.3
PRCOL_00005217 Prasinoderma coloniale HOM05D004290 ORTHO05D005025 1.2e-17 94.4 128 39.1
Aqoxy3G02627 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 3.4e-17 92.8 71 49.3
Prupe.1G303300 Prunus persica HOM05D004290 ORTHO05D005025 1.3e-16 90.9 103 45.6
Oeu018290.1 Olea europaea HOM05D004290 ORTHO05D005025 7.2e-15 85.1 51 60.8
RcHm_v2.0_Chr2g0142051 Rosa chinensis HOM05D004290 ORTHO05D005025 7.2e-15 85.1 50 64.0
RcHm_v2.0_Chr2g0142061 Rosa chinensis HOM05D004290 ORTHO05D005025 1.0e-13 81.3 64 60.9
vmacro10513 Vaccinium macrocarpon HOM05D004290 ORTHO05D005025 1.0e-13 81.3 64 60.9
FAN02G2314 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.4e-13 80.9 67 59.7
MD13G1048800 Malus domestica HOM05D004290 ORTHO05D005025 6.7e-13 78.6 62 59.7
Sopen03g019130 Solanum pennellii HOM05D006181 ORTHO05D008560 3.3e-12 76.3 64 57.8
TAR629G2250 Trochodendron aralioides HOM05D004290 ORTHO05D005025 8.2e-11 71.6 39 64.1


User provided reference genes

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