Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G03864 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 8.4e-80 300.4 142 100.0
Aa31sc79G10 Aethionema arabicum HOM05D004290 ORTHO05D005025 1.6e-59 233.0 137 79.6
CANSAT64G1327 Cannabis sativa HOM05D004290 ORTHO05D005025 1.4e-58 229.9 135 78.5
QL03p037189 Quercus lobata HOM05D004290 ORTHO05D005025 1.4e-58 229.9 138 75.4
Nn4g23673 Nelumbo nucifera HOM05D004290 ORTHO05D005025 6.9e-58 227.6 137 77.4
Ciclev10033020m.g Citrus clementina HOM05D004290 ORTHO05D005025 1.2e-57 226.9 139 75.5
CiPaw.05G172700 Carya illinoinensis HOM05D004290 ORTHO05D005025 3.4e-57 225.3 138 75.4
CiPaw.05G172800 Carya illinoinensis HOM05D004290 ORTHO05D005025 5.9e-57 224.6 138 75.4
RcHm_v2.0_Chr4g0436191 Rosa chinensis HOM05D004290 ORTHO05D005025 1.0e-56 223.8 138 73.2
Thecc.02G363400 Theobroma cacao HOM05D004290 ORTHO05D005025 5.0e-56 221.5 139 74.1
Manes.06G074500 Manihot esculenta HOM05D004290 ORTHO05D005025 6.5e-56 221.1 139 74.1
Potri.008G114300 Populus trichocarpa HOM05D004290 ORTHO05D005025 6.5e-56 221.1 140 73.6
Haze_11793 Corylus avellana HOM05D004290 ORTHO05D005025 3.2e-55 218.8 148 71.6
FAN12G2228 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.2e-55 218.8 137 72.3
GSVIVG01011978001 Vitis vinifera HOM05D004290 ORTHO05D005025 5.5e-55 218.0 139 74.8
MELO3C005349.2 Cucumis melo HOM05D004290 ORTHO05D005025 9.4e-55 217.2 141 73.8
FvH4_4g28340 Fragaria vesca HOM05D004290 ORTHO05D005025 9.4e-55 217.2 137 71.5
FAN22G0640 Fragaria x ananassa HOM05D004290 ORTHO05D005025 9.4e-55 217.2 137 71.5
Sabra08G0086600 Salix brachista HOM05D004290 ORTHO05D005025 9.4e-55 217.2 136 74.3
BcaB05g24409 Brassica carinata HOM05D004290 ORTHO05D005025 1.6e-54 216.5 138 73.2
CARHR061580 Cardamine hirsuta HOM05D004290 ORTHO05D005025 1.6e-54 216.5 142 69.7
Duzib251G0274 Durio zibethinus HOM05D004290 ORTHO05D005025 2.1e-54 216.1 138 73.2
Hund05546 Selenicereus undatus HOM05D004290 ORTHO05D005025 2.1e-54 216.1 138 72.5
FAN17G1675 Fragaria x ananassa HOM05D004290 ORTHO05D005025 7.9e-54 214.2 137 70.8
Sed0004732 Sechium edule HOM05D004290 ORTHO05D005025 7.9e-54 214.2 141 72.3
BraA02t06593Z Brassica rapa HOM05D004290 ORTHO05D005025 1.4e-53 213.4 139 72.7
Cfa008781 Carpinus fangiana HOM05D004290 ORTHO05D005025 1.8e-53 213.0 148 69.6
arahy.Tifrunner.gnm1.ann1.IBNT6Z Arachis hypogaea HOM05D004290 ORTHO05D005025 2.3e-53 212.6 140 72.1
arahy.Tifrunner.gnm1.ann1.U655LF Arachis hypogaea HOM05D004290 ORTHO05D005025 2.3e-53 212.6 140 72.1
A02p15320 Brassica napus HOM05D004290 ORTHO05D005025 2.3e-53 212.6 136 74.3
C02p25170 Brassica napus HOM05D004290 ORTHO05D005025 2.3e-53 212.6 139 72.7
CsaV3_5G028890 Cucumis sativus L. HOM05D004290 ORTHO05D005025 2.3e-53 212.6 141 70.9
MD13G1049100 Malus domestica HOM05D004290 ORTHO05D005025 2.3e-53 212.6 137 74.5
QL03p036461 Quercus lobata HOM05D004290 ORTHO05D005025 2.3e-53 212.6 134 71.6
AT1G68760 Arabidopsis thaliana HOM05D004290 ORTHO05D005025 5.1e-53 211.5 138 68.8
Lj3A1022T62 Lonicera japonica HOM05D004290 ORTHO05D005025 5.1e-53 211.5 140 72.1
Sp5g23870 Schrenkiella parvula HOM05D004290 ORTHO05D005025 5.1e-53 211.5 136 72.1
EL10Ac6g14527 Beta vulgaris HOM05D004290 ORTHO05D005025 8.8e-53 210.7 137 70.1
ClCG01G005800 Citrullus lanatus HOM05D004290 ORTHO05D005025 8.8e-53 210.7 176 60.8
Prupe.1G302800 Prunus persica HOM05D004290 ORTHO05D005025 1.1e-52 210.3 140 71.4
Thhalv10019297m.g Eutrema salsugineum HOM05D004290 ORTHO05D005025 1.5e-52 209.9 137 73.0
BolC2t08596H Brassica oleracea HOM05D004290 ORTHO05D005025 2.0e-52 209.5 139 71.9
C04p37630 Brassica napus HOM05D004290 ORTHO05D005025 2.5e-52 209.1 139 71.9
Eucgr.B03066 Eucalyptus grandis HOM05D004290 ORTHO05D005025 4.3e-52 208.4 137 71.5
Ah.02g127350 Amaranthus hybridus HOM05D004290 ORTHO05D005025 7.4e-52 207.6 134 70.9
COL.COLO4_07852 Corchorus olitorius HOM05D004290 ORTHO05D005025 7.4e-52 207.6 129 76.0
Nitab4.5_0001178g0080 Nicotiana tabacum HOM05D004290 ORTHO05D005025 7.4e-52 207.6 136 70.6
Nitab4.5_0013408g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 1.3e-51 206.8 136 70.6
AL2G27690 Arabidopsis lyrata HOM05D004290 ORTHO05D005025 2.8e-51 205.7 139 66.2
Cc11_g10800 Coffea canephora HOM05D004290 ORTHO05D005025 4.8e-51 204.9 137 70.1
Migut.L01112 Erythranthe guttata HOM05D004290 ORTHO05D005025 6.3e-51 204.5 138 70.3
PSO478G2631 Papaver somniferum HOM05D004290 ORTHO05D005025 6.3e-51 204.5 140 69.3
Sed0009817 Sechium edule HOM05D004290 ORTHO05D005025 6.3e-51 204.5 136 66.9
TWI31G0716 Tripterygium wilfordii HOM05D004290 ORTHO05D005025 6.3e-51 204.5 138 71.7
THA.LOC104821971 Tarenaya hassleriana HOM05D004290 ORTHO05D005025 8.2e-51 204.1 141 66.7
Dinv16527 Davidia involucrata HOM05D004290 ORTHO05D005025 1.8e-50 203.0 134 70.9
Solyc05g010015.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 2.4e-50 202.6 136 69.1
CsaV3_5G033840 Cucumis sativus L. HOM05D004290 ORTHO05D005025 3.1e-50 202.2 136 65.4
Carub.0002s1532 Capsella rubella HOM05D004290 ORTHO05D005025 5.3e-50 201.4 138 65.9
ClCG00G001430 Citrullus lanatus HOM05D004290 ORTHO05D005025 5.3e-50 201.4 136 64.7
ClCG05G023160 Citrullus lanatus HOM05D004290 ORTHO05D005025 5.3e-50 201.4 136 64.7
Lj2g0025619 Lotus japonicus HOM05D004290 ORTHO05D005025 9.1e-50 200.7 140 70.0
PGR102G2310 Punica granatum HOM05D004290 ORTHO05D005025 9.1e-50 200.7 139 70.5
SalBow8G1203 Salvia bowleyana HOM05D004290 ORTHO05D005025 9.1e-50 200.7 135 69.6
SalBow8G5193 Salvia bowleyana HOM05D004290 ORTHO05D005025 9.1e-50 200.7 135 69.6
MELO3C012202.2 Cucumis melo HOM05D004290 ORTHO05D005025 1.2e-49 200.3 136 64.0
Sc04g0006830 Simmondsia chinensis HOM05D004290 ORTHO05D005025 1.5e-49 199.9 136 68.4
HanXRQChr08g0214461 Helianthus annuus HOM05D004290 ORTHO05D005025 2.0e-49 199.5 140 64.3
Sopen05g005830 Solanum pennellii HOM05D004290 ORTHO05D005025 2.0e-49 199.5 136 67.6
RcHm_v2.0_Chr2g0142071 Rosa chinensis HOM05D004290 ORTHO05D005025 2.6e-49 199.1 135 68.1
RcHm_v2.0_Chr2g0142081 Rosa chinensis HOM05D004290 ORTHO05D005025 2.6e-49 199.1 135 68.1
RcHm_v2.0_Chr2g0142111 Rosa chinensis HOM05D004290 ORTHO05D005025 2.6e-49 199.1 135 68.1
RcHm_v2.0_Chr4g0436181 Rosa chinensis HOM05D004290 ORTHO05D005025 2.6e-49 199.1 136 69.1
ATR1147G043 Amborella trichopoda HOM05D004290 ORTHO05D005025 5.9e-49 198.0 135 65.9
Potri.008G114400 Populus trichocarpa HOM05D004290 ORTHO05D005025 5.9e-49 198.0 136 67.6
Prupe.1G303000 Prunus persica HOM05D004290 ORTHO05D005025 5.9e-49 198.0 136 69.9
Glyma.01G090900 Glycine max HOM05D004290 ORTHO05D005025 1.0e-48 197.2 139 70.5
Gohir.A13G071200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 1.0e-48 197.2 137 66.4
BcaC03g14984 Brassica carinata HOM05D004290 ORTHO05D005025 1.3e-48 196.8 138 68.8
Dinv05808 Davidia involucrata HOM05D000436 ORTHO05D005025 1.3e-48 196.8 127 72.4
FvH4_4g28310 Fragaria vesca HOM05D004290 ORTHO05D005025 1.7e-48 196.4 134 67.2
FAN12G0523 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.7e-48 196.4 134 67.2
RcHm_v2.0_Chr2g0142121 Rosa chinensis HOM05D004290 ORTHO05D005025 1.7e-48 196.4 135 66.7
Aqoxy3G03865 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 2.2e-48 196.1 136 65.4
MSTRG.7697 Avicennia marina HOM05D004290 ORTHO05D005025 2.9e-48 195.7 138 65.9
RcHm_v2.0_Chr6g0244161 Rosa chinensis HOM05D004290 ORTHO05D005025 2.9e-48 195.7 136 67.6
FvH4_6g24180 Fragaria vesca HOM05D004290 ORTHO05D005025 3.8e-48 195.3 137 65.0
FAN14G4265 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.8e-48 195.3 137 65.0
Gohir.D13G069200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 3.8e-48 195.3 137 65.0
Gorai.013G079300 Gossypium raimondii HOM05D004290 ORTHO05D005025 3.8e-48 195.3 137 65.0
MD13G1048900 Malus domestica HOM05D004290 ORTHO05D005025 6.5e-48 194.5 135 68.1
DCAR_026707 Daucus carota HOM05D004290 ORTHO05D005025 1.1e-47 193.7 139 64.0
Phvul.003G024900 Phaseolus vulgaris HOM05D004290 ORTHO05D005025 2.5e-47 192.6 131 71.0
SGA_v2.0_scaffold14G06802 Striga asiatica HOM05D004290 ORTHO05D005025 2.5e-47 192.6 134 65.7
Cc11_g10790 Coffea canephora HOM05D004290 ORTHO05D005025 3.2e-47 192.2 140 65.7
FAN09G0247 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.2e-47 192.2 137 64.2
Lalb_Chr04g0255051 Lupinus albus HOM05D004290 ORTHO05D005025 7.2e-47 191.0 140 66.4
MBI10_g35795_MAGBIO Magnolia biondii HOM05D004290 ORTHO05D005025 7.2e-47 191.0 134 64.9
Psat2g074600 Pisum sativum HOM05D004290 ORTHO05D005025 7.2e-47 191.0 140 63.6
FAN09G2488 Fragaria x ananassa HOM05D004290 ORTHO05D005025 9.4e-47 190.7 138 65.9
Prupe.1G302900 Prunus persica HOM05D004290 ORTHO05D005025 1.2e-46 190.3 142 66.9
FAN07G1902 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.6e-46 189.9 138 64.5
FAN12G2396 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.7e-46 189.1 138 64.5
AUR62007751 Chenopodium quinoa HOM05D004290 ORTHO05D005025 4.7e-46 188.3 136 65.4
Ca_19617_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 6.1e-46 188.0 140 64.3
Ca_30768_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 6.1e-46 188.0 140 64.3
MD16G1050200 Malus domestica HOM05D004290 ORTHO05D005025 7.9e-46 187.6 135 68.1
DCAR_023699 Daucus carota HOM05D004290 ORTHO05D005025 1.0e-45 187.2 138 61.6
SGA_v2.0_scaffold14G06801 Striga asiatica HOM05D004290 ORTHO05D005025 1.4e-45 186.8 134 62.7
FvH4_4g28300 Fragaria vesca HOM05D004290 ORTHO05D005025 2.3e-45 186.0 138 63.8
Medtr5g062660 Medicago truncatula HOM05D004290 ORTHO05D005025 5.1e-45 184.9 138 65.9
ClCG05G023170 Citrullus lanatus HOM05D004290 ORTHO05D005025 6.7e-45 184.5 128 63.3
AUR62002942 Chenopodium quinoa HOM05D004290 ORTHO05D005025 8.8e-45 184.1 136 64.7
TPR.G33571 Trifolium pratense HOM05D004290 ORTHO05D005025 1.1e-44 183.7 141 66.7
MD16G1050100 Malus domestica HOM05D004290 ORTHO05D005025 1.5e-44 183.3 137 64.2
HPP92_021836 Vanilla planifolia HOM05D004290 ORTHO05D005025 5.7e-44 181.4 136 63.2
CDE10G0275 Ceratophyllum demersum HOM05D004290 ORTHO05D005025 7.4e-44 181.0 136 63.2
Peaxi162Scf00118g01310 Petunia axillaris HOM05D004290 ORTHO05D005025 7.4e-44 181.0 136 59.6
DCAR_017507 Daucus carota HOM05D004290 ORTHO05D005025 9.7e-44 180.6 137 60.6
DCAR_026708 Daucus carota HOM05D004290 ORTHO05D005025 9.7e-44 180.6 137 60.6
HanXRQChr16g0528791 Helianthus annuus HOM05D004290 ORTHO05D005025 9.7e-44 180.6 137 62.0
ECA234G2024 Erigeron canadensis HOM05D004290 ORTHO05D005025 2.2e-43 179.5 138 58.7
RcHm_v2.0_Chr4g0436151 Rosa chinensis HOM05D004290 ORTHO05D005025 2.8e-43 179.1 136 64.7
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 2.8e-43 179.1 137 60.6
unitig_744.g24286 Utricularia gibba HOM05D004290 ORTHO05D005025 3.7e-43 178.7 132 62.1
CSS0026618 Camellia sinensis var. sinensis HOM05D004290 ORTHO05D005025 4.8e-43 178.3 143 60.8
SalBow8G2020 Salvia bowleyana HOM05D004290 ORTHO05D005025 4.8e-43 178.3 135 60.0
PGSC0003DMG400030259 Solanum tuberosum HOM05D004290 ORTHO05D005025 8.2e-43 177.6 137 60.6
ECA233G1907 Erigeron canadensis HOM05D004290 ORTHO05D005025 3.1e-42 175.6 137 59.1
Oeu044394.1 Olea europaea HOM05D004290 ORTHO05D005025 3.1e-42 175.6 134 62.7
Lsat_1_v5_gn_8_37520 Lactuca sativa HOM05D004290 ORTHO05D005025 4.1e-42 175.3 130 63.8
HanXRQChr16g0528801 Helianthus annuus HOM05D004290 ORTHO05D005025 1.2e-41 173.7 141 56.0
Actinidia14836 Actinidia chinensis HOM05D000436 ORTHO05D000678 7.7e-41 171.0 112 72.3
SalBow8G3034 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.3e-40 170.2 133 57.1
Prupe.1G303100 Prunus persica HOM05D004290 ORTHO05D005025 6.5e-40 167.9 138 60.1
Peaxi162Scf00367g00519 Petunia axillaris HOM05D004290 ORTHO05D005025 1.9e-39 166.4 136 61.8
QL03p036408 Quercus lobata HOM05D004290 ORTHO05D005025 1.9e-39 166.4 98 72.4
Lsat_1_v5_gn_4_17281 Lactuca sativa HOM05D004290 ORTHO05D005025 4.2e-39 165.2 137 54.7
FAN22G2200 Fragaria x ananassa HOM05D004290 ORTHO05D005025 9.4e-39 164.1 202 45.5
Prupe.1G300800 Prunus persica HOM05D004290 ORTHO05D005025 2.1e-38 162.9 136 59.6
Pp3c20_17780 Physcomitrium patens HOM05D004290 ORTHO05D005025 4.7e-38 161.8 133 53.4
Mapoly0059s0094 Marchantia polymorpha HOM05D004290 ORTHO05D005025 4.0e-37 158.7 138 48.6
AagrBONN_evm.TU.Sc2ySwM_344.2294 Anthoceros agrestis HOM05D004290 ORTHO05D005025 5.2e-37 158.3 136 51.5
CAN.G184.70 Capsicum annuum HOM05D004290 ORTHO05D005025 8.8e-37 157.5 113 68.1
Sopen03g007670 Solanum pennellii HOM05D004290 ORTHO05D005025 1.1e-36 157.1 137 55.5
ATR1147G035 Amborella trichopoda HOM05D004290 ORTHO05D005025 4.1e-34 148.7 144 51.4
CBR_g26184 Chara braunii HOM05D004290 ORTHO05D005025 9.1e-34 147.5 138 48.6
MSTRG.13496 Avicennia marina HOM05D004290 ORTHO05D005025 2.0e-33 146.4 133 51.9
FAN12G1909 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.5e-33 145.6 137 53.3
FvH4_4g28280 Fragaria vesca HOM05D004290 ORTHO05D005025 1.0e-32 144.1 137 52.6
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 2.2e-32 142.9 97 63.9
Aqoxy3G02627 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 1.5e-28 130.2 72 80.6
Cre03.g184400 Chlamydomonas reinhardtii HOM05D004290 ORTHO05D005025 2.2e-27 126.3 134 47.8
Peaxi162Scf00367g00520 Petunia axillaris HOM05D004290 ORTHO05D005025 8.3e-27 124.4 129 53.5
PRCOL_00005217 Prasinoderma coloniale HOM05D004290 ORTHO05D005025 9.4e-23 110.9 131 43.5
Solyc03g150121.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 2.1e-22 109.8 110 54.5
MCO10G139 Micromonas commoda HOM05D004290 ORTHO05D005025 1.2e-20 104.0 127 44.1
Rhsim09G0114000 Rhododendron simsii HOM05D000436 ORTHO05D000678 1.2e-20 104.0 75 68.0
Nitab4.5_0005210g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 2.0e-17 93.2 117 42.7
Oeu018290.1 Olea europaea HOM05D004290 ORTHO05D005025 3.5e-17 92.4 50 74.0
RcHm_v2.0_Chr2g0142051 Rosa chinensis HOM05D004290 ORTHO05D005025 2.3e-16 89.7 51 66.7
RcHm_v2.0_Chr2g0142061 Rosa chinensis HOM05D004290 ORTHO05D005025 1.5e-15 87.0 64 68.8
FAN02G2314 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.3e-15 85.9 82 56.1
Prupe.1G303300 Prunus persica HOM05D004290 ORTHO05D005025 3.3e-15 85.9 105 46.7
vmacro10513 Vaccinium macrocarpon HOM05D004290 ORTHO05D005025 3.3e-15 85.9 66 68.2
TAR629G2250 Trochodendron aralioides HOM05D004290 ORTHO05D005025 2.8e-14 82.8 41 78.0
MD13G1048800 Malus domestica HOM05D004290 ORTHO05D005025 2.0e-12 76.6 62 61.3
Sopen03g019130 Solanum pennellii HOM05D006181 ORTHO05D008560 8.3e-11 71.2 70 55.7
BcaB03g15846 Brassica carinata HOM05D004290 ORTHO05D005025 1.9e-07 60.1 71 45.1


User provided reference genes

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