Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G03694 Aquilegia oxysepala HOM05D004985 ORTHO05D005912 1.6e-169 599.4 300 100.0
PSO017G5703 Papaver somniferum HOM05D004985 ORTHO05D005912 1.3e-123 446.8 300 74.7
PSO478G5014 Papaver somniferum HOM05D004985 ORTHO05D005912 3.5e-121 438.7 300 73.7
TAR374G0278 Trochodendron aralioides HOM05D004985 ORTHO05D005912 2.3e-120 436.0 300 75.0
MBI19_g00634_MAGBIO Magnolia biondii HOM05D004985 ORTHO05D005912 8.7e-120 434.1 300 75.3
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 8.1e-118 427.6 302 72.5
MSTRG.9599 Avicennia marina HOM05D004985 ORTHO05D005912 9.0e-117 424.1 301 72.4
Hma1.2p1_0060F.1_g033100 Hydrangea macrophylla HOM05D004985 ORTHO05D005912 1.2e-116 423.7 300 71.7
Prupe.5G205100 Prunus persica HOM05D004985 ORTHO05D005912 2.9e-115 419.1 302 69.9
Potri.012G066200 Populus trichocarpa HOM05D004985 ORTHO05D005912 8.4e-115 417.5 300 71.7
CSS0016421 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 1.1e-114 417.2 300 70.7
CSS0040501 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 1.1e-114 417.2 300 70.7
vmacro17610 Vaccinium macrocarpon HOM05D004985 ORTHO05D005912 1.1e-114 417.2 301 71.4
Cc09_g09310 Coffea canephora HOM05D004985 ORTHO05D005912 3.2e-114 415.6 300 69.3
Cpa.g.sc94.56 Carica papaya HOM05D004985 ORTHO05D005912 5.5e-114 414.8 300 71.3
Manes.14G085700 Manihot esculenta HOM05D004985 ORTHO05D005912 5.5e-114 414.8 300 71.3
MSTRG.15338 Avicennia marina HOM05D004985 ORTHO05D005912 9.3e-114 414.1 303 69.0
Oeu014411.1 Olea europaea HOM05D004985 ORTHO05D005912 9.3e-114 414.1 301 71.1
Eucgr.K02531 Eucalyptus grandis HOM05D004985 ORTHO05D005912 1.6e-113 413.3 300 71.7
CiPaw.11G053300 Carya illinoinensis HOM05D004985 ORTHO05D005912 4.6e-113 411.8 300 69.3
GSVIVG01007867001 Vitis vinifera HOM05D004985 ORTHO05D005912 7.9e-113 411.0 300 70.3
QL10p019503 Quercus lobata HOM05D004985 ORTHO05D005912 1.0e-112 410.6 299 69.6
Duzib205G0214 Durio zibethinus HOM05D004985 ORTHO05D005912 3.9e-112 408.7 300 69.0
PGR044G1445 Punica granatum HOM05D004985 ORTHO05D005912 3.9e-112 408.7 300 69.3
Dinv22782 Davidia involucrata HOM05D004985 ORTHO05D005912 6.7e-112 407.9 288 72.6
FvH4_5g13840 Fragaria vesca HOM05D004985 ORTHO05D005912 1.9e-111 406.4 301 68.4
Sed0020095 Sechium edule HOM05D004985 ORTHO05D005912 2.5e-111 406.0 301 69.1
Thecc.03G101800 Theobroma cacao HOM05D004985 ORTHO05D005912 4.3e-111 405.2 300 69.0
Atru.chr9.579 Acer truncatum HOM05D004985 ORTHO05D005912 7.4e-111 404.4 300 70.7
COL.COLO4_06857 Corchorus olitorius HOM05D004985 ORTHO05D005912 1.3e-110 403.7 300 68.3
Sabra12G0048600 Salix brachista HOM05D004985 ORTHO05D005912 1.3e-110 403.7 324 65.7
FAN13G1687 Fragaria x ananassa HOM05D004985 ORTHO05D005912 2.1e-110 402.9 302 67.5
RcHm_v2.0_Chr7g0183091 Rosa chinensis HOM05D004985 ORTHO05D005912 2.1e-110 402.9 301 67.8
Ca_14341_v3 Cicer arietinum L. HOM05D004985 ORTHO05D005912 2.8e-110 402.5 301 69.1
Glyma.04G162700 Glycine max HOM05D004985 ORTHO05D005912 2.8e-110 402.5 299 68.9
Ciclev10021430m.g Citrus clementina HOM05D004985 ORTHO05D005912 3.7e-110 402.1 300 68.3
Gohir.A07G068600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 6.3e-110 401.4 301 69.4
Oeu042721.3 Olea europaea HOM05D004985 ORTHO05D005912 8.2e-110 401.0 301 68.8
DCAR_029981 Daucus carota HOM05D004985 ORTHO05D005912 1.1e-109 400.6 300 68.3
Gohir.D07G073100 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.4e-109 400.2 301 69.1
Gorai.001G077300 Gossypium raimondii HOM05D004985 ORTHO05D005912 3.1e-109 399.1 301 68.8
Migut.D01657 Erythranthe guttata HOM05D004985 ORTHO05D005912 4.1e-109 398.7 301 68.4
TPR.G12221 Trifolium pratense HOM05D004985 ORTHO05D005912 4.1e-109 398.7 298 67.4
arahy.Tifrunner.gnm1.ann1.B21894 Arachis hypogaea HOM05D004985 ORTHO05D005912 5.3e-109 398.3 302 68.2
arahy.Tifrunner.gnm1.ann1.XT1KNI Arachis hypogaea HOM05D004985 ORTHO05D005912 9.0e-109 397.5 302 67.9
CsaV3_1G002920 Cucumis sativus L. HOM05D004985 ORTHO05D005912 9.0e-109 397.5 300 67.7
Psat5g208200 Pisum sativum HOM05D004985 ORTHO05D005912 3.4e-108 395.6 302 68.5
Hund02586 Selenicereus undatus HOM05D004985 ORTHO05D005912 7.6e-108 394.4 300 66.0
TWI31G1299 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 7.6e-108 394.4 300 67.7
THA.LOC104812106 Tarenaya hassleriana HOM05D004985 ORTHO05D005912 1.0e-107 394.0 274 70.8
AT1G18640 Arabidopsis thaliana HOM05D004985 ORTHO05D005912 1.3e-107 393.7 274 70.1
Glyma.06G203300 Glycine max HOM05D004985 ORTHO05D005912 1.3e-107 393.7 239 78.7
Manes.06G084800 Manihot esculenta HOM05D004985 ORTHO05D005912 1.3e-107 393.7 248 76.6
PGSC0003DMG400030337 Solanum tuberosum HOM05D004985 ORTHO05D005912 1.7e-107 393.3 299 67.2
TWI79G1560 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 2.2e-107 392.9 229 82.1
Lsat_1_v5_gn_2_122560 Lactuca sativa HOM05D004985 ORTHO05D005912 5.0e-107 391.7 307 65.5
Medtr3g025840 Medicago truncatula HOM05D004985 ORTHO05D005912 5.0e-107 391.7 300 66.0
CARHR019270 Cardamine hirsuta HOM05D004985 ORTHO05D005912 8.4e-107 391.0 304 65.5
Lalb_Chr12g0197201 Lupinus albus HOM05D004985 ORTHO05D005912 8.4e-107 391.0 300 68.3
MD14G1211600 Malus domestica HOM05D004985 ORTHO05D005912 8.4e-107 391.0 245 78.4
AL1G31080 Arabidopsis lyrata HOM05D004985 ORTHO05D005912 1.1e-106 390.6 274 69.7
BraA06t24599Z Brassica rapa HOM05D004985 ORTHO05D005912 1.4e-106 390.2 305 64.6
MD06G1202500 Malus domestica HOM05D004985 ORTHO05D005912 1.9e-106 389.8 245 78.8
Solyc06g076510.3 Solanum lycopersicum HOM05D004985 ORTHO05D005912 3.2e-106 389.0 280 69.6
SGA_v2.0_scaffold42G16037 Striga asiatica HOM05D004985 ORTHO05D005912 5.5e-106 388.3 301 65.4
AUR62021560 Chenopodium quinoa HOM05D004985 ORTHO05D005912 7.2e-106 387.9 300 64.7
A06p14760 Brassica napus HOM05D004985 ORTHO05D005912 9.3e-106 387.5 305 63.9
SalBow4G0956 Salvia bowleyana HOM05D004985 ORTHO05D005912 9.3e-106 387.5 302 67.5
Sopen06g032910 Solanum pennellii HOM05D004985 ORTHO05D005912 1.2e-105 387.1 280 68.9
Phvul.010G007300 Phaseolus vulgaris HOM05D004985 ORTHO05D005912 1.6e-105 386.7 300 66.3
BcaC05g25759 Brassica carinata HOM05D004985 ORTHO05D005912 2.1e-105 386.3 303 65.0
C05p16910 Brassica napus HOM05D004985 ORTHO05D005912 2.1e-105 386.3 303 65.0
BolC5t30393H Brassica oleracea HOM05D004985 ORTHO05D005912 2.1e-105 386.3 303 65.0
CANSAT35G1156 Cannabis sativa HOM05D004985 ORTHO05D005912 2.7e-105 386.0 302 65.6
BcaB07g31884 Brassica carinata HOM05D004985 ORTHO05D005912 3.5e-105 385.6 257 72.0
ClCG06G015640 Citrullus lanatus HOM05D004985 ORTHO05D005912 3.5e-105 385.6 315 64.4
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 4.6e-105 385.2 313 65.2
Carub.0001s1827 Capsella rubella HOM05D004985 ORTHO05D005912 4.6e-105 385.2 274 68.6
Thhalv10008334m.g Eutrema salsugineum HOM05D004985 ORTHO05D005912 4.6e-105 385.2 257 72.4
CAN.G394.86 Capsicum annuum HOM05D004985 ORTHO05D005912 1.3e-104 383.6 300 65.3
AUR62008533 Chenopodium quinoa HOM05D004985 ORTHO05D005912 1.3e-104 383.6 301 65.1
TPR.G28540 Trifolium pratense HOM05D004985 ORTHO05D005912 1.3e-104 383.6 298 66.1
Nitab4.5_0000116g0440 Nicotiana tabacum HOM05D004985 ORTHO05D005912 2.3e-104 382.9 300 65.3
Sp1g16610 Schrenkiella parvula HOM05D004985 ORTHO05D005912 2.3e-104 382.9 274 68.6
Carub.0007s3048 Capsella rubella HOM05D004985 ORTHO05D005912 5.1e-104 381.7 274 67.2
Peaxi162Scf00481g00631 Petunia axillaris HOM05D004985 ORTHO05D005912 5.1e-104 381.7 299 64.5
MELO3C017224.2 Cucumis melo HOM05D004985 ORTHO05D005912 8.7e-104 380.9 335 61.8
ECA232G4926 Erigeron canadensis HOM05D004985 ORTHO05D005912 1.1e-103 380.6 306 63.1
Lj1g0020192 Lotus japonicus HOM05D004985 ORTHO05D005912 2.5e-103 379.4 229 79.0
Sed0001113 Sechium edule HOM05D004985 ORTHO05D005912 1.3e-102 377.1 300 64.7
A08p30280 Brassica napus HOM05D004985 ORTHO05D005912 2.8e-102 375.9 265 68.7
Aa31LG7G3400 Aethionema arabicum HOM05D004985 ORTHO05D005912 4.8e-102 375.2 309 63.4
Rhsim08G0146000 Rhododendron simsii HOM05D004985 ORTHO05D005912 4.8e-102 375.2 371 57.1
FAN18G1860 Fragaria x ananassa HOM05D004985 ORTHO05D005912 8.2e-102 374.4 301 64.1
VMungo0331G0044 Vigna mungo HOM05D004985 ORTHO05D005912 8.2e-102 374.4 299 65.2
Haze_18480 Corylus avellana HOM05D004985 ORTHO05D005912 1.8e-101 373.2 275 69.1
HanXRQChr09g0270221 Helianthus annuus HOM05D004985 ORTHO05D005912 1.8e-101 373.2 254 72.0
FAN08G1159 Fragaria x ananassa HOM05D004985 ORTHO05D005912 2.2e-99 366.3 302 63.9
BraA08t34961Z Brassica rapa HOM05D004985 ORTHO05D005912 6.5e-99 364.8 245 71.8
Nitab4.5_0004739g0030 Nicotiana tabacum HOM05D004985 ORTHO05D005912 2.5e-98 362.8 287 65.5
TAR622G1020 Trochodendron aralioides HOM05D004985 ORTHO05D005912 3.2e-98 362.5 305 66.6
EL10Ac8g18666 Beta vulgaris HOM05D004985 ORTHO05D005912 9.4e-98 360.9 221 78.3
Lj1g0027941 Lotus japonicus HOM05D004985 ORTHO05D005912 2.7e-97 359.4 229 77.3
Os11g0629500 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 6.1e-97 358.2 301 63.8
Nn4g23424 Nelumbo nucifera HOM05D004985 ORTHO05D005912 1.0e-96 357.5 289 66.4
C08p18810 Brassica napus HOM05D004985 ORTHO05D005912 1.7e-94 350.1 318 58.5
unitig_60.g25411 Utricularia gibba HOM05D004985 ORTHO05D005912 1.7e-94 350.1 272 64.7
Zm00001eb166440 Zea mays HOM05D004985 ORTHO05D005912 4.8e-94 348.6 230 74.3
ATR0681G325 Amborella trichopoda HOM05D004985 ORTHO05D005912 1.8e-93 346.7 251 68.5
Os12g0502400 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 6.9e-93 344.7 234 70.1
Nn3g17450 Nelumbo nucifera HOM05D004985 ORTHO05D005912 1.3e-91 340.5 260 68.8
AUR62008530 Chenopodium quinoa HOM05D004985 ORTHO05D005912 2.1e-89 333.2 301 59.5
Duzib084G0347 Durio zibethinus HOM05D004985 ORTHO05D005912 6.3e-86 321.6 300 59.0
SMO137G0315 Selaginella moellendorffii HOM05D004985 ORTHO05D005912 1.4e-85 320.5 225 67.1
AagrBONN_evm.TU.Sc2ySwM_228.2773 Anthoceros agrestis HOM05D004985 ORTHO05D005912 4.1e-85 318.9 226 66.8
BolC8t49507H Brassica oleracea HOM05D004985 ORTHO05D005912 2.0e-84 316.6 235 67.2
Pp3c8_16890 Physcomitrium patens HOM05D004985 ORTHO05D005912 3.5e-84 315.8 228 66.7
BcaC07g38933 Brassica carinata HOM05D004985 ORTHO05D005912 4.5e-84 315.5 232 67.7
CDE06G0240 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 8.5e-83 311.2 205 75.1
Cc11_g04830 Coffea canephora HOM05D004985 ORTHO05D005912 1.5e-82 310.5 261 64.0
Sc10g0009710 Simmondsia chinensis HOM05D004985 ORTHO05D005912 4.7e-81 305.4 220 70.9
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 8.0e-81 304.7 231 64.5
Mapoly0023s0019 Marchantia polymorpha HOM05D004985 ORTHO05D005912 1.7e-78 297.0 219 64.8
CDE07G0155 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 1.0e-72 277.7 270 52.2
PRCOL_00003809 Prasinoderma coloniale HOM05D004985 ORTHO05D005912 2.7e-65 253.1 228 57.5
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 1.0e-64 251.1 291 51.2
MCO16G297 Micromonas commoda HOM05D004985 ORTHO05D005912 1.1e-61 241.1 217 54.8
Nitab4.5_0000744g0020 Nicotiana tabacum HOM05D004985 ORTHO05D005912 4.5e-60 235.7 428 37.9
Lj7A653T48 Lonicera japonica HOM05D004985 ORTHO05D005912 1.0e-59 234.6 142 78.9
Cre04.g217955 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 1.6e-57 227.3 221 49.3
Cre04.g217959 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 1.6e-57 227.3 221 49.3
SGA_v2.0_scaffold3G01460 Striga asiatica HOM05D004985 ORTHO05D005912 1.4e-56 224.2 142 76.1
HPP92_012184 Vanilla planifolia HOM05D004985 ORTHO05D005912 6.8e-56 221.9 190 60.5
Nitab4.5_0002968g0050 Nicotiana tabacum HOM05D004985 ORTHO05D005912 2.2e-54 216.9 133 77.4
Cre10.g421700 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 1.4e-48 197.6 257 40.9
Cre01.g053000 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 4.0e-48 196.1 254 41.3
Cre01.g053150 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 1.5e-47 194.1 251 41.0
Haze_07724 Corylus avellana HOM05D004985 ORTHO05D005912 6.4e-46 188.7 159 63.5
EL10Ac1g02367 Beta vulgaris HOM05D004985 ORTHO05D005912 8.6e-43 178.3 138 65.2
HPP92_012182 Vanilla planifolia HOM05D004985 ORTHO05D005912 9.5e-42 174.9 112 75.0
SGA_v2.0_scaffold1066G53824 Striga asiatica HOM05D004985 ORTHO05D005912 4.0e-40 169.5 169 56.2
Gohir.A07G164340 Gossypium hirsutum HOM05D004985 ORTHO05D005912 6.0e-36 155.6 99 75.8
CBR_g37694 Chara braunii HOM05D004985 ORTHO05D005912 3.1e-32 143.3 108 61.1
Gohir.A06G085600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 3.1e-32 143.3 97 73.2
SEGI_10948 Sequoiadendron giganteum HOM05D004985 ORTHO05D005912 2.9e-30 136.7 99 66.7
SalBow5G1356 Salvia bowleyana HOM05D004985 ORTHO05D005912 5.1e-27 125.9 101 67.3
Oeu014405.1 Olea europaea HOM05D004985 ORTHO05D005912 1.9e-26 124.0 92 69.6
Haze_15308 Corylus avellana HOM05D004985 ORTHO05D005912 1.6e-20 104.4 67 73.1
Peaxi162Scf00086g01110 Petunia axillaris HOM05D004985 ORTHO05D005912 2.1e-20 104.0 160 44.4
Cfa004103 Carpinus fangiana HOM05D004985 ORTHO05D005912 3.5e-20 103.2 158 45.6
SHI27080 Sapria himalayana HOM05D004985 ORTHO05D005912 1.7e-14 84.3 83 57.8
Cfa024059 Carpinus fangiana HOM05D004985 ORTHO05D005912 3.4e-07 60.1 179 31.3


User provided reference genes

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