Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 7.4e-64 248.4 328 100.0
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 5.0e-52 209.1 324 89.2
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 7.2e-51 205.3 324 88.3
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 7.9e-50 201.8 328 84.5
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 5.2e-49 199.1 319 88.1
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.1e-48 198.0 319 87.8
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 1.1e-48 198.0 325 88.6
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 1.5e-48 197.6 326 88.0
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 2.0e-48 197.2 321 88.8
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 4.4e-48 196.1 317 88.3
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 9.7e-48 194.9 317 88.3
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 9.7e-48 194.9 319 87.5
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 9.7e-48 194.9 324 88.0
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 1.3e-47 194.5 319 85.6
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 1.7e-47 194.1 327 85.9
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 1.7e-47 194.1 316 89.2
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 2.8e-47 193.4 319 87.8
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 3.7e-47 193.0 326 87.1
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 8.2e-47 191.8 319 88.1
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 1.1e-46 191.4 329 89.7
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 1.1e-46 191.4 325 88.0
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 1.4e-46 191.0 321 88.5
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 1.8e-46 190.7 328 90.9
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 3.1e-46 189.9 319 87.5
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 4.1e-46 189.5 327 87.2
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 4.1e-46 189.5 325 87.4
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 4.1e-46 189.5 322 87.9
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 4.1e-46 189.5 319 88.4
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 4.1e-46 189.5 325 89.2
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 4.1e-46 189.5 314 86.3
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 5.3e-46 189.1 325 87.4
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 5.3e-46 189.1 324 87.3
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 5.3e-46 189.1 324 87.3
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 5.3e-46 189.1 323 87.6
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 5.3e-46 189.1 323 87.6
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 5.3e-46 189.1 322 87.9
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 5.3e-46 189.1 323 87.9
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 7.0e-46 188.7 325 86.8
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 7.0e-46 188.7 322 87.9
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 7.0e-46 188.7 322 87.3
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 7.0e-46 188.7 316 88.6
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 9.1e-46 188.3 321 87.9
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.2e-45 188.0 322 87.6
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.6e-45 187.6 319 85.3
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 2.6e-45 186.8 324 85.5
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 3.5e-45 186.4 319 85.3
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 4.5e-45 186.0 322 86.6
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 4.5e-45 186.0 333 76.9
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 4.5e-45 186.0 322 87.9
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 5.9e-45 185.7 326 86.5
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 5.9e-45 185.7 322 87.9
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 5.9e-45 185.7 322 87.9
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 7.7e-45 185.3 325 86.5
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 7.7e-45 185.3 321 84.7
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 1.0e-44 184.9 327 89.0
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 1.0e-44 184.9 326 86.2
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 1.0e-44 184.9 326 84.7
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 1.3e-44 184.5 318 92.5
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 1.7e-44 184.1 323 86.4
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 1.7e-44 184.1 317 88.0
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 2.2e-44 183.7 324 86.4
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 2.2e-44 183.7 321 87.5
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 2.2e-44 183.7 317 87.4
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 2.9e-44 183.3 323 86.4
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 2.9e-44 183.3 320 85.3
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 2.9e-44 183.3 321 87.2
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 3.8e-44 183.0 324 86.1
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 5.0e-44 182.6 319 88.4
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 5.0e-44 182.6 324 86.4
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 5.0e-44 182.6 321 83.8
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 6.5e-44 182.2 323 87.0
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 8.5e-44 181.8 325 87.1
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 1.1e-43 181.4 323 85.8
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 1.1e-43 181.4 326 84.7
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 1.5e-43 181.0 323 86.1
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 1.5e-43 181.0 323 85.8
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 1.9e-43 180.6 321 84.7
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 2.5e-43 180.3 323 85.4
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 2.5e-43 180.3 323 85.4
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 2.5e-43 180.3 323 85.4
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 3.2e-43 179.9 321 86.3
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 3.2e-43 179.9 321 86.3
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 3.2e-43 179.9 318 86.8
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 3.2e-43 179.9 319 86.5
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 3.2e-43 179.9 324 86.4
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 5.5e-43 179.1 318 86.2
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 5.5e-43 179.1 327 86.2
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 5.5e-43 179.1 326 84.0
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 5.5e-43 179.1 326 84.4
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 7.2e-43 178.7 319 86.5
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 9.4e-43 178.3 319 85.6
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 1.2e-42 177.9 327 86.2
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 1.2e-42 177.9 327 86.2
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 1.6e-42 177.6 323 85.1
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 3.6e-42 176.4 326 85.9
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 3.6e-42 176.4 326 84.4
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 6.1e-42 175.6 305 93.4
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 8.0e-42 175.3 326 85.9
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 8.0e-42 175.3 304 86.8
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 1.0e-41 174.9 326 84.4
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 1.4e-41 174.5 327 84.4
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 1.4e-41 174.5 100 82.0
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 3.0e-41 173.3 319 85.0
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 3.0e-41 173.3 321 84.1
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 4.0e-41 172.9 311 87.5
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 5.2e-41 172.6 326 83.7
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 5.2e-41 172.6 319 85.9
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 5.2e-41 172.6 348 61.8
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 6.7e-41 172.2 100 85.0
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 6.7e-41 172.2 321 71.3
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 1.2e-40 171.4 100 83.0
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 1.5e-40 171.0 99 83.8
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 1.5e-40 171.0 102 83.3
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 2.0e-40 170.6 102 81.4
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 2.0e-40 170.6 339 78.2
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 2.6e-40 170.2 299 89.3
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 3.3e-40 169.9 324 86.4
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 3.3e-40 169.9 318 89.9
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 5.7e-40 169.1 339 57.5
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 7.5e-40 168.7 307 78.2
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 1.7e-39 167.5 94 84.0
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 2.8e-39 166.8 244 85.2
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 3.7e-39 166.4 100 85.0
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 4.8e-39 166.0 319 78.1
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 4.8e-39 166.0 319 78.1
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 8.2e-39 165.2 93 83.9
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 8.2e-39 165.2 93 83.9
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 1.4e-38 164.5 94 85.1
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 1.8e-38 164.1 245 80.8
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 1.8e-38 164.1 343 81.6
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 3.1e-38 163.3 102 79.4
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 3.1e-38 163.3 99 80.8
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 3.1e-38 163.3 99 80.8
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 5.3e-38 162.5 250 82.8
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 1.2e-37 161.4 296 87.5
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 1.6e-37 161.0 97 83.5
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 2.7e-37 160.2 104 80.8
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.7e-37 160.2 93 80.6
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 2.7e-37 160.2 93 80.6
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 2.7e-37 160.2 343 74.1
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 2.7e-37 160.2 104 76.0
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 3.5e-37 159.8 96 80.2
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 2.9e-36 156.8 243 66.3
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 3.8e-36 156.4 95 81.1
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 3.8e-36 156.4 313 81.5
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 2.1e-34 150.6 331 66.5
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 1.0e-33 148.3 338 77.5
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 1.4e-33 147.9 326 78.2
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 4.0e-33 146.4 105 74.3
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 2.0e-32 144.1 313 80.8
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 3.7e-31 139.8 101 69.3
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 8.3e-31 138.7 101 68.3
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 5.4e-30 136.0 101 66.3
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 7.0e-30 135.6 73 90.4
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 3.5e-29 133.3 73 83.6
CARHR014280 Cardamine hirsuta HOM05D003751 ORTHO05D004765 1.3e-28 131.3 101 61.4
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 2.9e-28 130.2 95 65.3
Oeu031422.1 Olea europaea HOM05D003751 ORTHO05D004765 2.3e-25 120.6 78 76.9
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 5.9e-21 105.9 75 64.0
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 4.3e-19 99.8 98 58.2
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 8.0e-18 95.5 65 72.3
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.4e-17 94.7 73 65.8
Sopen05g021560 Solanum pennellii HOM05D003751 ORTHO05D004765 6.8e-17 92.4 50 82.0
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.2e-16 91.7 278 75.9
SMO239G0097 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 1.5e-16 91.3 64 62.5
SMO239G0021 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 2.0e-16 90.9 88 50.0
SEGI_40768 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 7.0e-14 82.4 65 60.0
Dinv16710 Davidia involucrata HOM05D003751 ORTHO05D004765 1.2e-13 81.6 246 74.0
Sopen05g021540 Solanum pennellii HOM05D003751 ORTHO05D004765 5.0e-12 76.3 39 87.2
RcHm_v2.0_Chr3g0459551 Rosa chinensis HOM05D003751 ORTHO05D004765 4.3e-11 73.2 48 77.1
BolC2t12198H Brassica oleracea HOM05D003751 ORTHO05D017703 9.5e-11 72.0 102 47.1
C02p61470 Brassica napus HOM05D003751 ORTHO05D017703 8.0e-10 68.9 102 45.1
Lj3A1031T31 Lonicera japonica HOM05D003751 ORTHO05D004765 1.4e-09 68.2 122 47.5
BraA02t09094Z Brassica rapa HOM05D003751 ORTHO05D004765 1.5e-08 64.7 42 76.2
CSS0008157 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 4.4e-08 63.2 120 79.2
Sopen01g022300 Solanum pennellii HOM05D003751 ORTHO05D004765 3.7e-07 60.1 33 81.8
Gohir.A03G103400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 8.3e-07 58.9 32 87.5


User provided reference genes

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