Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G03523 Aquilegia oxysepala HOM05D004550 ORTHO05D005340 1.4e-128 463.0 235 100.0
Nn4g23307 Nelumbo nucifera HOM05D004550 ORTHO05D005340 2.0e-87 326.2 235 71.5
TAR629G0577 Trochodendron aralioides HOM05D004550 ORTHO05D005340 5.1e-83 311.6 235 68.9
Nn3g17356 Nelumbo nucifera HOM05D004550 ORTHO05D005340 1.3e-81 307.0 235 69.8
CSS0021997 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 2.1e-81 306.2 231 66.7
CSS0045485 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 1.8e-80 303.1 231 66.2
Dinv34106 Davidia involucrata HOM05D004550 ORTHO05D005340 1.8e-80 303.1 232 67.2
Nitab4.5_0011843g0010 Nicotiana tabacum HOM05D004550 ORTHO05D005340 4.5e-79 298.5 233 66.1
Nitab4.5_0000334g0090 Nicotiana tabacum HOM05D004550 ORTHO05D005340 2.9e-78 295.8 235 64.7
Cc11_g12470 Coffea canephora HOM05D004550 ORTHO05D005340 3.8e-78 295.4 232 66.8
Hma1.2p1_0354F.1_g133690 Hydrangea macrophylla HOM05D004550 ORTHO05D005340 4.2e-77 292.0 231 65.4
TAR371G1135 Trochodendron aralioides HOM05D004550 ORTHO05D005340 7.1e-77 291.2 210 71.4
Solyc05g012710.4 Solanum lycopersicum HOM05D004550 ORTHO05D005340 9.3e-77 290.8 231 64.5
Sopen05g007540 Solanum pennellii HOM05D004550 ORTHO05D005340 9.3e-77 290.8 231 64.9
CAN.G1200.3 Capsicum annuum HOM05D004550 ORTHO05D005340 1.2e-76 290.4 231 63.6
PGSC0003DMG400028333 Solanum tuberosum HOM05D004550 ORTHO05D005340 6.0e-76 288.1 231 64.1
MBI19_g03106_MAGBIO Magnolia biondii HOM05D004550 ORTHO05D005340 3.0e-75 285.8 236 64.8
Rhsim12G0077600 Rhododendron simsii HOM05D004550 ORTHO05D005340 3.0e-75 285.8 229 65.1
Peaxi162Scf00364g00223 Petunia axillaris HOM05D004550 ORTHO05D005340 5.1e-75 285.0 231 62.8
CiPaw.06G089400 Carya illinoinensis HOM05D004550 ORTHO05D005340 6.7e-75 284.6 230 64.8
TAR374G1091 Trochodendron aralioides HOM05D004550 ORTHO05D005340 8.7e-75 284.3 188 75.0
Atru.chr11.1702 Acer truncatum HOM05D004550 ORTHO05D005340 2.5e-74 282.7 231 65.8
CiPaw.05G128700 Carya illinoinensis HOM05D004550 ORTHO05D005340 3.3e-74 282.3 230 63.0
CANSAT64G2188 Cannabis sativa HOM05D004550 ORTHO05D005340 9.6e-74 280.8 235 63.8
QL03p070023 Quercus lobata HOM05D004550 ORTHO05D005340 9.6e-74 280.8 234 62.4
Migut.L01230 Erythranthe guttata HOM05D004550 ORTHO05D005340 2.1e-73 279.6 231 62.3
GSVIVG01001334001 Vitis vinifera HOM05D004550 ORTHO05D005340 2.1e-73 279.6 230 64.3
FAN17G0531 Fragaria x ananassa HOM05D004550 ORTHO05D005340 3.7e-73 278.9 231 64.9
Gohir.D12G165500 Gossypium hirsutum HOM05D004550 ORTHO05D005340 8.2e-73 277.7 231 65.8
Gorai.008G178200 Gossypium raimondii HOM05D004550 ORTHO05D005340 8.2e-73 277.7 231 65.8
RcHm_v2.0_Chr4g0438981 Rosa chinensis HOM05D004550 ORTHO05D005340 8.2e-73 277.7 231 64.5
Cfa008917 Carpinus fangiana HOM05D004550 ORTHO05D005340 1.8e-72 276.6 235 62.6
FvH4_4g30590 Fragaria vesca HOM05D004550 ORTHO05D005340 3.1e-72 275.8 231 64.5
Prupe.1G281100 Prunus persica HOM05D004550 ORTHO05D005340 3.1e-72 275.8 230 64.3
GSVIVG01011473001 Vitis vinifera HOM05D004550 ORTHO05D005340 9.0e-72 274.2 237 61.6
Actinidia31956 Actinidia chinensis HOM05D004550 ORTHO05D005340 1.2e-71 273.9 234 62.0
Gohir.A12G162200 Gossypium hirsutum HOM05D004550 ORTHO05D005340 1.2e-71 273.9 231 64.1
Duzib268G1083 Durio zibethinus HOM05D004550 ORTHO05D005340 1.5e-71 273.5 231 62.3
Thecc.02G338200 Theobroma cacao HOM05D004550 ORTHO05D005340 2.0e-71 273.1 231 64.1
FAN07G0354 Fragaria x ananassa HOM05D004550 ORTHO05D005340 3.4e-71 272.3 231 63.6
vmacro01339 Vaccinium macrocarpon HOM05D004550 ORTHO05D005340 3.4e-71 272.3 199 66.8
PSO063G5570 Papaver somniferum HOM05D004550 ORTHO05D005340 7.6e-71 271.2 230 64.3
PSO063G6186 Papaver somniferum HOM05D004550 ORTHO05D005340 1.3e-70 270.4 230 63.9
TWI31G0520 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 2.2e-70 269.6 232 63.4
MSTRG.7770 Avicennia marina HOM05D004550 ORTHO05D005340 2.9e-70 269.2 234 59.8
Eucgr.B03186 Eucalyptus grandis HOM05D004550 ORTHO05D005340 3.8e-70 268.9 233 63.9
Duzib251G0963 Durio zibethinus HOM05D004550 ORTHO05D005340 6.5e-70 268.1 231 64.1
Manes.05G107100 Manihot esculenta HOM05D004550 ORTHO05D005340 8.4e-70 267.7 237 62.9
COL.COLO4_27949 Corchorus olitorius HOM05D004550 ORTHO05D005340 1.1e-69 267.3 217 64.5
CsaV3_5G025150 Cucumis sativus L. HOM05D004550 ORTHO05D005340 3.2e-69 265.8 230 63.0
ClCG09G021950 Citrullus lanatus HOM05D004550 ORTHO05D005340 4.2e-69 265.4 229 63.3
DCAR_030983 Daucus carota HOM05D004550 ORTHO05D005340 4.2e-69 265.4 234 61.5
Sed0017620 Sechium edule HOM05D004550 ORTHO05D005340 4.2e-69 265.4 232 61.6
Phvul.002G090800 Phaseolus vulgaris HOM05D004550 ORTHO05D005340 7.2e-69 264.6 235 62.1
FAN22G1576 Fragaria x ananassa HOM05D004550 ORTHO05D005340 2.7e-68 262.7 229 62.4
Lalb_Chr17g0340931 Lupinus albus HOM05D004550 ORTHO05D005340 6.1e-68 261.5 235 61.7
Potri.010G162600 Populus trichocarpa HOM05D004550 ORTHO05D005340 6.1e-68 261.5 234 63.7
Ciclev10032704m.g Citrus clementina HOM05D004550 ORTHO05D005340 7.9e-68 261.2 231 62.8
Potri.008G092300 Populus trichocarpa HOM05D004550 ORTHO05D005340 7.9e-68 261.2 237 60.8
PGR102G3210 Punica granatum HOM05D004550 ORTHO05D005340 3.0e-67 259.2 233 61.4
Glyma.02G112600 Glycine max HOM05D004550 ORTHO05D005340 3.9e-67 258.8 234 61.1
FAN12G3802 Fragaria x ananassa HOM05D004550 ORTHO05D005340 5.1e-67 258.5 222 64.0
HanXRQChr12g0362721 Helianthus annuus HOM05D004550 ORTHO05D005340 6.7e-67 258.1 232 60.8
Glyma.01G054200 Glycine max HOM05D004550 ORTHO05D005340 8.7e-67 257.7 233 60.9
VMungo1215G2831 Vigna mungo HOM05D004550 ORTHO05D005340 2.5e-66 256.1 235 61.3
TWI79G1514 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 5.7e-66 255.0 234 60.7
RcHm_v2.0_Chr2g0166971 Rosa chinensis HOM05D004550 ORTHO05D005340 7.4e-66 254.6 232 59.5
Actinidia19927 Actinidia chinensis HOM05D004550 ORTHO05D005340 1.6e-65 253.4 205 63.4
Sabra08G0069100 Salix brachista HOM05D004550 ORTHO05D005340 1.6e-65 253.4 282 53.5
EL10Ac6g13282 Beta vulgaris HOM05D004550 ORTHO05D005340 3.7e-65 252.3 262 54.6
Cpa.g.sc1.80 Carica papaya HOM05D004550 ORTHO05D005340 3.7e-65 252.3 189 68.3
Oeu021093.1 Olea europaea HOM05D004550 ORTHO05D005340 8.2e-65 251.1 187 66.8
Lj2g0016497 Lotus japonicus HOM05D004550 ORTHO05D005340 1.8e-64 250.0 232 59.1
Sc04g0007790 Simmondsia chinensis HOM05D004550 ORTHO05D005340 1.8e-64 250.0 231 58.9
MELO3C002974.2 Cucumis melo HOM05D004550 ORTHO05D005340 2.4e-64 249.6 258 55.8
SGA_v2.0_scaffold36G14423 Striga asiatica HOM05D004550 ORTHO05D005340 3.1e-64 249.2 237 59.5
SGA_v2.0_scaffold16G07747 Striga asiatica HOM05D004550 ORTHO05D005340 9.0e-64 247.7 233 57.1
Ah.03g134600 Amaranthus hybridus HOM05D004550 ORTHO05D005340 1.2e-63 247.3 231 56.3
Ca_27938_v3 Cicer arietinum L. HOM05D004550 ORTHO05D005340 1.2e-63 247.3 235 59.1
FvH4_6g47773 Fragaria vesca HOM05D004550 ORTHO05D005340 1.2e-63 247.3 234 58.1
DCAR_007179 Daucus carota HOM05D004550 ORTHO05D005340 1.5e-63 246.9 231 58.4
ECA233G5814 Erigeron canadensis HOM05D004550 ORTHO05D005340 1.5e-63 246.9 221 59.3
arahy.Tifrunner.gnm1.ann1.M1L69X Arachis hypogaea HOM05D004550 ORTHO05D005340 2.6e-63 246.1 234 57.7
HanXRQChr08g0210541 Helianthus annuus HOM05D004550 ORTHO05D005340 2.6e-63 246.1 231 59.3
HanXRQChr08g0211031 Helianthus annuus HOM05D004550 ORTHO05D005340 2.6e-63 246.1 231 59.3
Haze_11945 Corylus avellana HOM05D004550 ORTHO05D005340 4.5e-63 245.4 187 65.2
arahy.Tifrunner.gnm1.ann1.F9ESEJ Arachis hypogaea HOM05D004550 ORTHO05D005340 7.7e-63 244.6 224 58.9
Lalb_Chr04g0255821 Lupinus albus HOM05D004550 ORTHO05D005340 1.0e-62 244.2 236 58.5
Lsat_1_v5_gn_8_46800 Lactuca sativa HOM05D004550 ORTHO05D005340 1.7e-62 243.4 229 58.5
TPR.G30749 Trifolium pratense HOM05D004550 ORTHO05D005340 1.7e-62 243.4 231 59.3
unitig_21.g20859 Utricularia gibba HOM05D004550 ORTHO05D005340 2.2e-62 243.0 185 64.9
Medtr5g043020 Medicago truncatula HOM05D004550 ORTHO05D005340 6.5e-62 241.5 233 58.8
Ah.02g129300 Amaranthus hybridus HOM05D004550 ORTHO05D005340 8.5e-62 241.1 252 54.4
FAN05G1708 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.4e-61 240.4 229 59.0
Manes.05G087100 Manihot esculenta HOM05D004550 ORTHO05D005340 2.5e-61 239.6 162 73.5
PSO478G0019 Papaver somniferum HOM05D004550 ORTHO05D005340 5.5e-61 238.4 233 57.1
Psat2g127440 Pisum sativum HOM05D004550 ORTHO05D005340 7.2e-61 238.0 233 57.5
Sabra10G0123800 Salix brachista HOM05D001252 ORTHO05D005340 2.1e-60 236.5 203 62.1
Thhalv10019103m.g Eutrema salsugineum HOM05D004550 ORTHO05D005340 2.3e-59 233.0 229 56.8
Sp5g24440 Schrenkiella parvula HOM05D004550 ORTHO05D005340 3.0e-59 232.6 229 57.6
C02p26330 Brassica napus HOM05D004550 ORTHO05D005340 1.1e-58 230.7 229 58.1
BolC2t08705H Brassica oleracea HOM05D004550 ORTHO05D005340 1.5e-58 230.3 229 57.6
CARHR062270 Cardamine hirsuta HOM05D004550 ORTHO05D005340 2.0e-58 229.9 230 56.5
CDE04G2021 Ceratophyllum demersum HOM05D004550 ORTHO05D005340 2.0e-58 229.9 251 53.0
THA.LOC104822027 Tarenaya hassleriana HOM05D004550 ORTHO05D005340 2.5e-58 229.6 234 56.8
C06p40530 Brassica napus HOM05D004550 ORTHO05D005340 4.3e-58 228.8 229 55.0
A07p35690 Brassica napus HOM05D004550 ORTHO05D005340 5.7e-58 228.4 229 55.5
BraA07t31157Z Brassica rapa HOM05D004550 ORTHO05D005340 5.7e-58 228.4 229 55.5
AL2G28500 Arabidopsis lyrata HOM05D004550 ORTHO05D005340 1.3e-57 227.3 232 56.9
BolC6t39378H Brassica oleracea HOM05D004550 ORTHO05D005340 1.3e-57 227.3 229 54.6
ATR0730G201 Amborella trichopoda HOM05D004550 ORTHO05D005340 1.7e-57 226.9 187 65.8
BcaB05g24446 Brassica carinata HOM05D004550 ORTHO05D005340 1.7e-57 226.9 229 56.3
FAN14G0263 Fragaria x ananassa HOM05D004550 ORTHO05D005340 2.2e-57 226.5 176 65.9
Prupe.3G261900 Prunus persica HOM05D004550 ORTHO05D005340 2.8e-57 226.1 220 59.1
AT1G69390 Arabidopsis thaliana HOM05D004550 ORTHO05D005340 3.7e-57 225.7 232 56.0
Hund05856 Selenicereus undatus HOM05D004550 ORTHO05D005340 8.2e-57 224.6 216 57.4
Aa31LG4G11470 Aethionema arabicum HOM05D004550 ORTHO05D005340 1.1e-56 224.2 222 58.6
Carub.0002s1599 Capsella rubella HOM05D004550 ORTHO05D005340 2.0e-55 219.9 230 55.2
HanXRQChr17g0545411 Helianthus annuus HOM05D004550 ORTHO05D005340 4.5e-55 218.8 231 56.3
BcaB03g15897 Brassica carinata HOM05D004550 ORTHO05D005340 5.9e-55 218.4 234 55.6
A02p15870 Brassica napus HOM05D004550 ORTHO05D005340 5.0e-54 215.3 156 71.2
MD09G1057200 Malus domestica HOM05D004550 ORTHO05D005340 8.5e-54 214.5 215 58.1
HPP92_018458 Vanilla planifolia HOM05D004550 ORTHO05D005340 8.5e-54 214.5 241 53.1
Os12g0498400 Oryza sativa ssp. japonica HOM05D004550 ORTHO05D005340 1.1e-53 214.2 204 58.3
MSTRG.729 Avicennia marina HOM05D004550 ORTHO05D005340 3.2e-53 212.6 137 75.9
AUR62005866 Chenopodium quinoa HOM05D004550 ORTHO05D005340 1.2e-52 210.7 232 50.4
BcaC03g15080 Brassica carinata HOM05D004550 ORTHO05D005340 4.7e-52 208.8 151 72.2
Sabra04G0067200 Salix brachista HOM05D004550 ORTHO05D005340 4.7e-52 208.8 215 56.7
Potri.004G121000 Populus trichocarpa HOM05D004550 ORTHO05D005340 1.8e-51 206.8 205 57.1
AUR62032858 Chenopodium quinoa HOM05D004550 ORTHO05D005340 1.1e-50 204.1 232 49.6
MELO3C012132.2 Cucumis melo HOM05D004550 ORTHO05D005340 6.3e-49 198.4 225 50.2
CsaV3_5G033110 Cucumis sativus L. HOM05D004550 ORTHO05D005340 1.4e-48 197.2 233 49.4
Gohir.D02G127801 Gossypium hirsutum HOM05D004550 ORTHO05D005340 1.6e-47 193.7 233 50.2
Gorai.005G143600 Gossypium raimondii HOM05D004550 ORTHO05D005340 1.6e-47 193.7 233 50.2
Sed0010995 Sechium edule HOM05D004550 ORTHO05D005340 4.2e-45 185.7 226 49.1
SEGI_17925 Sequoiadendron giganteum HOM05D004550 ORTHO05D005340 2.1e-44 183.3 188 56.9
Zm00001eb409620 Zea mays HOM05D004550 ORTHO05D005340 4.0e-43 179.1 141 66.0
ClCG05G023910 Citrullus lanatus HOM05D004550 ORTHO05D005340 1.8e-40 170.2 138 64.5
Thecc.02G337600 Theobroma cacao HOM05D004550 ORTHO05D005340 1.3e-38 164.1 109 77.1
MD16G1066100 Malus domestica HOM05D004550 ORTHO05D005340 1.0e-35 154.5 99 78.8
Actinidia33237 Actinidia chinensis HOM05D004550 ORTHO05D005340 6.8e-35 151.8 153 52.3
Pp3c20_5010 Physcomitrium patens HOM05D004550 ORTHO05D005340 6.8e-35 151.8 130 64.6
Pp3c23_20800 Physcomitrium patens HOM05D004550 ORTHO05D005340 1.2e-34 151.0 141 59.6
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 2.0e-34 150.2 155 54.2
Mapoly0021s0017 Marchantia polymorpha HOM05D004550 ORTHO05D005340 7.5e-34 148.3 102 76.5
SMO356G0701 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 1.4e-32 144.1 134 61.2
SMO141G0150 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 2.0e-31 140.2 148 50.7
Pp3c9_20530 Physcomitrium patens HOM05D004550 ORTHO05D005340 3.8e-30 136.0 132 56.1
arahy.Tifrunner.gnm1.ann1.QAIU0T Arachis hypogaea HOM05D004550 ORTHO05D005340 9.2e-24 114.8 82 67.1
BcaC08g45895 Brassica carinata HOM05D004550 ORTHO05D005340 2.9e-22 109.8 69 81.2
C06p37000 Brassica napus HOM05D004550 ORTHO05D005340 9.8e-18 94.7 95 58.9
BolC6t38810H Brassica oleracea HOM05D004550 ORTHO05D005340 9.8e-18 94.7 95 58.9
BcaB03g15467 Brassica carinata HOM05D004550 ORTHO05D005340 4.1e-16 89.4 64 73.4
PRCOL_00005365 Prasinoderma coloniale HOM05D004550 ORTHO05D005340 1.6e-15 87.4 133 35.3
Potri.017G088401 Populus trichocarpa HOM05D004550 ORTHO05D005340 3.5e-15 86.3 63 65.1
Cre17.g720350 Chlamydomonas reinhardtii HOM05D004550 ORTHO05D005340 5.9e-15 85.5 102 43.1
MCO05G609 Micromonas commoda HOM05D004550 ORTHO05D005340 6.2e-12 75.5 104 40.4


User provided reference genes

Program Settings