Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G03464 Aquilegia oxysepala HOM05D004542 ORTHO05D005380 2.4e-74 282.0 131 100.0
TAR622G0172 Trochodendron aralioides HOM05D004542 ORTHO05D005380 2.1e-41 172.6 132 62.1
Nn3g17306 Nelumbo nucifera HOM05D004542 ORTHO05D005380 6.6e-40 167.5 131 60.3
PSO063G3361 Papaver somniferum HOM05D004542 ORTHO05D005380 2.8e-38 162.2 130 63.8
Nn3g18387 Nelumbo nucifera HOM05D004542 ORTHO05D005380 1.1e-37 160.2 131 58.0
TWI09G1372 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 5.3e-37 157.9 135 61.5
TWI73G0467 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 2.2e-35 152.5 138 58.0
CDE04G0708 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 1.4e-34 149.8 131 56.5
Ciclev10033055m.g Citrus clementina HOM05D004542 ORTHO05D005380 9.3e-34 147.1 129 57.4
THA.LOC104808670 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 9.3e-34 147.1 129 55.8
Carub.0001s2428 Capsella rubella HOM05D004542 ORTHO05D005380 3.5e-33 145.2 140 57.1
Manes.01G033600 Manihot esculenta HOM05D004542 ORTHO05D005380 6.0e-33 144.4 141 55.3
Thecc.02G341300 Theobroma cacao HOM05D004542 ORTHO05D005380 3.0e-32 142.1 130 56.2
Dinv07945 Davidia involucrata HOM05D004542 ORTHO05D005380 3.9e-32 141.7 124 58.1
Duzib248G0510 Durio zibethinus HOM05D004542 ORTHO05D005380 3.9e-32 141.7 130 56.2
MD04G1010200 Malus domestica HOM05D004542 ORTHO05D005380 5.1e-32 141.4 135 54.8
Prupe.1G009500 Prunus persica HOM05D004542 ORTHO05D005380 5.1e-32 141.4 130 55.4
AT1G26740 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 6.6e-32 141.0 129 58.1
AL1G38970 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 8.7e-32 140.6 129 58.1
CSS0014017 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 1.9e-31 139.4 130 56.2
CSS0031140 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 1.9e-31 139.4 130 56.2
RcHm_v2.0_Chr4g0415001 Rosa chinensis HOM05D004542 ORTHO05D005380 1.9e-31 139.4 127 53.5
Duzib251G0803 Durio zibethinus HOM05D004542 ORTHO05D005380 3.3e-31 138.7 130 54.6
C07p19550 Brassica napus HOM05D004542 ORTHO05D005380 4.3e-31 138.3 137 54.0
BolC7t42472H Brassica oleracea HOM05D004542 ORTHO05D005380 4.3e-31 138.3 137 54.0
Cfa004898 Carpinus fangiana HOM05D004542 ORTHO05D005380 4.3e-31 138.3 131 57.3
BcaC06g35127 Brassica carinata HOM05D004542 ORTHO05D005380 5.6e-31 137.9 131 54.2
A07p13070 Brassica napus HOM05D004542 ORTHO05D005380 5.6e-31 137.9 139 53.2
CANSAT21G2357 Cannabis sativa HOM05D004542 ORTHO05D005380 5.6e-31 137.9 127 58.3
BraA07t29078Z Brassica rapa HOM05D004542 ORTHO05D005380 7.4e-31 137.5 139 52.5
Atru.chr11.1738 Acer truncatum HOM05D004542 ORTHO05D005380 1.3e-30 136.7 125 56.8
MBI02_g20485_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 1.3e-30 136.7 124 55.6
Sp5g24560 Schrenkiella parvula HOM05D004542 ORTHO05D005380 1.6e-30 136.3 131 54.2
AL2G28600 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 2.1e-30 136.0 141 52.5
CDE07G0585 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 2.8e-30 135.6 130 53.1
Cc00_g16630 Coffea canephora HOM05D004542 ORTHO05D005380 2.8e-30 135.6 126 60.3
Potri.010G165100 Populus trichocarpa HOM05D004542 ORTHO05D005380 2.8e-30 135.6 139 53.2
Potri.008G090100 Populus trichocarpa HOM05D004542 ORTHO05D005380 3.6e-30 135.2 139 52.5
BcaB03g14086 Brassica carinata HOM05D004542 ORTHO05D005380 4.8e-30 134.8 129 54.3
CARHR025220 Cardamine hirsuta HOM05D004542 ORTHO05D005380 4.8e-30 134.8 129 55.8
Cpa.g.sc69.70 Carica papaya HOM05D004542 ORTHO05D005380 4.8e-30 134.8 137 52.6
FAN07G0300 Fragaria x ananassa HOM05D004542 ORTHO05D005380 6.2e-30 134.4 123 53.7
Actinidia17747 Actinidia chinensis HOM05D004542 ORTHO05D005380 1.1e-29 133.7 129 56.6
Sc03g0001820 Simmondsia chinensis HOM05D004542 ORTHO05D005380 1.4e-29 133.3 122 56.6
THA.LOC104822040 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 1.4e-29 133.3 138 52.9
Thhalv10009076m.g Eutrema salsugineum HOM05D004542 ORTHO05D005380 2.4e-29 132.5 128 53.9
FvH4_4g13880 Fragaria vesca HOM05D004542 ORTHO05D005380 2.4e-29 132.5 124 52.4
FAN12G3669 Fragaria x ananassa HOM05D004542 ORTHO05D005380 2.4e-29 132.5 124 52.4
RcHm_v2.0_Chr6g0251041 Rosa chinensis HOM05D004542 ORTHO05D005380 3.1e-29 132.1 132 55.3
Actinidia31969 Actinidia chinensis HOM05D004542 ORTHO05D005380 6.9e-29 131.0 129 54.3
Aa31LG7G8390 Aethionema arabicum HOM05D004542 ORTHO05D005380 6.9e-29 131.0 129 52.7
FAN22G1961 Fragaria x ananassa HOM05D004542 ORTHO05D005380 6.9e-29 131.0 124 52.4
PGR083G2602 Punica granatum HOM05D004542 ORTHO05D005380 6.9e-29 131.0 133 51.1
Sc14g0007580 Simmondsia chinensis HOM05D004542 ORTHO05D005380 6.9e-29 131.0 123 57.7
C05p24230 Brassica napus HOM05D004542 ORTHO05D005380 1.2e-28 130.2 131 52.7
BolC5t31159H Brassica oleracea HOM05D004542 ORTHO05D005380 1.5e-28 129.8 131 52.7
BraA09t39513Z Brassica rapa HOM05D004542 ORTHO05D005380 2.6e-28 129.0 131 51.1
Migut.L01259 Erythranthe guttata HOM05D004542 ORTHO05D005380 2.6e-28 129.0 137 54.0
A09p40150 Brassica napus HOM05D004542 ORTHO05D005380 7.6e-28 127.5 131 50.4
Gohir.A07G047800 Gossypium hirsutum HOM05D004542 ORTHO05D005380 1.3e-27 126.7 138 52.9
Gohir.D07G052100 Gossypium hirsutum HOM05D004542 ORTHO05D005380 1.3e-27 126.7 138 52.2
Nitab4.5_0013306g0010 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.3e-27 126.7 134 53.7
CiPaw.06G087700 Carya illinoinensis HOM05D004542 ORTHO05D005380 1.7e-27 126.3 116 56.0
Glyma.05G118100 Glycine max HOM05D004542 ORTHO05D005380 1.7e-27 126.3 130 53.1
Nitab4.5_0000391g0330 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.7e-27 126.3 117 59.0
BcaC05g26392 Brassica carinata HOM05D004542 ORTHO05D005380 2.2e-27 125.9 131 51.9
Glyma.08G073000 Glycine max HOM05D004542 ORTHO05D005380 2.2e-27 125.9 131 51.1
Gorai.001G055100 Gossypium raimondii HOM05D004542 ORTHO05D005380 2.2e-27 125.9 140 51.4
Peaxi162Scf00222g00329 Petunia axillaris HOM05D004542 ORTHO05D005380 2.9e-27 125.6 132 53.0
MSTRG.2336 Avicennia marina HOM05D004542 ORTHO05D005380 3.8e-27 125.2 126 54.8
QL05p050003 Quercus lobata HOM05D004542 ORTHO05D005380 4.9e-27 124.8 137 54.0
RcHm_v2.0_Chr4g0414951 Rosa chinensis HOM05D004542 ORTHO05D005380 8.4e-27 124.0 129 49.6
CsaV3_5G032980 Cucumis sativus L. HOM05D004542 ORTHO05D005380 1.1e-26 123.6 130 51.5
TPR.G5742 Trifolium pratense HOM05D004542 ORTHO05D005380 1.4e-26 123.2 124 54.0
Lsat_1_v5_gn_8_48901 Lactuca sativa HOM05D004542 ORTHO05D005380 1.9e-26 122.9 115 56.5
Hma1.2p1_0357F.1_g134240 Hydrangea macrophylla HOM05D004542 ORTHO05D005380 2.4e-26 122.5 87 70.1
Sabra08G0067500 Salix brachista HOM05D004542 ORTHO05D005380 2.4e-26 122.5 151 47.7
Cpa.g.sc57.38 Carica papaya HOM05D004542 ORTHO05D005380 3.2e-26 122.1 108 59.3
PSO782G1969 Papaver somniferum HOM05D004542 ORTHO05D005380 3.2e-26 122.1 106 62.3
Lalb_Chr10g0097781 Lupinus albus HOM05D004542 ORTHO05D005380 4.2e-26 121.7 122 52.5
Peaxi162Scf00023g02531 Petunia axillaris HOM05D004542 ORTHO05D005380 4.2e-26 121.7 129 52.7
Psat0s1693g0080 Pisum sativum HOM05D004542 ORTHO05D005380 9.3e-26 120.6 123 49.6
ECA233G6069 Erigeron canadensis HOM05D004542 ORTHO05D005380 1.2e-25 120.2 114 57.9
Phvul.002G208200 Phaseolus vulgaris HOM05D004542 ORTHO05D005380 1.2e-25 120.2 70 75.7
Ca_18347_v3 Cicer arietinum L. HOM05D004542 ORTHO05D005380 1.6e-25 119.8 121 51.2
arahy.Tifrunner.gnm1.ann1.53F0XR Arachis hypogaea HOM05D004542 ORTHO05D005380 2.1e-25 119.4 127 52.8
arahy.Tifrunner.gnm1.ann1.H527P9 Arachis hypogaea HOM05D004542 ORTHO05D005380 2.1e-25 119.4 127 52.8
Eucgr.D00185 Eucalyptus grandis HOM05D004542 ORTHO05D005380 2.1e-25 119.4 89 64.0
HanXRQChr12g0361941 Helianthus annuus HOM05D004542 ORTHO05D005380 3.5e-25 118.6 104 61.5
AUR62031723 Chenopodium quinoa HOM05D004542 ORTHO05D005380 6.0e-25 117.9 122 52.5
ClCG05G024060 Citrullus lanatus HOM05D004542 ORTHO05D005380 7.9e-25 117.5 98 57.1
ECA246G0207 Erigeron canadensis HOM05D004542 ORTHO05D005380 7.9e-25 117.5 127 48.8
SalBow1G8597 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.0e-24 117.1 113 53.1
EL10Ac2g02750 Beta vulgaris HOM05D004542 ORTHO05D005380 1.8e-24 116.3 111 53.2
Solyc05g013190.4 Solanum lycopersicum HOM05D004542 ORTHO05D005380 1.8e-24 116.3 116 55.2
VMungo0251G2924 Vigna mungo HOM05D004542 ORTHO05D005380 2.3e-24 115.9 70 74.3
Solyc04g005590.3 Solanum lycopersicum HOM05D004542 ORTHO05D005380 3.0e-24 115.5 134 50.0
Sopen05g007930 Solanum pennellii HOM05D004542 ORTHO05D005380 3.0e-24 115.5 115 53.9
MELO3C012119.2 Cucumis melo HOM05D004542 ORTHO05D005380 3.9e-24 115.2 128 49.2
HanXRQChr15g0476941 Helianthus annuus HOM05D004542 ORTHO05D005380 3.9e-24 115.2 124 51.6
Glyma.06G320500 Glycine max HOM05D004542 ORTHO05D005380 5.1e-24 114.8 97 58.8
Sed0021036 Sechium edule HOM05D004542 ORTHO05D005380 5.1e-24 114.8 99 55.6
PGSC0003DMG400002854 Solanum tuberosum HOM05D004542 ORTHO05D005380 5.1e-24 114.8 134 50.0
Lj4g0012875 Lotus japonicus HOM05D004542 ORTHO05D005380 8.7e-24 114.0 120 51.7
Oeu001710.1 Olea europaea HOM05D004542 ORTHO05D005380 8.7e-24 114.0 124 53.2
Medtr1g025320 Medicago truncatula HOM05D004542 ORTHO05D005380 3.3e-23 112.1 63 77.8
Sopen04g001630 Solanum pennellii HOM05D004542 ORTHO05D005380 3.3e-23 112.1 115 53.9
Os10g0407100 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 4.3e-23 111.7 78 65.4
Ah.08g212630 Amaranthus hybridus HOM05D004542 ORTHO05D005380 5.6e-23 111.3 101 57.4
SalBow1G4390 Salvia bowleyana HOM05D004542 ORTHO05D005380 5.6e-23 111.3 103 52.4
SalBow1G7833 Salvia bowleyana HOM05D004542 ORTHO05D005380 2.1e-22 109.4 95 55.8
Lj4g0007672 Lotus japonicus HOM05D004542 ORTHO05D005380 1.1e-21 107.1 123 52.0
Os03g0168900 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 1.1e-21 107.1 62 74.2
Hund04421 Selenicereus undatus HOM05D004542 ORTHO05D005380 1.1e-21 107.1 107 51.4
Zm00001eb402400 Zea mays HOM05D004542 ORTHO05D005380 1.1e-21 107.1 63 73.0
AT1G69485 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 1.4e-21 106.7 63 76.2
TPR.G8852 Trifolium pratense HOM05D004542 ORTHO05D005380 5.3e-21 104.8 57 78.9
DCAR_027429 Daucus carota HOM05D004542 ORTHO05D005380 1.5e-20 103.2 177 38.4
SGA_v2.0_scaffold455G51899 Striga asiatica HOM05D004542 ORTHO05D005380 2.0e-20 102.8 103 55.3
CANSAT21G0056 Cannabis sativa HOM05D004542 ORTHO05D005380 4.5e-20 101.7 110 53.6
SalBow1G1756 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.0e-19 100.5 61 70.5
AUR62032610 Chenopodium quinoa HOM05D004542 ORTHO05D005380 3.8e-19 98.6 156 40.4
Haze_11968 Corylus avellana HOM05D004542 ORTHO05D005380 3.8e-19 98.6 105 52.4
Manes.05G105400 Manihot esculenta HOM05D004542 ORTHO05D005380 1.1e-18 97.1 117 47.9
Sp1g22070 Schrenkiella parvula HOM05D004542 ORTHO05D005380 1.9e-18 96.3 114 48.2
Ciclev10013639m.g Citrus clementina HOM05D004542 ORTHO05D005380 3.2e-18 95.5 131 44.3
Rhsim05G0092000 Rhododendron simsii HOM05D004542 ORTHO05D005380 5.5e-18 94.7 112 48.2
RhsimUnG0183400 Rhododendron simsii HOM05D004542 ORTHO05D005380 5.5e-18 94.7 112 48.2
COL.COLO4_32021 Corchorus olitorius HOM05D004542 ORTHO05D005380 1.2e-17 93.6 106 50.0
Oeu054854.1 Olea europaea HOM05D004542 ORTHO05D005380 2.1e-17 92.8 108 50.9
Sopen03g017060 Solanum pennellii HOM05D004542 ORTHO05D005380 1.0e-16 90.5 61 68.9
Carub.0002s1610 Capsella rubella HOM05D004542 ORTHO05D005380 5.1e-16 88.2 52 69.2
MBI02_g44667_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 1.1e-15 87.0 102 48.0
MD13G1284400 Malus domestica HOM05D002269 ORTHO05D005380 1.5e-15 86.7 72 59.7
Nitab4.5_0001077g0020 Nicotiana tabacum HOM05D004542 ORTHO05D005380 5.7e-15 84.7 80 55.0
Mapoly0152s0024 Marchantia polymorpha HOM05D004542 ORTHO05D005380 2.1e-14 82.8 70 54.3
AagrBONN_evm.TU.Sc2ySwM_228.5417 Anthoceros agrestis HOM05D004542 ORTHO05D005380 2.8e-14 82.4 93 48.4
Pp3c1_32410 Physcomitrium patens HOM05D004542 ORTHO05D005380 4.8e-14 81.6 119 37.0
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 1.8e-13 79.7 50 64.0
SMO358G0607 Selaginella moellendorffii HOM05D000228 ORTHO05D005112 4.1e-13 78.6 49 69.4
Glyma.04G115800 Glycine max HOM05D004542 ORTHO05D005380 1.5e-12 76.6 75 57.3
Zm00001eb005320 Zea mays HOM05D004542 ORTHO05D005380 1.7e-11 73.2 71 52.1
COL.COLO4_27991 Corchorus olitorius HOM05D004542 ORTHO05D005380 8.7e-08 60.8 102 42.2
Sabra10G0125700 Salix brachista HOM05D004542 ORTHO05D005380 5.7e-07 58.2 95 41.1
unitig_8.g3954 Utricularia gibba HOM05D006796 ORTHO05D008615 3.7e-06 55.5 37 67.6
MCO02G272 Micromonas commoda HOM05D004542 ORTHO05D005380 8.2e-06 54.3 50 48.0


User provided reference genes

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