Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G03442 Aquilegia oxysepala HOM05D006569 ORTHO05D007515 0.0e+00 1484.5 1285 100.0
TAR371G0591 Trochodendron aralioides HOM05D006569 ORTHO05D007515 4.7e-215 752.7 822 58.3
PSO013G0141 Papaver somniferum HOM05D006569 ORTHO05D007515 2.5e-184 650.6 790 56.2
PSO832G0544 Papaver somniferum HOM05D006569 ORTHO05D007515 4.8e-183 646.4 793 55.5
Dinv33774 Davidia involucrata HOM05D006569 ORTHO05D007515 1.0e-177 628.6 733 54.7
Rhsim10G0036300 Rhododendron simsii HOM05D006569 ORTHO05D007515 2.2e-167 594.3 768 48.4
CSS0028247 Camellia sinensis var. sinensis HOM05D006569 ORTHO05D007515 8.2e-167 592.4 774 51.8
CiPaw.04G004700 Carya illinoinensis HOM05D006569 ORTHO05D007515 7.7e-165 585.9 742 50.8
GSVIVG01011442001 Vitis vinifera HOM05D006569 ORTHO05D007515 7.7e-165 585.9 747 51.9
Atru.chr8.291 Acer truncatum HOM05D006569 ORTHO05D007515 4.2e-163 580.1 742 49.9
Manes.01G092900 Manihot esculenta HOM05D006569 ORTHO05D007515 4.2e-163 580.1 766 48.6
Prupe.3G265200 Prunus persica HOM05D006569 ORTHO05D007515 7.2e-163 579.3 752 48.7
QL02p053824 Quercus lobata HOM05D006569 ORTHO05D007515 8.8e-161 572.4 673 53.2
Potri.017G086000 Populus trichocarpa HOM05D006569 ORTHO05D007515 1.1e-160 572.0 740 46.8
MD09G1053400 Malus domestica HOM05D006569 ORTHO05D007515 4.8e-159 566.6 766 48.6
FAN05G0252 Fragaria x ananassa HOM05D006569 ORTHO05D007515 5.0e-156 556.6 747 49.7
FAN14G1478 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.4e-155 555.1 732 49.0
Lju41C9T14 Lonicera japonica HOM05D006569 ORTHO05D007515 5.5e-155 553.1 741 48.2
Sabra17G0075800 Salix brachista HOM05D006569 ORTHO05D007515 7.9e-154 549.3 739 44.2
FAN02G1154 Fragaria x ananassa HOM05D006569 ORTHO05D007515 2.0e-152 544.7 734 48.6
Cpa.g.sc14.98 Carica papaya HOM05D006569 ORTHO05D007515 1.3e-151 542.0 755 48.1
Haze_14089 Corylus avellana HOM05D006569 ORTHO05D007515 1.7e-151 541.6 641 56.6
Oeu010220.1 Olea europaea HOM05D006569 ORTHO05D007515 7.7e-149 532.7 789 45.9
Ciclev10013587m.g Citrus clementina HOM05D006569 ORTHO05D007515 1.0e-148 532.3 751 49.4
Sopen02g016380 Solanum pennellii HOM05D006569 ORTHO05D007515 6.5e-148 529.6 706 39.0
PGSC0003DMG400025133 Solanum tuberosum HOM05D006569 ORTHO05D007515 8.5e-148 529.3 704 38.8
Cfa007985 Carpinus fangiana HOM05D006569 ORTHO05D007515 2.5e-147 527.7 662 53.6
Solyc02g067200.4 Solanum lycopersicum HOM05D006569 ORTHO05D007515 3.2e-147 527.3 706 39.0
Cc07_g03540 Coffea canephora HOM05D006569 ORTHO05D007515 2.3e-145 521.2 766 45.4
CANSAT64G0455 Cannabis sativa HOM05D006569 ORTHO05D007515 4.0e-145 520.4 760 42.2
Peaxi162Scf00011g00263 Petunia axillaris HOM05D006569 ORTHO05D007515 3.3e-144 517.3 743 37.7
Nitab4.5_0000212g0030 Nicotiana tabacum HOM05D006569 ORTHO05D007515 2.8e-143 514.2 731 39.4
Nitab4.5_0003653g0010 Nicotiana tabacum HOM05D006569 ORTHO05D007515 2.8e-143 514.2 731 37.5
SGA_v2.0_scaffold236G43766 Striga asiatica HOM05D006569 ORTHO05D007515 6.3e-143 513.1 723 45.8
Duzib264G1306 Durio zibethinus HOM05D006569 ORTHO05D007515 2.4e-142 511.1 641 54.4
DCAR_021661 Daucus carota HOM05D006569 ORTHO05D007515 4.1e-142 510.4 743 45.6
Eucgr.I01955 Eucalyptus grandis HOM05D006569 ORTHO05D007515 6.5e-140 503.1 746 46.4
CAN.G1103.13 Capsicum annuum HOM05D006569 ORTHO05D007515 1.9e-139 501.5 732 41.7
TWI60G0939 Tripterygium wilfordii HOM05D006569 ORTHO05D007515 1.2e-138 498.8 787 44.2
FAN09G2200 Fragaria x ananassa HOM05D006569 ORTHO05D007515 2.1e-138 498.0 734 46.7
THA.LOC104822352 Tarenaya hassleriana HOM05D006569 ORTHO05D007515 5.2e-137 493.4 697 43.3
AUR62018101 Chenopodium quinoa HOM05D006569 ORTHO05D007515 6.3e-135 486.5 784 39.3
Hund15592 Selenicereus undatus HOM05D006569 ORTHO05D007515 2.7e-133 481.1 725 46.2
AUR62034434 Chenopodium quinoa HOM05D006569 ORTHO05D007515 4.5e-133 480.3 777 38.9
ClCG09G010340 Citrullus lanatus HOM05D006569 ORTHO05D007515 5.9e-133 479.9 732 48.0
CsaV3_7G024320 Cucumis sativus L. HOM05D006569 ORTHO05D007515 1.7e-132 478.4 732 47.5
SalBow6G2371 Salvia bowleyana HOM05D006569 ORTHO05D007515 1.7e-132 478.4 736 47.0
MBI05_g41591_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 2.3e-132 478.0 796 45.1
Carub.0006s1347 Capsella rubella HOM05D006569 ORTHO05D007515 5.0e-132 476.9 706 46.6
Sc10g0003480 Simmondsia chinensis HOM05D006569 ORTHO05D007515 2.5e-131 474.6 743 40.6
Lalb_Chr15g0081471 Lupinus albus HOM05D006569 ORTHO05D007515 1.2e-130 472.2 743 43.9
Sed0017024 Sechium edule HOM05D006569 ORTHO05D007515 2.1e-130 471.5 724 47.2
MELO3C023650.2 Cucumis melo HOM05D006569 ORTHO05D007515 3.6e-130 470.7 732 47.4
AT5G15280 Arabidopsis thaliana HOM05D006569 ORTHO05D007515 2.3e-129 468.0 697 44.3
RcHm_v2.0_Chr2g0167491 Rosa chinensis HOM05D006569 ORTHO05D007515 5.2e-129 466.8 725 45.2
Sp6g28790 Schrenkiella parvula HOM05D006569 ORTHO05D007515 1.5e-128 465.3 736 46.9
FvH4_6g48150 Fragaria vesca HOM05D006569 ORTHO05D007515 2.2e-127 461.5 621 49.8
arahy.Tifrunner.gnm1.ann1.80L4ZA Arachis hypogaea HOM05D006569 ORTHO05D007515 2.8e-127 461.1 722 40.7
AL6G26150 Arabidopsis lyrata HOM05D006569 ORTHO05D007515 4.9e-127 460.3 697 40.5
CARHR198030 Cardamine hirsuta HOM05D006569 ORTHO05D007515 3.8e-124 450.7 697 44.8
Lsat_1_v5_gn_2_89461 Lactuca sativa HOM05D006569 ORTHO05D007515 2.5e-123 448.0 764 42.1
PGR004G0299 Punica granatum HOM05D006569 ORTHO05D007515 2.1e-122 444.9 718 44.4
Migut.K01310 Erythranthe guttata HOM05D006569 ORTHO05D007515 1.0e-121 442.6 812 42.9
Thhalv10012473m.g Eutrema salsugineum HOM05D006569 ORTHO05D007515 2.6e-120 438.0 724 45.4
EL10Ac2g03001 Beta vulgaris HOM05D006569 ORTHO05D007515 7.5e-120 436.4 762 43.3
TPR.G33795 Trifolium pratense HOM05D006569 ORTHO05D007515 1.1e-118 432.6 701 45.4
BcaNung03317 Brassica carinata HOM05D006569 ORTHO05D007515 5.4e-118 430.3 710 45.4
Ah.10g031720 Amaranthus hybridus HOM05D006569 ORTHO05D007515 2.7e-117 427.9 721 43.7
BcaC03g13417 Brassica carinata HOM05D006569 ORTHO05D007515 2.5e-115 421.4 698 41.4
BolC2t06696H Brassica oleracea HOM05D006569 ORTHO05D007515 2.5e-115 421.4 698 41.5
C02p07640 Brassica napus HOM05D006569 ORTHO05D007515 3.3e-115 421.0 698 41.4
Lj6g0009481 Lotus japonicus HOM05D006569 ORTHO05D007515 7.3e-115 419.9 698 42.7
MSTRG.15471 Avicennia marina HOM05D006569 ORTHO05D007515 1.6e-114 418.7 717 45.7
Psat5g175080 Pisum sativum HOM05D006569 ORTHO05D007515 6.8e-113 413.3 701 44.9
BraA02t05270Z Brassica rapa HOM05D006569 ORTHO05D007515 8.9e-113 412.9 697 40.9
HPP92_012798 Vanilla planifolia HOM05D006569 ORTHO05D007515 2.6e-112 411.4 691 34.7
Medtr3g053000 Medicago truncatula HOM05D006569 ORTHO05D007515 3.7e-111 407.5 700 41.3
Zm00001eb005280 Zea mays HOM05D006569 ORTHO05D007515 4.9e-111 407.1 801 31.8
ATR1145G048 Amborella trichopoda HOM05D006569 ORTHO05D007515 1.5e-107 395.6 702 44.9
Aa31LG11G14260 Aethionema arabicum HOM05D006569 ORTHO05D007515 1.1e-102 379.4 563 50.8
MBI05_g10764_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 1.0e-100 372.9 742 33.2
CDE04G0154 Ceratophyllum demersum HOM05D006569 ORTHO05D007515 2.3e-100 371.7 619 32.6
ECA238G4289 Erigeron canadensis HOM05D006569 ORTHO05D007515 5.6e-99 367.1 620 42.4
HanXRQChr07g0199321 Helianthus annuus HOM05D006569 ORTHO05D007515 1.2e-96 359.4 895 26.8
A02p02990 Brassica napus HOM05D006569 ORTHO05D007515 4.7e-90 337.4 734 38.8
Glyma.18G093100 Glycine max HOM05D006569 ORTHO05D007515 2.0e-88 332.0 700 39.1
VMungo0540G0528 Vigna mungo HOM05D006569 ORTHO05D007515 2.0e-88 332.0 701 39.1
Ca_14754_v3 Cicer arietinum L. HOM05D006569 ORTHO05D007515 3.8e-87 327.8 622 43.7
FAN09G3888 Fragaria x ananassa HOM05D006569 ORTHO05D007515 9.3e-86 323.2 570 49.8
COL.COLO4_10330 Corchorus olitorius HOM05D006569 ORTHO05D007515 1.9e-78 298.9 319 45.1
FvH4_6g47953 Fragaria vesca HOM05D006569 ORTHO05D007515 6.5e-63 247.3 353 56.4
FAN05G1756 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.1e-62 246.5 346 61.6
FAN09G1632 Fragaria x ananassa HOM05D006569 ORTHO05D007515 3.2e-54 218.4 256 45.3
RcHm_v2.0_Chr2g0167581 Rosa chinensis HOM05D006569 ORTHO05D007515 3.9e-52 211.5 226 48.7
RcHm_v2.0_Chr2g0167571 Rosa chinensis HOM05D006569 ORTHO05D007515 8.5e-47 193.7 201 50.2
Thecc.04G085700 Theobroma cacao HOM05D006569 ORTHO05D007515 1.0e-44 186.8 212 45.8
QL02p057930 Quercus lobata HOM05D006569 ORTHO05D007515 1.4e-44 186.4 539 27.6
QL93p0100_0341 Quercus lobata HOM05D006569 ORTHO05D007515 5.7e-43 181.0 550 27.6
QL08p010038 Quercus lobata HOM05D006569 ORTHO05D007515 8.5e-39 167.2 487 38.8
FvH4_6g48880 Fragaria vesca HOM05D006569 ORTHO05D007515 2.0e-35 156.0 180 45.0
Phvul.006G046500 Phaseolus vulgaris HOM05D006569 ORTHO05D007515 8.8e-28 130.6 103 56.3
FvH4_6g47954 Fragaria vesca HOM05D006569 ORTHO05D007515 6.3e-26 124.4 144 43.8
FAN14G0320 Fragaria x ananassa HOM05D006569 ORTHO05D007515 6.3e-26 124.4 144 43.8
SEGI_17455 Sequoiadendron giganteum HOM05D006569 ORTHO05D007515 1.2e-24 120.2 525 37.5
MBI05_g36424_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 1.5e-19 103.2 243 32.9
ATR0974G001 Amborella trichopoda HOM05D006569 ORTHO05D007515 3.5e-16 92.0 91 46.2
HPP92_012677 Vanilla planifolia HOM05D006569 ORTHO05D007515 2.1e-13 82.8 165 26.1
FAN05G1232 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.4e-12 80.1 120 37.5
Thecc.04G085800 Theobroma cacao HOM05D006569 ORTHO05D007515 3.0e-12 79.0 202 29.2
Glyma.08G319450 Glycine max HOM05D006569 ORTHO05D007515 2.0e-11 76.3 91 40.7
HanXRQChr16g0524351 Helianthus annuus HOM05D006569 ORTHO05D007515 4.4e-11 75.1 92 35.9
Nitab4.5_0000846g0020 Nicotiana tabacum HOM05D006556 ORTHO05D008146 7.0e-09 67.8 268 20.5
FAN09G4849 Fragaria x ananassa HOM05D006569 ORTHO05D007515 9.2e-09 67.4 78 47.4
Prupe.2G066000 Prunus persica HOM05D006556 ORTHO05D008146 1.6e-08 66.6 240 21.7
C08p24760 Brassica napus HOM05D000424 ORTHO05D000355 2.0e-08 66.2 221 25.8
Lj1P662T20 Lonicera japonica HOM05D004783 ORTHO05D005581 2.0e-08 66.2 255 24.7
Actinidia01760 Actinidia chinensis HOM05D006819 ORTHO05D008763 4.5e-08 65.1 152 28.3
Lsat_1_v5_gn_1_46480 Lactuca sativa HOM05D001126 ORTHO05D000991 4.5e-08 65.1 80 41.2
BolC8t50090H Brassica oleracea HOM05D000424 ORTHO05D000355 5.9e-08 64.7 221 25.3
Ciclev10030383m.g Citrus clementina HOM05D000855 ORTHO05D000003 7.8e-08 64.3 221 23.5
TWI75G1155 Tripterygium wilfordii HOM05D004783 ORTHO05D005581 1.7e-07 63.2 254 24.4
Lsat_1_v5_gn_2_76721 Lactuca sativa HOM05D000891 ORTHO05D000761 2.3e-07 62.8 262 21.8
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 2.9e-07 62.4 222 20.7
Haze_02747 Corylus avellana HOM05D000104 ORTHO05D009920 5.0e-07 61.6 155 27.1
CANSAT56G4335 Cannabis sativa HOM05D004783 ORTHO05D005581 6.6e-07 61.2 256 25.8
Ca_17333_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 1.1e-06 60.5 115 27.0
DCAR_009464 Daucus carota HOM05D000104 ORTHO05D009920 1.1e-06 60.5 258 23.3
A06p17960 Brassica napus HOM05D000424 ORTHO05D000355 1.5e-06 60.1 238 23.1
BraA06t24887Z Brassica rapa HOM05D000424 ORTHO05D000355 1.5e-06 60.1 238 23.1
CARHR109130 Cardamine hirsuta HOM05D000891 ORTHO05D000761 1.9e-06 59.7 231 21.2
Glyma.14G039600 Glycine max HOM05D004783 ORTHO05D005581 1.9e-06 59.7 254 23.2
CDE09G0095 Ceratophyllum demersum HOM05D006232 ORTHO05D007746 2.5e-06 59.3 192 28.1
Glyma.02G276200 Glycine max HOM05D004783 ORTHO05D005581 3.3e-06 58.9 254 23.2
SHI00355 Sapria himalayana HOM05D007340 ORTHO05D008979 3.3e-06 58.9 195 24.1
Nitab4.5_0001056g0080 Nicotiana tabacum HOM05D006556 ORTHO05D008146 4.3e-06 58.5 242 19.8
BcaC03g13436 Brassica carinata HOM05D000424 ORTHO05D000355 5.6e-06 58.2 221 21.3
C02p07450 Brassica napus HOM05D000424 ORTHO05D000355 5.6e-06 58.2 221 21.3
BolC2t06676H Brassica oleracea HOM05D000424 ORTHO05D000355 5.6e-06 58.2 221 21.3
CSS0009024 Camellia sinensis var. sinensis HOM05D007956 ORTHO05D009038 5.6e-06 58.2 266 21.1
CARHR245040 Cardamine hirsuta HOM05D000891 ORTHO05D000761 5.6e-06 58.2 246 20.3
Cfa010144 Carpinus fangiana HOM05D004783 ORTHO05D005581 5.6e-06 58.2 258 22.1
SEGI_00853 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 5.6e-06 58.2 232 23.3
arahy.Tifrunner.gnm1.ann1.44AK4G Arachis hypogaea HOM05D000424 ORTHO05D000355 7.3e-06 57.8 239 22.2
MD15G1265700 Malus domestica HOM05D000891 ORTHO05D000761 7.3e-06 57.8 203 19.2
Psat3g098480 Pisum sativum HOM05D008684 ORTHO05D010796 7.3e-06 57.8 182 23.6
Prupe.2G122500 Prunus persica HOM05D000104 ORTHO05D009920 7.3e-06 57.8 146 27.4
QL04p034761 Quercus lobata HOM05D000104 ORTHO05D009920 7.3e-06 57.8 155 26.5
SGA_v2.0_scaffold32G13359 Striga asiatica HOM05D005622 ORTHO05D002854 7.3e-06 57.8 214 22.4
Thecc.04G015500 Theobroma cacao HOM05D004783 ORTHO05D005581 7.3e-06 57.8 251 22.7
CsaV3_1G012580 Cucumis sativus L. HOM05D002986 ORTHO05D007611 9.5e-06 57.4 168 25.6
Nn1g09793 Nelumbo nucifera HOM05D002453 ORTHO05D002107 9.5e-06 57.4 209 24.4


User provided reference genes

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