Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G03429 Aquilegia oxysepala HOM05D004915 ORTHO05D006048 2.0e-175 619.0 308 100.0
TAR622G0868 Trochodendron aralioides HOM05D004915 ORTHO05D006048 1.6e-108 396.7 258 72.1
Thecc.03G090400 Theobroma cacao HOM05D004915 ORTHO05D006048 4.6e-108 395.2 254 73.2
MBI05_g33757_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 5.1e-107 391.7 253 72.3
Actinidia38781 Actinidia chinensis HOM05D004915 ORTHO05D006048 2.5e-106 389.4 264 69.3
PSO478G3309 Papaver somniferum HOM05D004915 ORTHO05D006048 1.3e-105 387.1 265 69.1
COL.COLO4_22946 Corchorus olitorius HOM05D004915 ORTHO05D006048 1.6e-105 386.7 244 73.8
CiPaw.11G045800 Carya illinoinensis HOM05D004915 ORTHO05D006048 3.6e-105 385.6 254 69.7
QL10p017218 Quercus lobata HOM05D004915 ORTHO05D006048 8.1e-105 384.4 254 69.7
MBI05_g35466_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 4.0e-104 382.1 267 68.5
Actinidia38763 Actinidia chinensis HOM05D004915 ORTHO05D006048 6.9e-104 381.3 274 66.8
Dinv37673 Davidia involucrata HOM05D004915 ORTHO05D006048 6.9e-104 381.3 260 70.4
Duzib205G1074 Durio zibethinus HOM05D004915 ORTHO05D006048 9.0e-104 380.9 254 70.5
GSVIVG01007990001 Vitis vinifera HOM05D004915 ORTHO05D006048 9.0e-104 380.9 254 66.9
Oeu058311.1 Olea europaea HOM05D004915 ORTHO05D006048 1.5e-103 380.2 260 67.7
RcHm_v2.0_Chr7g0181591 Rosa chinensis HOM05D004915 ORTHO05D006048 2.2e-102 376.3 258 69.0
Cfa018930 Carpinus fangiana HOM05D004915 ORTHO05D006048 3.8e-102 375.6 254 68.9
Thhalv10027886m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 3.8e-102 375.6 259 66.0
Peaxi162Scf00241g00416 Petunia axillaris HOM05D004915 ORTHO05D006048 8.4e-102 374.4 266 63.2
Eucgr.B00520 Eucalyptus grandis HOM05D004915 ORTHO05D006048 1.4e-101 373.6 254 67.3
Prupe.5G195000 Prunus persica HOM05D004915 ORTHO05D006048 1.9e-101 373.2 254 67.7
TAR374G0666 Trochodendron aralioides HOM05D004915 ORTHO05D006048 3.2e-101 372.5 224 76.3
Sopen06g023800 Solanum pennellii HOM05D004915 ORTHO05D006048 4.2e-101 372.1 255 67.1
Hma1.2p1_0060F.1_g033670 Hydrangea macrophylla HOM05D004915 ORTHO05D006048 5.4e-101 371.7 254 67.7
FvH4_7g07490 Fragaria vesca HOM05D004915 ORTHO05D006048 7.1e-101 371.3 250 69.6
FAN10G0297 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.2e-100 370.5 250 69.2
Lj4A111T68 Lonicera japonica HOM05D004915 ORTHO05D006048 3.5e-100 369.0 272 65.8
Atru.chr8.192 Acer truncatum HOM05D004915 ORTHO05D006048 6.0e-100 368.2 260 66.2
FAN03G1016 Fragaria x ananassa HOM05D004915 ORTHO05D006048 7.9e-100 367.9 250 69.2
MD06G1194800 Malus domestica HOM05D004915 ORTHO05D006048 7.9e-100 367.9 250 68.0
Solyc06g065310.3 Solanum lycopersicum HOM05D004915 ORTHO05D006048 1.0e-99 367.5 255 65.5
Cc04_g16470 Coffea canephora HOM05D004915 ORTHO05D006048 1.3e-99 367.1 262 66.4
PGSC0003DMG400026111 Solanum tuberosum HOM05D004915 ORTHO05D006048 1.3e-99 367.1 247 67.6
Cpa.g.sc179.53 Carica papaya HOM05D004915 ORTHO05D006048 1.8e-99 366.7 258 65.1
Sp7g02320 Schrenkiella parvula HOM05D004915 ORTHO05D006048 1.8e-99 366.7 259 64.1
Oeu037787.1 Olea europaea HOM05D004915 ORTHO05D006048 5.1e-99 365.2 260 65.4
CSS0019190 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 6.7e-99 364.8 254 67.7
Rhsim08G0070400 Rhododendron simsii HOM05D004915 ORTHO05D006048 8.7e-99 364.4 257 65.8
Sp2g17640 Schrenkiella parvula HOM05D004915 ORTHO05D006048 8.7e-99 364.4 260 64.2
Aa31LG2G4180 Aethionema arabicum HOM05D004915 ORTHO05D006048 1.1e-98 364.0 259 65.3
AL5G18870 Arabidopsis lyrata HOM05D004915 ORTHO05D006048 1.1e-98 364.0 260 63.5
Carub.0007s3626 Capsella rubella HOM05D004915 ORTHO05D006048 1.5e-98 363.6 259 63.7
Haze_07314 Corylus avellana HOM05D004915 ORTHO05D006048 1.5e-98 363.6 289 61.6
Potri.017G085100 Populus trichocarpa HOM05D004915 ORTHO05D006048 1.5e-98 363.6 255 66.3
CARHR262560 Cardamine hirsuta HOM05D004915 ORTHO05D006048 2.5e-98 362.8 254 66.1
ECA246G2050 Erigeron canadensis HOM05D004915 ORTHO05D006048 3.3e-98 362.5 254 65.0
Aa31LG9G16420 Aethionema arabicum HOM05D004915 ORTHO05D006048 4.3e-98 362.1 259 64.5
Thhalv10005292m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 5.6e-98 361.7 260 63.8
SGA_v2.0_scaffold17G08101 Striga asiatica HOM05D004915 ORTHO05D006048 5.6e-98 361.7 263 63.1
FAN04G1144 Fragaria x ananassa HOM05D004915 ORTHO05D006048 9.6e-98 360.9 259 66.8
Manes.01G092400 Manihot esculenta HOM05D004915 ORTHO05D006048 9.6e-98 360.9 255 65.5
Sabra17G0075000 Salix brachista HOM05D004915 ORTHO05D006048 9.6e-98 360.9 253 66.4
TWI34G1631 Tripterygium wilfordii HOM05D004915 ORTHO05D006048 9.6e-98 360.9 255 67.1
Lj5C110T19 Lonicera japonica HOM05D004915 ORTHO05D006048 1.3e-97 360.5 264 64.8
BolC4t26193H Brassica oleracea HOM05D004915 ORTHO05D006048 1.6e-97 360.1 253 64.8
Carub.0005s0760 Capsella rubella HOM05D004915 ORTHO05D006048 3.7e-97 359.0 255 63.5
Ciclev10012474m.g Citrus clementina HOM05D004915 ORTHO05D006048 3.7e-97 359.0 259 64.9
Migut.L00264 Erythranthe guttata HOM05D004915 ORTHO05D006048 4.8e-97 358.6 254 64.6
MD14G1201800 Malus domestica HOM05D004915 ORTHO05D006048 6.2e-97 358.2 250 66.4
MSTRG.15680 Avicennia marina HOM05D004915 ORTHO05D006048 8.1e-97 357.8 255 65.9
BraA06t26934Z Brassica rapa HOM05D004915 ORTHO05D006048 8.1e-97 357.8 255 63.9
Nitab4.5_0000121g0120 Nicotiana tabacum HOM05D004915 ORTHO05D006048 8.1e-97 357.8 255 62.7
C04p46080 Brassica napus HOM05D004915 ORTHO05D006048 1.4e-96 357.1 253 64.0
HanXRQChr08g0236601 Helianthus annuus HOM05D004915 ORTHO05D006048 1.4e-96 357.1 254 64.6
HanXRQChr09g0247201 Helianthus annuus HOM05D004915 ORTHO05D006048 1.4e-96 357.1 254 64.2
A06p40200 Brassica napus HOM05D004915 ORTHO05D006048 1.8e-96 356.7 255 63.5
FAN18G3490 Fragaria x ananassa HOM05D004915 ORTHO05D006048 2.4e-96 356.3 253 66.4
BraA04t16903Z Brassica rapa HOM05D004915 ORTHO05D006048 5.3e-96 355.1 253 64.0
CAN.G199.5 Capsicum annuum HOM05D004915 ORTHO05D006048 5.3e-96 355.1 246 64.2
FAN08G1694 Fragaria x ananassa HOM05D004915 ORTHO05D006048 6.9e-96 354.8 259 65.6
CARHR152100 Cardamine hirsuta HOM05D004915 ORTHO05D006048 9.0e-96 354.4 255 62.4
FvH4_5g14790 Fragaria vesca HOM05D004915 ORTHO05D006048 1.2e-95 354.0 253 66.4
Hund02640 Selenicereus undatus HOM05D004915 ORTHO05D006048 1.2e-95 354.0 259 62.9
FAN13G2234 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.5e-95 353.6 259 65.6
Lsat_1_v5_gn_9_27040 Lactuca sativa HOM05D004915 ORTHO05D006048 1.5e-95 353.6 261 63.2
A04p12400 Brassica napus HOM05D004915 ORTHO05D006048 2.0e-95 353.2 253 64.0
Ca_02901_v3 Cicer arietinum L. HOM05D004915 ORTHO05D006048 2.0e-95 353.2 257 62.6
VMungo1383G0755 Vigna mungo HOM05D004915 ORTHO05D006048 3.4e-95 352.4 260 60.4
BolC7t44312H Brassica oleracea HOM05D004915 ORTHO05D006048 5.8e-95 351.7 260 62.7
Nn4g23203 Nelumbo nucifera HOM05D004915 ORTHO05D006048 5.8e-95 351.7 244 67.2
AUR62021031 Chenopodium quinoa HOM05D004915 ORTHO05D006048 1.7e-94 350.1 258 62.0
CANSAT56G1541 Cannabis sativa HOM05D004915 ORTHO05D006048 2.9e-94 349.4 248 67.7
BcaC06g33662 Brassica carinata HOM05D004915 ORTHO05D006048 3.8e-94 349.0 260 62.3
C07p37910 Brassica napus HOM05D004915 ORTHO05D006048 3.8e-94 349.0 260 62.3
HPP92_002574 Vanilla planifolia HOM05D004915 ORTHO05D006048 3.8e-94 349.0 253 64.0
HPP92_002576 Vanilla planifolia HOM05D004915 ORTHO05D006048 3.8e-94 349.0 253 64.0
TPR.G33578 Trifolium pratense HOM05D004915 ORTHO05D006048 1.9e-93 346.7 260 60.8
CsaV3_1G005570 Cucumis sativus L. HOM05D004915 ORTHO05D006048 2.4e-93 346.3 267 60.7
Phvul.008G037200 Phaseolus vulgaris HOM05D004915 ORTHO05D006048 2.4e-93 346.3 260 59.2
ClCG04G012190 Citrullus lanatus HOM05D004915 ORTHO05D006048 5.5e-93 345.1 254 62.2
Lj1g0024391 Lotus japonicus HOM05D004915 ORTHO05D006048 5.5e-93 345.1 255 61.2
Glyma.09G236600 Glycine max HOM05D004915 ORTHO05D006048 7.1e-93 344.7 260 60.4
arahy.Tifrunner.gnm1.ann1.BYQL86 Arachis hypogaea HOM05D004915 ORTHO05D006048 9.3e-93 344.4 248 63.7
MELO3C001989.2 Cucumis melo HOM05D004915 ORTHO05D006048 2.1e-92 343.2 267 60.3
Os08g0435800 Oryza sativa ssp. japonica HOM05D004915 ORTHO05D006048 3.5e-92 342.4 256 62.1
TPR.G39201 Trifolium pratense HOM05D004915 ORTHO05D006048 6.0e-92 341.7 257 60.3
Medtr1g111380 Medicago truncatula HOM05D004915 ORTHO05D006048 8.7e-91 337.8 249 60.2
Medtr7g011040 Medicago truncatula HOM05D004915 ORTHO05D006048 5.6e-90 335.1 256 58.2
Lalb_Chr23g0265041 Lupinus albus HOM05D004915 ORTHO05D006048 9.6e-90 334.3 250 61.2
Psat3g200280 Pisum sativum HOM05D004915 ORTHO05D006048 1.6e-89 333.6 257 59.1
PGR083G1377 Punica granatum HOM05D004915 ORTHO05D006048 2.1e-89 333.2 225 67.1
Peaxi162Scf00106g00016 Petunia axillaris HOM05D004915 ORTHO05D006048 8.2e-89 331.3 294 52.7
Zm00001eb211140 Zea mays HOM05D004915 ORTHO05D006048 8.2e-89 331.3 258 59.7
EL10Ac3g07299 Beta vulgaris HOM05D004915 ORTHO05D006048 5.3e-88 328.6 304 53.0
CSS0012692 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 9.0e-88 327.8 254 63.4
AUR62018412 Chenopodium quinoa HOM05D004915 ORTHO05D006048 1.2e-87 327.4 245 60.4
THA.LOC104825807 Tarenaya hassleriana HOM05D004915 ORTHO05D006048 7.1e-85 318.2 282 56.7
Gorai.001G074400 Gossypium raimondii HOM05D004915 ORTHO05D006048 1.1e-82 310.8 199 70.9
DCAR_015957 Daucus carota HOM05D004915 ORTHO05D006048 1.5e-82 310.5 244 61.5
Gohir.D07G070500 Gossypium hirsutum HOM05D004915 ORTHO05D006048 5.7e-82 308.5 199 69.8
AT3G29010 Arabidopsis thaliana HOM05D004915 ORTHO05D006048 9.7e-82 307.8 188 70.7
SEGI_18610 Sequoiadendron giganteum HOM05D004915 ORTHO05D006048 6.9e-80 301.6 218 62.8
BcaB06g27359 Brassica carinata HOM05D004915 ORTHO05D006048 9.0e-80 301.2 250 58.8
Sed0011950 Sechium edule HOM05D004915 ORTHO05D006048 7.2e-77 291.6 188 68.6
Sc04g0002730 Simmondsia chinensis HOM05D004915 ORTHO05D006048 1.8e-75 287.0 218 65.1
PGR031G1409 Punica granatum HOM05D004915 ORTHO05D006048 2.3e-75 286.6 206 63.6
Mapoly0106s0015 Marchantia polymorpha HOM05D004915 ORTHO05D006048 4.1e-72 275.8 252 51.2
CSS0012742 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 3.4e-71 272.7 258 53.9
AagrBONN_evm.TU.Sc2ySwM_344.3958 Anthoceros agrestis HOM05D004915 ORTHO05D006048 4.5e-71 272.3 223 57.4
Actinidia26226 Actinidia chinensis HOM05D004915 ORTHO05D006048 5.9e-71 271.9 243 56.4
Pp3c2_33530 Physcomitrium patens HOM05D004915 ORTHO05D006048 7.2e-69 265.0 246 53.3
ATR0626G227 Amborella trichopoda HOM05D004915 ORTHO05D006048 3.9e-67 259.2 194 60.8
SMO119G0486 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 2.6e-66 256.5 222 52.3
AagrBONN_evm.TU.Sc2ySwM_362.689 Anthoceros agrestis HOM05D004915 ORTHO05D006048 8.2e-65 251.5 181 61.9
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 1.2e-63 247.7 253 50.2
AagrBONN_evm.TU.Sc2ySwM_362.690 Anthoceros agrestis HOM05D004915 ORTHO05D006048 6.1e-60 235.3 170 61.8
QL06p014871 Quercus lobata HOM05D004915 ORTHO05D006048 2.0e-58 230.3 128 76.6
Cre01.g053750 Chlamydomonas reinhardtii HOM05D004915 ORTHO05D006048 7.0e-56 221.9 203 51.2
MCO14G534 Micromonas commoda HOM05D004915 ORTHO05D006048 4.2e-53 212.6 221 47.1
HanXRQChr14g0437411 Helianthus annuus HOM05D004915 ORTHO05D006048 1.8e-51 207.2 139 66.9
Gohir.A07G066000 Gossypium hirsutum HOM05D004915 ORTHO05D006048 2.3e-51 206.8 138 68.8
unitig_60.g25520 Utricularia gibba HOM05D004915 ORTHO05D006048 4.1e-48 196.1 254 40.6
HanXRQChr13g0408591 Helianthus annuus HOM05D004915 ORTHO05D006048 7.0e-48 195.3 126 68.3
SMO164G0178 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 5.2e-43 179.1 221 41.6
vmacro18186 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 1.2e-42 177.9 196 48.5
vmacro05688 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 1.3e-41 174.5 144 57.6
Nitab4.5_0004528g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 1.7e-41 174.1 294 36.7
CBR_g58409 Chara braunii HOM05D004915 ORTHO05D006048 1.4e-40 171.0 128 58.6
PRCOL_00000090 Prasinoderma coloniale HOM05D004915 ORTHO05D006048 5.4e-40 169.1 249 37.8
Nitab4.5_0005170g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 7.0e-40 168.7 112 66.1
DCAR_026059 Daucus carota HOM05D004915 ORTHO05D006048 8.3e-33 145.2 122 56.6
FAN06G0706 Fragaria x ananassa HOM05D004915 ORTHO05D006048 4.9e-25 119.4 96 59.4
Ah.04g150570 Amaranthus hybridus HOM05D004915 ORTHO05D006048 1.4e-24 117.9 79 63.3
QL06p014899 Quercus lobata HOM05D004915 ORTHO05D006048 1.4e-24 117.9 65 72.3
Nitab4.5_0005170g0060 Nicotiana tabacum HOM05D004915 ORTHO05D006048 3.6e-20 103.2 99 46.5
ATR0642G001 Amborella trichopoda HOM05D004915 ORTHO05D006048 6.2e-20 102.4 60 78.3
Pp3s30_306 Physcomitrium patens HOM05D004915 ORTHO05D043763 2.9e-09 67.0 190 25.8
DCAR_015961 Daucus carota HOM05D004915 ORTHO05D006048 1.7e-06 57.8 68 42.6


User provided reference genes

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