Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 2.3e-157 558.9 292 100.0
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 4.2e-143 511.5 292 89.7
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 4.1e-122 441.8 291 76.6
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 8.5e-120 434.1 297 74.1
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 6.7e-117 424.5 294 74.5
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 2.6e-116 422.5 289 75.4
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 2.7e-110 402.5 293 71.7
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 8.8e-109 397.5 293 71.3
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 2.8e-107 392.5 293 71.3
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 4.1e-106 388.7 286 71.0
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 1.2e-105 387.1 292 69.2
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 2.0e-105 386.3 292 68.8
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 5.9e-105 384.8 295 68.5
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 5.0e-104 381.7 286 68.5
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 1.1e-103 380.6 292 68.2
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 1.9e-103 379.8 294 67.3
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 2.5e-103 379.4 294 67.3
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 4.2e-103 378.6 294 68.0
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 2.7e-102 375.9 294 66.7
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 2.7e-102 375.9 285 68.4
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 4.7e-102 375.2 294 66.7
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 4.7e-102 375.2 285 68.8
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 4.7e-102 375.2 292 67.5
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 4.7e-102 375.2 285 68.4
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 4.7e-102 375.2 291 67.0
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 6.1e-102 374.8 292 66.8
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 8.0e-102 374.4 294 66.7
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 4.0e-101 372.1 292 66.4
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 6.7e-101 371.3 285 68.1
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 6.7e-101 371.3 285 67.7
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 2.6e-100 369.4 284 68.0
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 4.4e-100 368.6 292 66.1
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 4.4e-100 368.6 291 66.3
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 2.2e-99 366.3 291 64.6
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 3.7e-99 365.5 292 65.1
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 3.7e-99 365.5 292 66.4
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 4.8e-99 365.2 293 64.8
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 6.3e-99 364.8 283 66.4
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 6.3e-99 364.8 292 65.4
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 1.1e-98 364.0 286 66.1
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 1.1e-98 364.0 275 69.1
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 1.4e-98 363.6 292 65.4
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 1.4e-98 363.6 294 65.3
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 1.8e-98 363.2 295 67.5
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 2.4e-98 362.8 295 67.1
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 3.1e-98 362.5 292 66.8
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 4.1e-98 362.1 290 68.3
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 5.3e-98 361.7 285 66.7
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 5.3e-98 361.7 285 66.3
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 2.0e-97 359.8 291 64.3
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 2.7e-97 359.4 292 63.7
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 4.5e-97 358.6 296 64.5
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 4.5e-97 358.6 292 63.7
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 5.9e-97 358.2 291 63.9
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 1.3e-96 357.1 283 66.8
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 1.3e-96 357.1 288 66.3
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 3.8e-96 355.5 291 66.0
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 1.1e-95 354.0 295 65.4
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 2.5e-95 352.8 305 64.9
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 7.2e-95 351.3 283 64.3
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 7.2e-95 351.3 226 76.5
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 3.6e-94 349.0 294 62.6
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 4.7e-94 348.6 296 64.9
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 6.1e-94 348.2 291 63.2
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 8.0e-94 347.8 285 64.6
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 1.0e-93 347.4 296 63.9
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 1.4e-93 347.1 281 64.8
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 1.8e-93 346.7 275 66.9
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 1.8e-93 346.7 270 66.3
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 2.3e-93 346.3 294 65.3
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 4.0e-93 345.5 250 71.2
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 4.0e-93 345.5 286 64.0
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 5.2e-93 345.1 282 64.9
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 5.2e-93 345.1 281 64.8
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 8.8e-93 344.4 275 66.9
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 1.2e-92 344.0 226 75.7
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 2.6e-92 342.8 295 63.1
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 4.4e-92 342.0 283 65.0
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 7.5e-92 341.3 266 66.5
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 6.3e-91 338.2 315 59.0
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 6.3e-91 338.2 283 64.0
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 6.3e-91 338.2 283 64.0
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 6.3e-91 338.2 283 64.0
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 8.3e-91 337.8 238 71.4
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 1.1e-90 337.4 294 62.2
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 1.1e-90 337.4 227 74.9
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 1.8e-90 336.7 292 62.3
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 4.1e-90 335.5 292 62.3
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 9.1e-90 334.3 283 62.5
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 9.1e-90 334.3 286 61.5
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 2.0e-89 333.2 283 61.5
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 4.5e-89 332.0 216 75.0
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 1.3e-88 330.5 282 62.8
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 1.3e-88 330.5 282 62.8
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 1.3e-88 330.5 282 62.8
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 2.2e-88 329.7 283 61.8
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 2.2e-88 329.7 282 62.8
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 6.5e-88 328.2 281 62.6
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 8.5e-88 327.8 296 62.5
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 1.1e-87 327.4 283 61.1
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 1.9e-87 326.6 296 60.1
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 3.2e-87 325.9 282 62.1
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 1.6e-86 323.6 289 60.9
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 1.6e-86 323.6 281 62.3
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 2.1e-86 323.2 292 59.9
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 2.7e-86 322.8 294 60.5
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 1.8e-85 320.1 252 65.5
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 4.0e-85 318.9 292 60.3
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 4.0e-85 318.9 244 65.6
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 2.6e-84 316.2 285 60.0
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 6.3e-83 311.6 295 55.3
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 8.3e-83 311.2 259 63.3
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 7.7e-81 304.7 252 62.3
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 3.3e-79 299.3 243 63.0
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 5.2e-77 292.0 226 65.0
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 5.2e-77 292.0 226 65.0
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 2.0e-76 290.0 222 68.5
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 2.6e-76 289.7 302 53.3
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 9.8e-76 287.7 241 61.8
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 6.4e-75 285.0 279 55.6
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 1.1e-74 284.3 283 54.4
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.7e-72 276.9 215 69.3
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 1.8e-69 266.9 243 56.4
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.3e-64 250.0 216 63.0
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 4.7e-62 242.3 229 58.5
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 1.1e-61 241.1 264 54.5
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 8.3e-59 231.5 197 54.8
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 3.2e-58 229.6 197 54.8
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 9.2e-58 228.0 197 53.8
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.1e-57 226.9 197 53.8
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 2.3e-56 223.4 270 50.4
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 2.0e-52 210.3 148 68.2
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 8.4e-51 204.9 136 72.1
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.1e-47 194.5 171 61.4
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 5.6e-47 192.2 197 48.2
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 5.2e-45 185.7 143 64.3
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 4.9e-43 179.1 189 50.3
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 7.1e-34 148.7 225 46.2
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.6e-33 147.5 187 40.6
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 6.7e-32 142.1 226 43.8
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 3.1e-29 133.3 89 74.2
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 4.0e-29 132.9 200 36.5
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 2.0e-28 130.6 119 60.5
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 1.3e-27 127.9 191 40.3
PRCOL_00006308 Prasinoderma coloniale HOM05D004641 ORTHO05D005871 5.5e-26 122.5 217 32.7
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 9.3e-26 121.7 76 73.7
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 3.3e-23 113.2 96 59.4
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 3.3e-23 113.2 96 59.4
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 4.9e-19 99.4 59 79.7
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.5e-18 97.1 58 77.6
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 3.2e-18 96.7 57 78.9
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.1e-17 94.0 58 75.9
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 4.6e-17 92.8 91 50.5
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.5e-15 87.0 64 68.8
MBI13_g16082_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 8.2e-14 82.0 48 77.1
A10p02040 Brassica napus HOM05D000207 ORTHO05D013918 5.9e-12 75.9 51 66.7
A02p16560 Brassica napus HOM05D004641 ORTHO05D005871 4.3e-07 59.7 87 40.2
A09p47150 Brassica napus HOM05D004641 ORTHO05D022007 2.2e-06 57.4 97 39.2
BraA09t40177Z Brassica rapa HOM05D004641 ORTHO05D022007 2.2e-06 57.4 97 39.2


User provided reference genes

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