Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 3.0e-276 954.5 476 100.0
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 1.1e-190 670.2 477 67.5
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 1.7e-189 666.4 464 69.2
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 8.2e-189 664.1 465 68.2
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 4.5e-187 658.3 463 68.5
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 6.5e-186 654.4 465 67.1
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 8.5e-186 654.1 464 68.1
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 7.9e-184 647.5 465 66.5
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 1.4e-183 646.7 464 66.8
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 2.3e-183 646.0 463 67.4
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 3.0e-183 645.6 463 67.8
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 2.0e-182 642.9 465 66.2
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 2.6e-182 642.5 467 67.0
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 3.3e-182 642.1 465 66.5
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 3.3e-182 642.1 464 66.8
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 4.4e-182 641.7 465 66.5
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 4.4e-182 641.7 468 65.8
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 9.7e-182 640.6 465 66.2
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 1.1e-180 637.1 465 67.1
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 1.8e-180 636.3 464 66.2
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 2.4e-180 636.0 466 65.5
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 3.1e-180 635.6 464 65.9
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 4.1e-180 635.2 466 65.5
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 1.2e-179 633.6 466 65.9
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 3.5e-179 632.1 464 65.7
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 8.5e-178 627.5 469 66.1
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 1.9e-177 626.3 488 62.9
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 3.2e-177 625.5 473 65.1
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 2.1e-176 622.9 463 65.0
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 4.7e-176 621.7 437 68.2
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 2.3e-175 619.4 451 65.6
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 1.7e-173 613.2 461 64.4
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 8.2e-173 610.9 466 62.2
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 1.8e-172 609.8 466 64.4
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 3.1e-172 609.0 464 65.1
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 3.1e-172 609.0 461 63.8
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 3.5e-171 605.5 416 69.5
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 7.7e-171 604.4 465 63.9
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 1.3e-170 603.6 465 63.9
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 3.8e-170 602.1 465 62.6
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 8.5e-170 600.9 462 62.8
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 3.2e-169 599.0 463 62.4
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 9.4e-169 597.4 463 62.9
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 1.2e-168 597.0 463 62.9
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 2.1e-168 596.3 466 61.8
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 2.1e-168 596.3 463 62.0
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 2.7e-168 595.9 465 62.2
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 3.6e-168 595.5 463 62.2
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 6.1e-168 594.7 464 61.6
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 8.0e-168 594.3 462 62.3
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 2.3e-167 592.8 477 61.4
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 1.2e-166 590.5 468 62.4
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 2.0e-166 589.7 435 64.6
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 4.4e-166 588.6 465 60.9
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 1.7e-165 586.6 463 62.0
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 1.7e-165 586.6 463 61.8
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 2.2e-165 586.3 471 61.1
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 6.3e-165 584.7 462 62.1
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 1.8e-164 583.2 470 62.8
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 2.5e-161 572.8 459 61.4
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 4.2e-161 572.0 463 60.5
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 2.7e-160 569.3 438 63.2
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 2.7e-160 569.3 463 60.7
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 3.6e-160 568.9 464 60.1
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 1.0e-159 567.4 461 61.8
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 4.0e-159 565.5 459 61.4
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 4.0e-159 565.5 464 60.3
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 2.0e-158 563.1 460 60.2
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 5.7e-158 561.6 464 60.3
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 1.3e-157 560.5 460 60.4
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 8.3e-157 557.8 461 61.8
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 7.0e-156 554.7 460 59.8
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 9.2e-156 554.3 445 61.6
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 1.2e-155 553.9 460 57.6
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 1.2e-155 553.9 453 60.5
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 1.2e-155 553.9 468 57.7
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 2.7e-155 552.7 461 61.0
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 1.0e-154 550.8 463 61.1
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 1.7e-154 550.1 461 60.5
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 2.3e-154 549.7 460 59.1
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 2.3e-154 549.7 460 57.4
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 3.8e-154 548.9 461 60.5
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 3.8e-154 548.9 461 60.5
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 3.8e-154 548.9 461 60.5
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 8.6e-154 547.7 463 60.0
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 2.5e-153 546.2 460 57.2
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 2.5e-153 546.2 460 58.7
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 5.6e-153 545.0 472 57.0
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 7.3e-153 544.7 460 57.0
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 1.6e-152 543.5 460 57.4
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 2.1e-152 543.1 461 57.5
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 3.0e-151 539.3 416 62.7
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 8.9e-151 537.7 463 58.5
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 6.4e-149 531.6 460 57.8
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 5.4e-148 528.5 438 59.6
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 9.2e-148 527.7 435 58.2
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 1.6e-147 526.9 462 57.8
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 4.6e-147 525.4 459 58.0
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 1.0e-146 524.2 431 58.5
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 2.3e-146 523.1 435 60.5
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 1.5e-145 520.4 424 61.3
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 9.5e-145 517.7 485 54.4
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 9.5e-145 517.7 460 55.0
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 5.2e-143 511.9 468 55.3
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 5.2e-143 511.9 486 55.8
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 2.0e-142 510.0 462 55.2
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 8.3e-141 504.6 433 58.9
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 7.0e-140 501.5 438 56.2
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 3.5e-139 499.2 460 55.9
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 1.7e-138 496.9 444 57.7
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 1.1e-135 487.6 464 54.7
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 1.8e-135 486.9 499 50.7
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 2.4e-132 476.5 341 67.4
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 5.1e-130 468.8 462 54.1
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 1.1e-127 461.1 388 60.1
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 4.4e-126 455.7 352 62.2
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 3.5e-123 446.0 365 59.5
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 2.5e-121 439.9 446 54.0
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 3.6e-120 436.0 508 46.9
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 9.9e-118 427.9 426 53.5
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 5.4e-116 422.2 498 46.6
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 2.4e-108 396.7 463 46.9
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 4.8e-88 329.3 414 43.7
Atru.chr9.2355 Acer truncatum HOM05D004011 ORTHO05D005290 2.3e-82 310.5 233 65.7
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 1.4e-79 301.2 427 39.8
Atru.chr5.3340 Acer truncatum HOM05D004011 ORTHO05D005290 4.8e-72 276.2 196 66.8
Atru.chr1.621 Acer truncatum HOM05D004011 ORTHO05D005290 8.2e-72 275.4 196 66.8
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 1.7e-69 267.7 262 51.9
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 2.5e-68 263.8 190 66.8
Actinidia08204 Actinidia chinensis HOM05D004011 ORTHO05D005290 9.1e-63 245.4 200 58.5
BraA08t32877Z Brassica rapa HOM05D004011 ORTHO05D005290 2.6e-57 227.3 225 54.2
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 7.5e-49 199.1 145 64.8
BolC7t42515H Brassica oleracea HOM05D004011 ORTHO05D005290 1.1e-47 195.3 225 48.4
C07p19960 Brassica napus HOM05D004011 ORTHO05D005290 6.5e-45 186.0 222 47.3
A07p13340 Brassica napus HOM05D004011 ORTHO05D005290 2.1e-43 181.0 376 34.8
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 2.2e-40 171.0 273 37.7
C05p23600 Brassica napus HOM05D004011 ORTHO05D005290 1.4e-39 168.3 314 37.3
TPR.G21863 Trifolium pratense HOM05D004011 ORTHO05D005290 1.3e-37 161.8 110 68.2
Atru.chr2.3843 Acer truncatum HOM05D004011 ORTHO05D005290 4.1e-31 140.2 193 40.9
BcaC06g35090 Brassica carinata HOM05D004011 ORTHO05D005290 1.2e-30 138.7 178 44.4
AL1G38380 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 8.6e-29 132.5 116 57.8
TAR636G0334 Trochodendron aralioides HOM05D004011 ORTHO05D005290 1.5e-28 131.7 82 74.4
AL1G38370 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 1.2e-27 128.6 110 59.1
BcaC06g35091 Brassica carinata HOM05D004011 ORTHO05D005290 4.0e-26 123.6 216 36.6
BraA07t29105Z Brassica rapa HOM05D004011 ORTHO05D005290 1.9e-23 114.8 132 45.5
BolC7t42514H Brassica oleracea HOM05D004011 ORTHO05D005290 3.5e-22 110.5 216 36.1
Cfa021096 Carpinus fangiana HOM05D004011 ORTHO05D000073 1.3e-21 108.6 93 58.1
BolC5t31071H Brassica oleracea HOM05D004011 ORTHO05D005290 3.9e-21 107.1 144 43.1
Duzib268G0988 Durio zibethinus HOM05D004011 ORTHO05D005290 1.9e-20 104.8 85 62.4
BolC5t31079H Brassica oleracea HOM05D004011 ORTHO05D005290 7.3e-20 102.8 76 65.8
BolC5t31081H Brassica oleracea HOM05D004011 ORTHO05D005290 7.3e-20 102.8 144 41.7
BolC7t42512H Brassica oleracea HOM05D004011 ORTHO05D005290 7.3e-20 102.8 132 45.5
BolC5t31070H Brassica oleracea HOM05D004011 ORTHO05D005290 4.7e-19 100.1 76 64.5
C07p19930 Brassica napus HOM05D004011 ORTHO05D005290 1.4e-18 98.6 123 45.5
BcaB04g18716 Brassica carinata HOM05D000040 ORTHO05D005442 5.8e-17 93.2 148 40.5
SEGI_16255 Sequoiadendron giganteum HOM05D004011 ORTHO05D005290 5.8e-17 93.2 116 42.2
BolC5t31074H Brassica oleracea HOM05D004011 ORTHO05D005290 9.9e-17 92.4 64 67.2
RcHm_v2.0_Chr7g0206221 Rosa chinensis HOM05D004011 ORTHO05D005290 1.3e-16 92.0 54 70.4
C07p19950 Brassica napus HOM05D004011 ORTHO05D005290 1.7e-16 91.7 219 34.2
Cc11_g13680 Coffea canephora HOM05D004011 ORTHO05D005290 3.7e-16 90.5 78 52.6
Atru.chr1.3881 Acer truncatum HOM05D004011 ORTHO05D023183 7.1e-15 86.3 56 71.4
SMO203G0050 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 8.6e-13 79.3 183 29.5
BcaB07g32391 Brassica carinata HOM05D026641 ORTHO05D027156 1.1e-12 79.0 98 45.9
SMO252G0024 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.9e-12 78.2 177 29.9
SMO110G0005 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 2.1e-11 74.7 177 29.4
AL2G16820 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 1.8e-10 71.6 56 60.7
A07p13320 Brassica napus HOM05D004011 ORTHO05D005290 2.0e-09 68.2 53 58.5
A07p13600 Brassica napus HOM05D004011 ORTHO05D100703 3.4e-09 67.4 56 55.4
SMO331G0031 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 3.8e-08 63.9 118 33.9
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 8.4e-08 62.8 63 46.0
SMO331G0015 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.9e-07 61.6 63 46.0
CAN.G1697.3 Capsicum annuum HOM05D013442 ORTHO05D016868 2.4e-07 61.2 68 47.1
BraA07t29103Z Brassica rapa HOM05D001102 ORTHO05D021602 2.1e-06 58.2 40 62.5
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.1e-06 58.2 172 26.7
Nitab4.5_0002852g0030 Nicotiana tabacum HOM05D001347 ORTHO05D001198 6.0e-06 56.6 42 61.9


User provided reference genes

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