Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G03178 Aquilegia oxysepala HOM05D005427 ORTHO05D006461 4.9e-123 444.5 228 100.0
TAR628G1492 Trochodendron aralioides HOM05D001631 ORTHO05D001591 5.0e-67 258.5 224 59.8
Nn1g05775 Nelumbo nucifera HOM05D005427 ORTHO05D006461 5.1e-64 248.4 226 56.2
CSS0026502 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 9.1e-61 237.7 231 52.4
GSVIVG01017423001 Vitis vinifera HOM05D005427 ORTHO05D006461 8.5e-59 231.1 215 55.8
CSS0032221 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 1.5e-58 230.3 233 52.4
CSS0024088 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 1.2e-57 227.3 233 51.9
Dinv36993 Davidia involucrata HOM05D005427 ORTHO05D006461 3.6e-57 225.7 231 51.5
QL06p037683 Quercus lobata HOM05D005427 ORTHO05D006461 6.1e-57 224.9 230 48.7
Potri.017G091300 Populus trichocarpa HOM05D005427 ORTHO05D006461 3.0e-56 222.6 228 49.6
Rhsim07G0122400 Rhododendron simsii HOM05D005427 ORTHO05D006461 9.7e-55 217.6 239 47.3
Atru.chr3.1127 Acer truncatum HOM05D005427 ORTHO05D006461 1.3e-54 217.2 230 48.3
Atru.chr3.1136 Acer truncatum HOM05D005427 ORTHO05D006461 1.3e-54 217.2 230 48.3
TAR376G0349 Trochodendron aralioides HOM05D005427 ORTHO05D006461 1.7e-54 216.9 226 50.0
Ciclev10026408m.g Citrus clementina HOM05D005427 ORTHO05D006461 5.3e-53 211.8 220 48.6
TWI74G0676 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 7.0e-53 211.5 212 49.5
Prupe.6G211100 Prunus persica HOM05D005427 ORTHO05D006461 1.6e-52 210.3 221 48.0
Migut.F01758 Erythranthe guttata HOM05D005427 ORTHO05D006461 5.9e-52 208.4 210 51.9
RcHm_v2.0_Chr2g0109701 Rosa chinensis HOM05D005427 ORTHO05D006461 7.7e-52 208.0 217 47.9
FvH4_1g18830 Fragaria vesca HOM05D005427 ORTHO05D006461 1.7e-51 206.8 217 47.5
PGR102G2470 Punica granatum HOM05D005427 ORTHO05D006461 2.9e-51 206.1 212 49.1
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 8.5e-51 204.5 229 48.5
Thecc.01G082100 Theobroma cacao HOM05D005427 ORTHO05D006461 1.1e-50 204.1 212 47.6
vmacro07282 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 1.9e-50 203.4 235 48.1
Manes.13G105100 Manihot esculenta HOM05D005427 ORTHO05D006461 1.6e-49 200.3 213 50.2
CiPaw.08G147100 Carya illinoinensis HOM05D005427 ORTHO05D006461 3.6e-49 199.1 212 45.8
FAN23G0196 Fragaria x ananassa HOM05D005427 ORTHO05D006461 4.7e-49 198.7 227 46.3
Cfa001616 Carpinus fangiana HOM05D005427 ORTHO05D006461 8.0e-49 198.0 221 46.2
COL.COLO4_11665 Corchorus olitorius HOM05D005427 ORTHO05D006461 1.4e-48 197.2 210 45.7
PSO761G0697 Papaver somniferum HOM05D005427 ORTHO05D006461 1.8e-48 196.8 227 44.5
Gohir.A11G206966 Gossypium hirsutum HOM05D005427 ORTHO05D006461 2.3e-48 196.4 213 48.4
Dinv21205 Davidia involucrata HOM05D005427 ORTHO05D006461 3.0e-48 196.1 213 51.6
Gorai.007G232600 Gossypium raimondii HOM05D005427 ORTHO05D006461 3.0e-48 196.1 213 47.9
RcHm_v2.0_Chr5g0054161 Rosa chinensis HOM05D005427 ORTHO05D006461 2.6e-47 193.0 217 45.6
PGSC0003DMG400012980 Solanum tuberosum HOM05D005427 ORTHO05D006461 3.4e-47 192.6 212 43.4
Sopen09g003480 Solanum pennellii HOM05D005427 ORTHO05D006461 4.4e-47 192.2 212 43.4
Gohir.D11G216500 Gossypium hirsutum HOM05D005427 ORTHO05D006461 5.7e-47 191.8 207 48.3
Solyc09g008680.4 Solanum lycopersicum HOM05D005427 ORTHO05D006461 1.3e-46 190.7 212 43.9
Lalb_Chr04g0263231 Lupinus albus HOM05D005427 ORTHO05D006461 2.2e-46 189.9 227 43.6
Eucgr.H02348 Eucalyptus grandis HOM05D005427 ORTHO05D006461 4.8e-46 188.7 213 45.1
FAN19G1732 Fragaria x ananassa HOM05D005427 ORTHO05D006461 1.1e-45 187.6 246 41.5
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 4.1e-45 185.7 216 47.7
ClCG09G016510 Citrullus lanatus HOM05D005427 ORTHO05D006461 1.2e-44 184.1 209 45.0
THA.LOC104819282 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 1.6e-44 183.7 218 44.0
Glyma.08G273000 Glycine max HOM05D005427 ORTHO05D006461 2.0e-44 183.3 240 43.3
ECA233G5189 Erigeron canadensis HOM05D005427 ORTHO05D006461 2.7e-44 183.0 230 43.0
CANSAT01G2304 Cannabis sativa HOM05D005427 ORTHO05D006461 4.5e-44 182.2 230 45.7
SGA_v2.0_scaffold147G36350 Striga asiatica HOM05D005427 ORTHO05D006461 1.3e-43 180.6 211 46.9
CsaV3_7G007450 Cucumis sativus L. HOM05D005427 ORTHO05D006461 1.7e-43 180.3 209 43.5
SGA_v2.0_scaffold70G23436 Striga asiatica HOM05D005427 ORTHO05D006461 1.7e-43 180.3 211 46.4
Phvul.003G285200 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 2.9e-43 179.5 233 43.3
Sed0018601 Sechium edule HOM05D005427 ORTHO05D006461 2.9e-43 179.5 217 41.5
vmacro05473 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 6.5e-43 178.3 264 40.2
CAN.G1830.8 Capsicum annuum HOM05D005427 ORTHO05D006461 8.5e-43 177.9 216 40.3
SGA_v2.0_scaffold4G02171 Striga asiatica HOM05D005427 ORTHO05D006461 1.1e-42 177.6 211 46.4
AL7G47510 Arabidopsis lyrata HOM05D005427 ORTHO05D006461 1.5e-42 177.2 215 44.2
HanXRQChr12g0368771 Helianthus annuus HOM05D005427 ORTHO05D006461 1.9e-42 176.8 207 44.9
Aa31LG4G18120 Aethionema arabicum HOM05D005427 ORTHO05D006461 4.2e-42 175.6 226 43.8
Phvul.003G285800 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 4.2e-42 175.6 233 42.5
AT3G49645 Arabidopsis thaliana HOM05D005427 ORTHO05D006461 7.2e-42 174.9 216 44.0
Lj3g0020172 Lotus japonicus HOM05D005427 ORTHO05D006461 9.4e-42 174.5 222 42.3
Cpa.g.sc3.369 Carica papaya HOM05D005427 ORTHO05D006461 1.2e-41 174.1 219 41.6
MELO3C018556.2 Cucumis melo HOM05D005427 ORTHO05D006461 1.2e-41 174.1 209 43.1
DCAR_006436 Daucus carota HOM05D005427 ORTHO05D006461 2.1e-41 173.3 201 45.8
TPR.G15264 Trifolium pratense HOM05D005427 ORTHO05D006461 2.1e-41 173.3 244 40.2
Thhalv10019696m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 2.7e-41 172.9 218 42.2
Thhalv10010700m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 8.0e-41 171.4 219 42.9
Nitab4.5_0004281g0090 Nicotiana tabacum HOM05D005427 ORTHO05D006461 2.3e-40 169.9 228 42.1
Sp5g12450 Schrenkiella parvula HOM05D005427 ORTHO05D006461 2.3e-40 169.9 219 41.6
A06p28350 Brassica napus HOM05D005427 ORTHO05D006461 4.0e-40 169.1 223 42.2
C03p65440 Brassica napus HOM05D005427 ORTHO05D006461 4.0e-40 169.1 223 41.7
BolC3t18796H Brassica oleracea HOM05D005427 ORTHO05D006461 4.0e-40 169.1 223 41.7
BraA06t25777Z Brassica rapa HOM05D005427 ORTHO05D006461 4.0e-40 169.1 223 42.2
BcaC01g02424 Brassica carinata HOM05D005427 ORTHO05D006461 5.2e-40 168.7 209 43.5
Carub.0005s1599 Capsella rubella HOM05D005427 ORTHO05D006461 6.8e-40 168.3 208 42.3
AUR62041740 Chenopodium quinoa HOM05D005427 ORTHO05D006461 1.5e-39 167.2 214 43.9
PSO210G5957 Papaver somniferum HOM05D005427 ORTHO05D006461 1.5e-39 167.2 227 40.5
BraA07t29893Z Brassica rapa HOM05D005427 ORTHO05D006461 2.0e-39 166.8 224 41.5
CARHR158680 Cardamine hirsuta HOM05D005427 ORTHO05D006461 1.7e-38 163.7 217 41.0
EL10Ac9g20957 Beta vulgaris HOM05D005427 ORTHO05D006461 2.8e-38 162.9 214 42.5
Ah.01g015840 Amaranthus hybridus HOM05D005427 ORTHO05D006461 6.3e-38 161.8 221 41.2
AUR62024067 Chenopodium quinoa HOM05D005427 ORTHO05D006461 8.3e-38 161.4 214 43.5
Psat4g120800 Pisum sativum HOM05D005427 ORTHO05D006461 8.3e-38 161.4 244 37.3
Zm00001eb210960 Zea mays HOM05D005427 ORTHO05D006461 1.1e-37 161.0 216 37.0
Ah.01g003640 Amaranthus hybridus HOM05D000109 ORTHO05D000520 3.1e-37 159.5 216 41.7
AL5G29490 Arabidopsis lyrata HOM05D007023 ORTHO05D008684 3.1e-37 159.5 208 45.2
BcaB01g00686 Brassica carinata HOM05D005427 ORTHO05D006461 3.1e-37 159.5 216 38.4
Hund15020 Selenicereus undatus HOM05D005427 ORTHO05D006461 3.1e-37 159.5 203 41.9
Sc06g0009050 Simmondsia chinensis HOM05D005427 ORTHO05D006461 3.1e-37 159.5 218 39.4
AUR62019836 Chenopodium quinoa HOM05D005427 ORTHO05D006461 2.7e-36 156.4 223 40.4
BcaC07g39428 Brassica carinata HOM05D005427 ORTHO05D006461 4.5e-36 155.6 216 39.8
Duzib264G0001 Durio zibethinus HOM05D005427 ORTHO05D006461 4.5e-36 155.6 176 44.9
THA.LOC104799739 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 7.7e-36 154.8 225 37.8
HPP92_024834 Vanilla planifolia HOM05D005427 ORTHO05D006461 7.7e-36 154.8 221 38.9
HPP92_026626 Vanilla planifolia HOM05D005427 ORTHO05D006461 7.7e-36 154.8 221 38.9
A07p22100 Brassica napus HOM05D005427 ORTHO05D006461 1.0e-35 154.5 244 38.1
AUR62012052 Chenopodium quinoa HOM05D005427 ORTHO05D006461 1.7e-35 153.7 216 41.7
Hund13132 Selenicereus undatus HOM05D005427 ORTHO05D006461 2.9e-35 152.9 202 40.1
Glyma.20G162400 Glycine max HOM05D005427 ORTHO05D006461 5.0e-35 152.1 227 40.5
Peaxi162Scf00500g00116 Petunia axillaris HOM05D005427 ORTHO05D006461 8.6e-35 151.4 205 39.5
BraA06t24896Z Brassica rapa HOM05D007023 ORTHO05D008684 1.9e-34 150.2 203 40.9
Peaxi162Scf01051g00142 Petunia axillaris HOM05D005427 ORTHO05D006461 5.5e-34 148.7 223 37.7
Os10g0360900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 9.5e-34 147.9 219 36.1
Zm00001eb064010 Zea mays HOM05D005427 ORTHO05D006461 3.6e-33 146.0 245 35.1
Haze_16903 Corylus avellana HOM05D005427 ORTHO05D006461 1.0e-32 144.4 237 35.9
Medtr8g067265 Medicago truncatula HOM05D005427 ORTHO05D006461 5.2e-32 142.1 218 36.2
C08p24660 Brassica napus HOM05D007023 ORTHO05D008684 6.8e-32 141.7 202 40.1
BolC8t50081H Brassica oleracea HOM05D007023 ORTHO05D008684 6.8e-32 141.7 202 40.1
Hund00873 Selenicereus undatus HOM05D005427 ORTHO05D006461 8.9e-32 141.4 206 38.8
arahy.Tifrunner.gnm1.ann1.Y2QWLJ Arachis hypogaea HOM05D006058 ORTHO05D007686 2.0e-31 140.2 283 32.9
Phvul.002G065300 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 2.6e-31 139.8 176 43.2
arahy.Tifrunner.gnm1.ann1.SHER6S Arachis hypogaea HOM05D006058 ORTHO05D007686 3.4e-31 139.4 258 36.0
MD01G1046300 Malus domestica HOM05D005427 ORTHO05D006461 1.8e-29 133.7 172 41.9
BcaB02g09598 Brassica carinata HOM05D005427 ORTHO05D006461 4.1e-29 132.5 220 38.6
Cc09_g03000 Coffea canephora HOM05D005427 ORTHO05D006461 5.4e-29 132.1 134 48.5
A06p18060 Brassica napus HOM05D007023 ORTHO05D008684 2.0e-28 130.2 207 36.7
FAN27G1155 Fragaria x ananassa HOM05D005427 ORTHO05D006461 3.5e-28 129.4 215 36.7
Os07g0264900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 4.6e-28 129.0 181 37.0
Lsat_1_v5_gn_8_18901 Lactuca sativa HOM05D005427 ORTHO05D006461 2.3e-27 126.7 229 36.2
Hma1.2p1_0561F.1_g178960 Hydrangea macrophylla HOM05D005427 ORTHO05D006461 1.5e-26 124.0 123 48.8
FAN26G2664 Fragaria x ananassa HOM05D005427 ORTHO05D006461 2.1e-25 120.2 225 35.6
Sabra17G0080400 Salix brachista HOM05D005427 ORTHO05D006461 1.0e-24 117.9 204 36.3
Pp3c24_9930 Physcomitrium patens HOM05D005427 ORTHO05D006461 1.8e-24 117.1 221 33.5
TWI77G0140 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 8.9e-24 114.8 112 48.2
AagrBONN_evm.TU.Sc2ySwM_228.2937 Anthoceros agrestis HOM05D005427 ORTHO05D006461 2.6e-23 113.2 211 30.8
CSS0003252 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 1.6e-20 104.0 76 64.5
SMO367G1008 Selaginella moellendorffii HOM05D005427 ORTHO05D006461 1.0e-19 101.3 184 31.5
Rhsim10G0082400 Rhododendron simsii HOM05D005427 ORTHO05D006461 1.7e-19 100.5 67 67.2
VMungo1309G2225 Vigna mungo HOM05D005427 ORTHO05D006461 8.6e-19 98.2 135 40.7
MBI16_g14676_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 2.5e-18 96.7 166 34.9
EL10Ac6g13479 Beta vulgaris HOM05D005427 ORTHO05D006461 1.2e-17 94.4 173 35.3
MBI16_g26727_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 6.2e-17 92.0 63 65.1
Actinidia11934 Actinidia chinensis HOM05D005427 ORTHO05D006461 2.3e-16 90.1 117 45.3
Ah.16g109230 Amaranthus hybridus HOM05D005427 ORTHO05D006461 5.2e-16 89.0 104 42.3
Carub.0005s0959 Capsella rubella HOM05D005427 ORTHO05D006461 5.2e-16 89.0 64 60.9
MD00G1139600 Malus domestica HOM05D005427 ORTHO05D006461 2.6e-15 86.7 56 67.9
MD04G1240700 Malus domestica HOM05D005427 ORTHO05D006461 2.6e-15 86.7 56 67.9
Cc09_g02990 Coffea canephora HOM05D005427 ORTHO05D006461 4.4e-15 85.9 77 50.6
Nitab4.5_0006709g0040 Nicotiana tabacum HOM05D005427 ORTHO05D006461 9.8e-15 84.7 81 48.1
SEGI_00262 Sequoiadendron giganteum HOM05D005427 ORTHO05D006461 1.0e-11 74.7 62 53.2
Mapoly0002s0147 Marchantia polymorpha HOM05D005427 ORTHO05D006461 3.0e-11 73.2 233 25.8
MSTRG.375 Avicennia marina HOM05D005427 ORTHO05D006461 3.9e-11 72.8 81 44.4
AagrBONN_evm.TU.Sc2ySwM_344.3300 Anthoceros agrestis HOM05D005427 ORTHO05D006461 1.9e-10 70.5 110 32.7
SalBow7G4264 Salvia bowleyana HOM05D005427 ORTHO05D006461 1.2e-07 61.2 97 35.1


User provided reference genes

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