Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G03177 Aquilegia oxysepala HOM05D007009 ORTHO05D008451 3.7e-115 418.3 223 100.0
TAR374G0768 Trochodendron aralioides HOM05D007009 ORTHO05D008451 2.8e-62 242.7 176 69.9
Atru.chr11.1917 Acer truncatum HOM05D007009 ORTHO05D008451 6.8e-61 238.0 189 66.1
Actinidia08196 Actinidia chinensis HOM05D007009 ORTHO05D008451 3.2e-58 229.2 176 65.9
Cfa009076 Carpinus fangiana HOM05D007009 ORTHO05D008451 1.2e-57 227.3 186 65.6
Dinv31143 Davidia involucrata HOM05D007009 ORTHO05D008451 2.7e-57 226.1 236 55.1
Nn4g22971 Nelumbo nucifera HOM05D007009 ORTHO05D008451 2.7e-57 226.1 225 56.9
Dinv24931 Davidia involucrata HOM05D000094 ORTHO05D002904 1.7e-56 223.4 206 59.7
Ciclev10032750m.g Citrus clementina HOM05D007009 ORTHO05D008451 5.0e-56 221.9 178 62.9
CANSAT01G1662 Cannabis sativa HOM05D007009 ORTHO05D008451 8.6e-56 221.1 178 62.9
Prupe.1G262900 Prunus persica HOM05D007009 ORTHO05D008451 7.3e-55 218.0 180 63.3
COL.COLO4_36263 Corchorus olitorius HOM05D007009 ORTHO05D008451 2.1e-54 216.5 178 62.4
CSS0013437 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 8.1e-54 214.5 187 57.8
ClCG05G024860 Citrullus lanatus HOM05D007009 ORTHO05D008451 8.1e-54 214.5 188 59.0
PGSC0003DMG401022631 Solanum tuberosum HOM05D007009 ORTHO05D008451 2.3e-53 213.0 209 54.1
CsaV3_5G032050 Cucumis sativus L. HOM05D007009 ORTHO05D008451 3.1e-53 212.6 188 59.0
TWI18G0515 Tripterygium wilfordii HOM05D007009 ORTHO05D008451 5.2e-53 211.8 175 64.0
GSVIVG01020129001 Vitis vinifera HOM05D007009 ORTHO05D008451 5.2e-53 211.8 180 61.7
PSO591G0441 Papaver somniferum HOM05D007009 ORTHO05D008451 8.9e-53 211.1 181 59.1
Nitab4.5_0001030g0090 Nicotiana tabacum HOM05D007009 ORTHO05D008451 2.6e-52 209.5 184 57.1
Medtr5g037120 Medicago truncatula HOM05D007009 ORTHO05D008451 3.4e-52 209.1 177 60.5
Solyc05g006580.3 Solanum lycopersicum HOM05D007009 ORTHO05D008451 3.4e-52 209.1 209 53.1
QL03p067658 Quercus lobata HOM05D007009 ORTHO05D008451 1.7e-51 206.8 188 58.5
Sed0027578 Sechium edule HOM05D007009 ORTHO05D008451 3.7e-51 205.7 189 56.6
Duzib251G0800 Durio zibethinus HOM05D007009 ORTHO05D008451 6.4e-51 204.9 202 55.4
Sopen05g002530 Solanum pennellii HOM05D007009 ORTHO05D008451 6.4e-51 204.9 209 52.2
Nitab4.5_0008607g0010 Nicotiana tabacum HOM05D007009 ORTHO05D008451 8.3e-51 204.5 205 53.2
Thecc.02G237500 Theobroma cacao HOM05D007009 ORTHO05D008451 1.9e-50 203.4 206 53.4
PSO832G0198 Papaver somniferum HOM05D007009 ORTHO05D008451 2.4e-50 203.0 209 52.6
Glyma.02G026000 Glycine max HOM05D007009 ORTHO05D008451 3.2e-50 202.6 178 57.9
Gohir.A05G320100 Gossypium hirsutum HOM05D007009 ORTHO05D008451 4.1e-50 202.2 204 54.9
CiPaw.06G077800 Carya illinoinensis HOM05D007009 ORTHO05D008451 7.1e-50 201.4 178 60.7
Cc11_g13910 Coffea canephora HOM05D007009 ORTHO05D008451 1.2e-49 200.7 176 58.5
CiPaw.05G143700 Carya illinoinensis HOM05D007009 ORTHO05D008451 1.6e-49 200.3 178 60.1
Manes.01G193800 Manihot esculenta HOM05D007009 ORTHO05D008451 2.1e-49 199.9 202 52.0
PGR102G0074 Punica granatum HOM05D007009 ORTHO05D008451 2.7e-49 199.5 175 58.3
Gohir.D05G322400 Gossypium hirsutum HOM05D007009 ORTHO05D008451 3.5e-49 199.1 178 60.1
Gorai.009G346000 Gossypium raimondii HOM05D007009 ORTHO05D008451 7.8e-49 198.0 178 60.1
Lalb_Chr05g0217381 Lupinus albus HOM05D007009 ORTHO05D008451 1.7e-48 196.8 207 53.1
Hma1.2p1_0265F.1_g106360 Hydrangea macrophylla HOM05D007009 ORTHO05D008451 2.3e-48 196.4 181 60.2
Lj2g0006218 Lotus japonicus HOM05D007009 ORTHO05D008451 2.3e-48 196.4 176 58.0
Glyma.01G038700 Glycine max HOM05D007009 ORTHO05D008451 6.6e-48 194.9 178 56.2
arahy.Tifrunner.gnm1.ann1.8B6YVA Arachis hypogaea HOM05D007009 ORTHO05D008451 8.6e-48 194.5 175 57.7
CAN.G27.64 Capsicum annuum HOM05D007009 ORTHO05D008451 2.5e-47 193.0 178 53.9
Ah.03g132140 Amaranthus hybridus HOM05D007009 ORTHO05D008451 4.3e-47 192.2 182 56.6
FAN07G0981 Fragaria x ananassa HOM05D007009 ORTHO05D008451 9.5e-47 191.0 184 54.9
Eucgr.B03385 Eucalyptus grandis HOM05D007009 ORTHO05D008451 1.6e-46 190.3 189 54.5
Sp5g25090 Schrenkiella parvula HOM05D007009 ORTHO05D008451 1.6e-46 190.3 188 54.8
Thhalv10019139m.g Eutrema salsugineum HOM05D007009 ORTHO05D008451 2.1e-46 189.9 208 50.0
FvH4_4g35380 Fragaria vesca HOM05D007009 ORTHO05D008451 2.1e-46 189.9 203 51.2
FAN12G0678 Fragaria x ananassa HOM05D007009 ORTHO05D008451 2.1e-46 189.9 203 51.2
arahy.Tifrunner.gnm1.ann1.IMS4B0 Arachis hypogaea HOM05D007009 ORTHO05D008451 3.6e-46 189.1 220 50.0
AUR62026539 Chenopodium quinoa HOM05D007009 ORTHO05D008451 4.7e-46 188.7 201 53.2
FAN22G1672 Fragaria x ananassa HOM05D007009 ORTHO05D008451 4.7e-46 188.7 184 54.9
FAN17G0686 Fragaria x ananassa HOM05D007009 ORTHO05D008451 1.1e-45 187.6 185 54.1
TPR.G26720 Trifolium pratense HOM05D007009 ORTHO05D008451 1.8e-45 186.8 177 56.5
THA.LOC104808792 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 2.0e-44 183.3 192 49.5
Aa31LG4G10880 Aethionema arabicum HOM05D007009 ORTHO05D008451 7.6e-44 181.4 186 50.5
Hund25306 Selenicereus undatus HOM05D007009 ORTHO05D008451 7.6e-44 181.4 166 56.0
Peaxi162Scf00828g00312 Petunia axillaris HOM05D007009 ORTHO05D008451 9.9e-44 181.0 178 53.9
RcHm_v2.0_Chr4g0444991 Rosa chinensis HOM05D007009 ORTHO05D008451 6.4e-43 178.3 186 53.2
SalBow2G0075 Salvia bowleyana HOM05D007009 ORTHO05D008451 6.4e-43 178.3 176 56.2
BolC6t39457H Brassica oleracea HOM05D007009 ORTHO05D008451 8.4e-43 177.9 177 53.1
C06p43850 Brassica napus HOM05D007009 ORTHO05D008451 1.1e-42 177.6 179 54.2
Carub.0002s1666 Capsella rubella HOM05D007009 ORTHO05D008451 1.9e-42 176.8 186 51.6
MD16G1083100 Malus domestica HOM05D007009 ORTHO05D008451 1.9e-42 176.8 204 53.9
Sc11g0001470 Simmondsia chinensis HOM05D007009 ORTHO05D008451 1.9e-42 176.8 204 49.5
MSTRG.7846 Avicennia marina HOM05D007009 ORTHO05D008451 5.4e-42 175.3 182 52.7
Potri.008G191700 Populus trichocarpa HOM05D007009 ORTHO05D008451 1.2e-41 174.1 179 57.0
Migut.L01370 Erythranthe guttata HOM05D007009 ORTHO05D008451 3.5e-41 172.6 180 51.1
BcaC08g46448 Brassica carinata HOM05D007009 ORTHO05D008451 4.6e-41 172.2 177 52.5
Potri.010G039466 Populus trichocarpa HOM05D007009 ORTHO05D008451 1.7e-40 170.2 174 55.2
CARHR063080 Cardamine hirsuta HOM05D007009 ORTHO05D008451 3.0e-40 169.5 200 47.0
Ca_15204_v3 Cicer arietinum L. HOM05D007009 ORTHO05D008451 5.1e-40 168.7 136 64.7
Haze_12109 Corylus avellana HOM05D007009 ORTHO05D008451 5.1e-40 168.7 158 58.9
MELO3C012041.2 Cucumis melo HOM05D007009 ORTHO05D008451 8.6e-40 167.9 153 56.9
AL2G29220 Arabidopsis lyrata HOM05D007009 ORTHO05D008451 1.1e-39 167.5 184 48.9
AT1G69980 Arabidopsis thaliana HOM05D007009 ORTHO05D008451 2.1e-38 163.3 186 50.0
Duzib268G1291 Durio zibethinus HOM05D007009 ORTHO05D008451 1.4e-37 160.6 173 51.4
Cpa.g.sc5.312 Carica papaya HOM05D007009 ORTHO05D008451 8.9e-37 157.9 141 60.3
vmacro01210 Vaccinium macrocarpon HOM05D007009 ORTHO05D008451 1.2e-36 157.5 301 38.2
Rhsim12G0053000 Rhododendron simsii HOM05D007009 ORTHO05D008451 3.4e-36 156.0 187 49.7
BcaB03g14776 Brassica carinata HOM05D007009 ORTHO05D008451 9.9e-36 154.5 191 49.2
VMungo1215G0662 Vigna mungo HOM05D007009 ORTHO05D008451 2.9e-35 152.9 137 58.4
Lj6A798T55 Lonicera japonica HOM05D007009 ORTHO05D008451 1.1e-34 151.0 140 56.4
Psat2g116400 Pisum sativum HOM05D007009 ORTHO05D008451 1.2e-33 147.5 138 56.5
Sabra10G0027300 Salix brachista HOM05D007009 ORTHO05D008451 6.0e-33 145.2 232 41.4
A07p36430 Brassica napus HOM05D007009 ORTHO05D008451 1.0e-32 144.4 172 48.8
EL10Ac6g13085 Beta vulgaris HOM05D007009 ORTHO05D008451 3.9e-32 142.5 166 50.0
DCAR_026574 Daucus carota HOM05D007009 ORTHO05D008451 3.9e-32 142.5 155 50.3
HanXRQChr08g0209091 Helianthus annuus HOM05D007009 ORTHO05D008451 5.1e-32 142.1 173 46.8
Os09g0560400 Oryza sativa ssp. japonica HOM05D007009 ORTHO05D008451 5.6e-31 138.7 165 46.1
SGA_v2.0_scaffold166G38305 Striga asiatica HOM05D007009 ORTHO05D008451 1.6e-30 137.1 155 47.7
CDE10G1217 Ceratophyllum demersum HOM05D007009 ORTHO05D008451 1.4e-29 134.0 149 53.0
Zm00001eb104690 Zea mays HOM05D007009 ORTHO05D008451 1.4e-29 134.0 171 45.0
Phvul.002G078700 Phaseolus vulgaris HOM05D007009 ORTHO05D008451 1.5e-28 130.6 178 42.7
AUR62039445 Chenopodium quinoa HOM05D007009 ORTHO05D008451 2.2e-27 126.7 139 51.1
Lsat_1_v5_gn_8_161781 Lactuca sativa HOM05D007009 ORTHO05D008451 2.9e-27 126.3 189 39.2
unitig_8.g2944 Utricularia gibba HOM05D007009 ORTHO05D008451 4.9e-27 125.6 148 49.3
Mapoly0049s0134 Marchantia polymorpha HOM05D007009 ORTHO05D008451 2.1e-25 120.2 172 38.4
BcaB03g14779 Brassica carinata HOM05D007009 ORTHO05D008451 4.6e-25 119.0 153 48.4
ECA233G5592 Erigeron canadensis HOM05D007009 ORTHO05D008451 1.9e-23 113.6 160 43.1
Pp3c4_16120 Physcomitrium patens HOM05D007009 ORTHO05D008451 2.0e-20 103.6 174 35.6
MBI15_g31419_MAGBIO Magnolia biondii HOM05D007009 ORTHO05D008451 2.6e-20 103.2 102 54.9
BolC8t48483H Brassica oleracea HOM05D007009 ORTHO05D008451 1.6e-14 84.0 83 48.2
C03p84900 Brassica napus HOM05D000455 ORTHO05D008451 1.8e-13 80.5 69 56.5
BolC3t20782H Brassica oleracea HOM05D000455 ORTHO05D008451 1.8e-13 80.5 69 56.5
THA.LOC104822186 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 4.5e-12 75.9 147 36.1
CSS0007469 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 4.6e-09 65.9 66 50.0
SEGI_38065 Sequoiadendron giganteum HOM05D007009 ORTHO05D008451 1.3e-08 64.3 124 32.3
BraA03t15512Z Brassica rapa HOM05D007009 ORTHO05D031827 5.1e-08 62.4 83 42.2


User provided reference genes

Program Settings