Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G03117 Aquilegia oxysepala HOM05D003533 ORTHO05D004009 1.8e-38 162.2 86 100.0
QL10p012332 Quercus lobata HOM05D003533 ORTHO05D004009 2.6e-24 115.2 84 69.0
TAR629G1875 Trochodendron aralioides HOM05D003533 ORTHO05D004009 3.3e-24 114.8 85 69.4
TAR622G1413 Trochodendron aralioides HOM05D003533 ORTHO05D004009 4.1e-22 107.8 85 64.7
Thecc.03G004000 Theobroma cacao HOM05D003533 ORTHO05D004009 1.0e-20 103.2 89 60.7
Thecc.03G004200 Theobroma cacao HOM05D003533 ORTHO05D004009 1.3e-20 102.8 89 60.7
Duzib084G0973 Durio zibethinus HOM05D003533 ORTHO05D004009 2.9e-20 101.7 89 61.8
Hma1.2p1_0002F.1_g002860 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 6.5e-20 100.5 88 61.4
CiPaw.06G076100 Carya illinoinensis HOM05D003533 ORTHO05D004009 3.2e-19 98.2 86 62.8
CSS0013527 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 5.5e-19 97.4 86 64.0
CSS0016862 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 5.5e-19 97.4 86 64.0
CiPaw.06G076300 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.2e-18 96.3 86 61.6
ECA247G1125 Erigeron canadensis HOM05D003533 ORTHO05D004009 2.7e-18 95.1 87 59.8
QL03p067197 Quercus lobata HOM05D003533 ORTHO05D004009 2.7e-18 95.1 83 60.2
CiPaw.06G076000 Carya illinoinensis HOM05D003533 ORTHO05D004009 3.6e-18 94.7 86 61.6
CiPaw.06G076200 Carya illinoinensis HOM05D003533 ORTHO05D004009 3.6e-18 94.7 86 61.6
PSO013G0065 Papaver somniferum HOM05D003533 ORTHO05D004009 4.7e-18 94.4 85 56.5
TWI15G0955 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 6.1e-18 94.0 87 59.8
Lsat_1_v5_gn_1_12101 Lactuca sativa HOM05D003533 ORTHO05D004009 8.0e-18 93.6 88 56.8
CiPaw.12G022900 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.0e-17 93.2 85 58.8
Manes.06G100300 Manihot esculenta HOM05D003533 ORTHO05D004009 1.0e-17 93.2 88 62.5
Hma1.2p1_0160F.1_g070540 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 2.3e-17 92.0 86 58.1
PSO013G0048 Papaver somniferum HOM05D003533 ORTHO05D004009 2.3e-17 92.0 89 59.6
CANSAT54G2961 Cannabis sativa HOM05D003533 ORTHO05D004009 6.8e-17 90.5 79 62.0
MBI14_g31145_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 1.2e-16 89.7 84 52.4
Manes.14G070400 Manihot esculenta HOM05D003533 ORTHO05D004009 1.2e-16 89.7 87 58.6
Lj4g0015145 Lotus japonicus HOM05D003533 ORTHO05D004009 1.5e-16 89.4 89 53.9
MELO3C017124.2 Cucumis melo HOM05D003533 ORTHO05D004009 2.6e-16 88.6 86 59.3
TWI81G0654 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 3.4e-16 88.2 86 59.3
HanXRQChr09g0237871 Helianthus annuus HOM05D003533 ORTHO05D004009 5.7e-16 87.4 87 55.2
Eucgr.B00337 Eucalyptus grandis HOM05D003533 ORTHO05D004009 1.3e-15 86.3 85 57.6
Nitab4.5_0003386g0040 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.3e-15 86.3 82 54.9
Glyma.06G186200 Glycine max HOM05D003533 ORTHO05D004009 2.8e-15 85.1 80 58.8
Sopen03g032860 Solanum pennellii HOM05D003533 ORTHO05D004009 6.3e-15 84.0 84 52.4
Gohir.D05G321600 Gossypium hirsutum HOM05D003533 ORTHO05D004009 8.3e-15 83.6 84 54.8
Gorai.009G345100 Gossypium raimondii HOM05D003533 ORTHO05D004009 8.3e-15 83.6 84 54.8
MBI14_g31147_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 1.1e-14 83.2 84 54.8
Oeu005054.1 Olea europaea HOM05D003533 ORTHO05D004009 1.1e-14 83.2 79 59.5
Gohir.A05G319400 Gossypium hirsutum HOM05D003533 ORTHO05D004009 1.4e-14 82.8 84 54.8
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 1.4e-14 82.8 81 59.3
Oeu005690.1 Olea europaea HOM05D003533 ORTHO05D004009 1.8e-14 82.4 79 58.2
vmacro16587 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 1.8e-14 82.4 86 54.7
Migut.I00058 Erythranthe guttata HOM05D003533 ORTHO05D004009 2.4e-14 82.0 75 62.7
COL.COLO4_21432 Corchorus olitorius HOM05D003533 ORTHO05D004009 4.1e-14 81.3 92 55.4
Glyma.04G178500 Glycine max HOM05D003533 ORTHO05D004009 4.1e-14 81.3 80 58.8
COL.COLO4_37881 Corchorus olitorius HOM05D003533 ORTHO05D004009 7.0e-14 80.5 84 54.8
Lalb_Chr12g0201361 Lupinus albus HOM05D003533 ORTHO05D004009 9.1e-14 80.1 89 52.8
Phvul.003G196800 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 1.2e-13 79.7 79 57.0
MD16G1084900 Malus domestica HOM05D003533 ORTHO05D004009 2.0e-13 79.0 79 57.0
Glyma.05G033600 Glycine max HOM05D003533 ORTHO05D004009 2.7e-13 78.6 89 52.8
MD06G1181300 Malus domestica HOM05D003533 ORTHO05D004009 2.7e-13 78.6 89 51.7
MD14G1187200 Malus domestica HOM05D003533 ORTHO05D004009 2.7e-13 78.6 89 52.8
Oeu017591.1 Olea europaea HOM05D003533 ORTHO05D004009 2.7e-13 78.6 86 51.2
Cc11_g14110 Coffea canephora HOM05D003533 ORTHO05D004009 3.5e-13 78.2 84 48.8
Glyma.17G093500 Glycine max HOM05D003533 ORTHO05D004009 3.5e-13 78.2 89 52.8
Nitab4.5_0002059g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 3.5e-13 78.2 84 52.4
Rhsim12G0161500 Rhododendron simsii HOM05D003533 ORTHO05D004009 3.5e-13 78.2 86 53.5
Solyc03g113810.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 4.5e-13 77.8 84 51.2
Prupe.1G261100 Prunus persica HOM05D003533 ORTHO05D004009 7.7e-13 77.0 89 49.4
Ah.02g112790 Amaranthus hybridus HOM05D003533 ORTHO05D004009 1.0e-12 76.6 93 63.4
FAN07G1024 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.0e-12 76.6 86 53.5
FAN22G0766 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.0e-12 76.6 86 53.5
Medtr4g106500 Medicago truncatula HOM05D003533 ORTHO05D004009 1.0e-12 76.6 87 49.4
Peaxi162Scf01141g00003 Petunia axillaris HOM05D003533 ORTHO05D004009 1.3e-12 76.3 91 50.5
CSS0048422 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 1.7e-12 75.9 87 52.9
Lsat_1_v5_gn_1_11280 Lactuca sativa HOM05D003533 ORTHO05D004009 1.7e-12 75.9 83 53.0
Lj1g0014022 Lotus japonicus HOM05D003533 ORTHO05D004009 2.3e-12 75.5 80 52.5
TPR.G37447 Trifolium pratense HOM05D003533 ORTHO05D004009 2.3e-12 75.5 82 50.0
FvH4_4g35190 Fragaria vesca HOM05D003533 ORTHO05D004009 2.9e-12 75.1 86 52.3
FAN12G1992 Fragaria x ananassa HOM05D003533 ORTHO05D004009 2.9e-12 75.1 86 52.3
Lalb_Chr12g0201351 Lupinus albus HOM05D003533 ORTHO05D004009 2.9e-12 75.1 89 48.3
MBI14_g31148_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D011084 3.8e-12 74.7 79 53.2
Nitab4.5_0002059g0090 Nicotiana tabacum HOM05D003533 ORTHO05D004009 3.8e-12 74.7 93 52.7
AL5G27512 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 5.0e-12 74.3 79 54.4
PGSC0003DMG400024583 Solanum tuberosum HOM05D003533 ORTHO05D004009 5.0e-12 74.3 84 50.0
Medtr3g078420 Medicago truncatula HOM05D003533 ORTHO05D004009 6.6e-12 73.9 81 50.6
Phvul.009G182200 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 8.6e-12 73.6 80 52.5
Prupe.5G179600 Prunus persica HOM05D003533 ORTHO05D004009 8.6e-12 73.6 79 53.2
RcHm_v2.0_Chr4g0444801 Rosa chinensis HOM05D003533 ORTHO05D004009 8.6e-12 73.6 86 51.2
Thecc.02G240400 Theobroma cacao HOM05D003533 ORTHO05D004009 8.6e-12 73.6 83 51.8
CDE07G1253 Ceratophyllum demersum HOM05D000502 ORTHO05D000356 1.1e-11 73.2 76 53.9
FAN18G0586 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.1e-11 73.2 91 48.4
Sc04g0002090 Simmondsia chinensis HOM05D003533 ORTHO05D004009 1.5e-11 72.8 91 53.8
Aa31LG4G16780 Aethionema arabicum HOM05D003533 ORTHO05D004009 1.9e-11 72.4 79 55.7
Psat0s489g0040 Pisum sativum HOM05D003533 ORTHO05D004009 3.3e-11 71.6 80 50.0
Cfa009093 Carpinus fangiana HOM05D003533 ORTHO05D004009 4.2e-11 71.2 89 50.6
Ca_16210_v3 Cicer arietinum L. HOM05D003533 ORTHO05D004009 4.2e-11 71.2 80 48.8
TPR.G31485 Trifolium pratense HOM05D003533 ORTHO05D004009 4.2e-11 71.2 81 49.4
Nitab4.5_0002312g0110 Nicotiana tabacum HOM05D003533 ORTHO05D004009 5.5e-11 70.9 78 50.0
unitig_22.g6479 Utricularia gibba HOM05D003533 ORTHO05D004009 5.5e-11 70.9 88 45.5
Zm00001eb254120 Zea mays HOM05D003533 ORTHO05D004009 5.5e-11 70.9 80 50.0
Carub.0005s1428 Capsella rubella HOM05D003533 ORTHO05D004009 7.2e-11 70.5 79 51.9
FAN17G1844 Fragaria x ananassa HOM05D003533 ORTHO05D004009 7.2e-11 70.5 86 50.0
Nitab4.5_0002312g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 9.5e-11 70.1 94 50.0
Sed0002579 Sechium edule HOM05D003533 ORTHO05D004009 9.5e-11 70.1 85 48.2
Ciclev10023101m.g Citrus clementina HOM05D003533 ORTHO05D004009 1.2e-10 69.7 89 49.4
SalBow5G4118 Salvia bowleyana HOM05D003533 ORTHO05D004009 1.2e-10 69.7 46 67.4
Cc11_g14120 Coffea canephora HOM05D003533 ORTHO05D004009 1.6e-10 69.3 80 58.8
CsaV3_1G001820 Cucumis sativus L. HOM05D003533 ORTHO05D004009 1.6e-10 69.3 85 48.2
FAN13G2147 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.6e-10 69.3 90 48.9
ATR0712G093 Amborella trichopoda HOM05D003533 ORTHO05D004009 2.1e-10 68.9 79 50.6
CARHR019640 Cardamine hirsuta HOM05D003533 ORTHO05D004009 2.1e-10 68.9 86 48.8
Thhalv10010873m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 2.8e-10 68.6 79 60.8
Rhsim12G0161300 Rhododendron simsii HOM05D003533 ORTHO05D004009 2.8e-10 68.6 76 53.9
CAN.G159.12 Capsicum annuum HOM05D003533 ORTHO05D004009 3.6e-10 68.2 81 50.6
CiPaw.11G032200 Carya illinoinensis HOM05D003533 ORTHO05D004009 3.6e-10 68.2 88 48.9
Actinidia19080 Actinidia chinensis HOM05D003533 ORTHO05D004009 6.1e-10 67.4 77 53.2
ATR0712G042 Amborella trichopoda HOM05D003533 ORTHO05D004009 6.1e-10 67.4 78 46.2
Os02g0740600 Oryza sativa ssp. japonica HOM05D003533 ORTHO05D004009 6.1e-10 67.4 79 49.4
BcaB07g31922 Brassica carinata HOM05D003533 ORTHO05D004009 8.0e-10 67.0 84 46.4
PGR083G0433 Punica granatum HOM05D003533 ORTHO05D004009 8.0e-10 67.0 86 47.7
Rhsim12G0161400 Rhododendron simsii HOM05D003533 ORTHO05D004009 1.0e-09 66.6 83 51.8
AT1G19020 Arabidopsis thaliana HOM05D003533 ORTHO05D004009 1.4e-09 66.2 86 46.5
Migut.L01388 Erythranthe guttata HOM05D003533 ORTHO05D004009 1.4e-09 66.2 90 44.4
SalBow2G1603 Salvia bowleyana HOM05D003533 ORTHO05D004009 2.3e-09 65.5 83 44.6
SalBow2G3186 Salvia bowleyana HOM05D003533 ORTHO05D004009 2.3e-09 65.5 83 44.6
Sp5g13860 Schrenkiella parvula HOM05D003533 ORTHO05D004009 2.3e-09 65.5 79 53.2
DCAR_026103 Daucus carota HOM05D003533 ORTHO05D004009 3.0e-09 65.1 84 50.0
AL1G31580 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 6.8e-09 63.9 83 44.6
BcaB03g12939 Brassica carinata HOM05D003533 ORTHO05D004009 6.8e-09 63.9 80 46.2
BcaB03g14468 Brassica carinata HOM05D003533 ORTHO05D004009 6.8e-09 63.9 81 45.7
Lsat_1_v5_gn_1_11220 Lactuca sativa HOM05D003533 ORTHO05D004009 6.8e-09 63.9 80 48.8
Eucgr.K02881 Eucalyptus grandis HOM05D003533 ORTHO05D004009 8.9e-09 63.5 84 42.9
Thhalv10009213m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 8.9e-09 63.5 87 50.6
Os06g0239200 Oryza sativa ssp. japonica HOM05D003533 ORTHO05D004009 1.2e-08 63.2 78 53.8
A06p15230 Brassica napus HOM05D003533 ORTHO05D004009 1.5e-08 62.8 84 51.2
BraA06t24637Z Brassica rapa HOM05D003533 ORTHO05D004009 1.5e-08 62.8 84 51.2
Solyc05g006390.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 1.5e-08 62.8 76 50.0
Sopen05g002310 Solanum pennellii HOM05D003533 ORTHO05D004009 1.5e-08 62.8 76 50.0
Cfa019066 Carpinus fangiana HOM05D003533 ORTHO05D004009 2.0e-08 62.4 85 47.1
BcaC07g41276 Brassica carinata HOM05D003533 ORTHO05D004009 4.4e-08 61.2 86 51.2
BraA09t41332Z Brassica rapa HOM05D003533 ORTHO05D004009 4.4e-08 61.2 78 46.2
Aa31LG7G3800 Aethionema arabicum HOM05D006783 ORTHO05D008330 5.7e-08 60.8 72 41.7
ECA247G3580 Erigeron canadensis HOM05D003533 ORTHO05D004009 5.7e-08 60.8 86 52.3
Sp1g16980 Schrenkiella parvula HOM05D003533 ORTHO05D004009 5.7e-08 60.8 86 43.0
A08p30040 Brassica napus HOM05D003533 ORTHO05D004009 7.5e-08 60.5 76 46.1
C08p42830 Brassica napus HOM05D003533 ORTHO05D004009 7.5e-08 60.5 78 44.9
BolC8t51839H Brassica oleracea HOM05D003533 ORTHO05D004009 7.5e-08 60.5 78 44.9
BraA08t34939Z Brassica rapa HOM05D003533 ORTHO05D004009 7.5e-08 60.5 76 46.1
Peaxi162Scf00017g00254 Petunia axillaris HOM05D003533 ORTHO05D004009 9.8e-08 60.1 61 57.4
PGSC0003DMG400022647 Solanum tuberosum HOM05D003533 ORTHO05D004009 9.8e-08 60.1 80 46.2
A09p59550 Brassica napus HOM05D003533 ORTHO05D004009 1.7e-07 59.3 84 41.7
CARHR156900 Cardamine hirsuta HOM05D003533 ORTHO05D004009 1.7e-07 59.3 78 56.4
Oeu060842.1 Olea europaea HOM05D003533 ORTHO05D004009 1.7e-07 59.3 83 44.6
Actinidia34961 Actinidia chinensis HOM05D003533 ORTHO05D004009 2.8e-07 58.5 85 48.2
ATR0824G240 Amborella trichopoda HOM05D003533 ORTHO05D004009 3.7e-07 58.2 80 40.0
C08p19120 Brassica napus HOM05D003533 ORTHO05D004009 4.9e-07 57.8 48 60.4
Ciclev10033215m.g Citrus clementina HOM05D003533 ORTHO05D004009 1.1e-06 56.6 81 45.7
Eucgr.C02738 Eucalyptus grandis HOM05D003533 ORTHO05D004009 1.1e-06 56.6 84 42.9
BolC8t49535H Brassica oleracea HOM05D003533 ORTHO05D004009 2.4e-06 55.5 48 58.3
Migut.E00134 Erythranthe guttata HOM05D003533 ORTHO05D004009 2.4e-06 55.5 83 42.2
HanXRQChr09g0271891 Helianthus annuus HOM05D003533 ORTHO05D004009 2.4e-06 55.5 84 42.9
BcaC05g25801 Brassica carinata HOM05D003533 ORTHO05D004009 3.1e-06 55.1 84 48.8
BcaC05g25802 Brassica carinata HOM05D003533 ORTHO05D004009 3.1e-06 55.1 84 48.8
C05p17410 Brassica napus HOM05D003533 ORTHO05D004009 3.1e-06 55.1 84 48.8
BolC5t30441H Brassica oleracea HOM05D003533 ORTHO05D004009 3.1e-06 55.1 84 48.8
vmacro16586 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 4.1e-06 54.7 64 53.1
DCAR_016506 Daucus carota HOM05D003533 ORTHO05D004009 7.0e-06 53.9 86 41.9


User provided reference genes

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