Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G03071 Aquilegia oxysepala HOM05D003212 ORTHO05D003959 6.7e-73 277.3 148 100.0
Aqoxy2G00340 Aquilegia oxysepala HOM05D003212 ORTHO05D003959 8.2e-71 270.4 146 99.3
Nn7g36634 Nelumbo nucifera HOM05D003212 ORTHO05D003959 1.2e-61 240.0 137 91.2
TAR369G1042 Trochodendron aralioides HOM05D003212 ORTHO05D003959 6.5e-60 234.2 137 89.1
Glyma.11G154200 Glycine max HOM05D003212 ORTHO05D003959 5.5e-59 231.1 139 84.9
Medtr1g025060 Medicago truncatula HOM05D003212 ORTHO05D003959 7.2e-59 230.7 142 83.1
TWI38G0920 Tripterygium wilfordii HOM05D003212 ORTHO05D003959 3.6e-58 228.4 140 85.0
Medtr3g017580 Medicago truncatula HOM05D003212 ORTHO05D003959 6.1e-58 227.6 142 82.4
Phvul.005G029300 Phaseolus vulgaris HOM05D003212 ORTHO05D003959 8.0e-58 227.3 142 81.7
Aa31LG1G5360 Aethionema arabicum HOM05D003212 ORTHO05D003959 1.4e-57 226.5 140 82.9
Ca_23514_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 1.4e-57 226.5 142 81.7
Lalb_Chr14g0366121 Lupinus albus HOM05D003212 ORTHO05D003959 2.3e-57 225.7 142 80.3
PSO384G1532 Papaver somniferum HOM05D003212 ORTHO05D003959 3.0e-57 225.3 138 84.8
VMungo1080G0024 Vigna mungo HOM05D003212 ORTHO05D003959 3.0e-57 225.3 142 81.7
Ca_18881_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 6.7e-57 224.2 142 80.3
TPR.G17794 Trifolium pratense HOM05D003212 ORTHO05D003959 6.7e-57 224.2 140 81.4
PGR031G0586 Punica granatum HOM05D003212 ORTHO05D003959 8.8e-57 223.8 138 84.1
Psat5g219440 Pisum sativum HOM05D003212 ORTHO05D003959 1.2e-56 223.4 142 78.9
arahy.Tifrunner.gnm1.ann1.HRMJ8R Arachis hypogaea HOM05D003212 ORTHO05D003959 1.5e-56 223.0 142 81.0
Atru.chr12.1386 Acer truncatum HOM05D003212 ORTHO05D003959 2.0e-56 222.6 142 81.7
Ca_10473_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 2.0e-56 222.6 137 82.5
Lj3g0024329 Lotus japonicus HOM05D003212 ORTHO05D003959 2.0e-56 222.6 142 79.6
arahy.Tifrunner.gnm1.ann1.HVGJ4H Arachis hypogaea HOM05D003212 ORTHO05D003959 2.6e-56 222.2 142 81.0
AL5G35520 Arabidopsis lyrata HOM05D003212 ORTHO05D003959 3.3e-56 221.9 140 81.4
Sp5g07950 Schrenkiella parvula HOM05D003212 ORTHO05D003959 3.3e-56 221.9 140 82.1
arahy.Tifrunner.gnm1.ann1.J24RTT Arachis hypogaea HOM05D003212 ORTHO05D003959 5.7e-56 221.1 137 81.8
CARHR164370 Cardamine hirsuta HOM05D003212 ORTHO05D003959 5.7e-56 221.1 140 81.4
Lalb_Chr03g0032831 Lupinus albus HOM05D003212 ORTHO05D003959 5.7e-56 221.1 141 80.1
Phvul.011G207800 Phaseolus vulgaris HOM05D003212 ORTHO05D003959 5.7e-56 221.1 137 81.8
BcaC08g44683 Brassica carinata HOM05D003212 ORTHO05D003959 7.5e-56 220.7 140 80.7
A07p22130 Brassica napus HOM05D003212 ORTHO05D003959 7.5e-56 220.7 140 81.4
C06p22180 Brassica napus HOM05D003212 ORTHO05D003959 7.5e-56 220.7 140 80.7
BolC6t37404H Brassica oleracea HOM05D003212 ORTHO05D003959 7.5e-56 220.7 140 80.7
Lj3g0002083 Lotus japonicus HOM05D003212 ORTHO05D003959 7.5e-56 220.7 137 82.5
Medtr8g038390 Medicago truncatula HOM05D003212 ORTHO05D003959 7.5e-56 220.7 137 81.0
AT3G54470 Arabidopsis thaliana HOM05D003212 ORTHO05D003959 9.7e-56 220.3 140 81.4
PSO339G4798 Papaver somniferum HOM05D003212 ORTHO05D003959 9.7e-56 220.3 138 82.6
BcaB02g07736 Brassica carinata HOM05D003212 ORTHO05D003959 1.3e-55 219.9 141 80.9
BraA07t29896Z Brassica rapa HOM05D003212 ORTHO05D003959 1.3e-55 219.9 140 81.4
Thhalv10010334m.g Eutrema salsugineum HOM05D003212 ORTHO05D003959 1.3e-55 219.9 140 81.4
arahy.Tifrunner.gnm1.ann1.28N5NC Arachis hypogaea HOM05D003212 ORTHO05D003959 1.7e-55 219.5 137 81.0
ClCG01G007740 Citrullus lanatus HOM05D003212 ORTHO05D003959 1.7e-55 219.5 147 77.6
Glyma.13G198700 Glycine max HOM05D003212 ORTHO05D003959 1.7e-55 219.5 137 82.5
Manes.11G004200 Manihot esculenta HOM05D003212 ORTHO05D003959 1.7e-55 219.5 140 82.1
TPR.G36892 Trifolium pratense HOM05D003212 ORTHO05D003959 1.7e-55 219.5 137 80.3
CANSAT80G2392 Cannabis sativa HOM05D003212 ORTHO05D003959 2.8e-55 218.8 138 81.2
CsaV3_5G024820 Cucumis sativus L. HOM05D003212 ORTHO05D003959 2.8e-55 218.8 147 76.9
VMungo1127G0513 Vigna mungo HOM05D003212 ORTHO05D003959 2.8e-55 218.8 137 79.6
BolC4t25379H Brassica oleracea HOM05D003212 ORTHO05D003959 3.7e-55 218.4 143 79.0
FAN01G2682 Fragaria x ananassa HOM05D003212 ORTHO05D003959 3.7e-55 218.4 147 77.6
Lj7A581T52 Lonicera japonica HOM05D003212 ORTHO05D003959 3.7e-55 218.4 140 77.9
BcaC02g09067 Brassica carinata HOM05D003212 ORTHO05D003959 4.8e-55 218.0 143 79.0
C04p38050 Brassica napus HOM05D003212 ORTHO05D003959 4.8e-55 218.0 143 79.0
Dinv32034 Davidia involucrata HOM05D003212 ORTHO05D003959 4.8e-55 218.0 141 80.9
Lsat_1_v5_gn_5_157360 Lactuca sativa HOM05D003212 ORTHO05D003959 4.8e-55 218.0 147 74.8
EL10Ac2g02822 Beta vulgaris HOM05D003212 ORTHO05D003959 6.3e-55 217.6 146 76.7
Psat0s1718g0040 Pisum sativum HOM05D003212 ORTHO05D003959 6.3e-55 217.6 137 79.6
Hund13345 Selenicereus undatus HOM05D003212 ORTHO05D003959 6.3e-55 217.6 150 76.0
Potri.T125906 Populus trichocarpa HOM05D003212 ORTHO05D003959 8.2e-55 217.2 140 79.3
THA.LOC104824191 Tarenaya hassleriana HOM05D003212 ORTHO05D003959 8.2e-55 217.2 138 80.4
Potri.003G198501 Populus trichocarpa HOM05D003212 ORTHO05D003959 1.1e-54 216.9 140 78.6
Potri.001G026300 Populus trichocarpa HOM05D003212 ORTHO05D003959 1.4e-54 216.5 140 78.6
FvH4_7g02810 Fragaria vesca HOM05D003212 ORTHO05D003959 1.8e-54 216.1 147 76.9
FAN06G3951 Fragaria x ananassa HOM05D003212 ORTHO05D003959 1.8e-54 216.1 147 76.9
FAN10G3499 Fragaria x ananassa HOM05D003212 ORTHO05D003959 1.8e-54 216.1 147 76.9
Sed0013182 Sechium edule HOM05D003212 ORTHO05D003959 1.8e-54 216.1 147 74.8
CSS0010475 Camellia sinensis var. sinensis HOM05D003212 ORTHO05D003959 2.4e-54 215.7 143 78.3
CSS0011806 Camellia sinensis var. sinensis HOM05D003212 ORTHO05D003959 2.4e-54 215.7 143 78.3
Oeu003925.2 Olea europaea HOM05D003212 ORTHO05D003959 2.4e-54 215.7 139 77.0
Sabra03G0147800 Salix brachista HOM05D003212 ORTHO05D003959 2.4e-54 215.7 140 78.6
A04p05360 Brassica napus HOM05D003212 ORTHO05D003959 3.1e-54 215.3 140 79.3
BraA04t16236Z Brassica rapa HOM05D003212 ORTHO05D003959 3.1e-54 215.3 140 79.3
MELO3C005122.2 Cucumis melo HOM05D003212 ORTHO05D003959 4.1e-54 214.9 147 75.5
Hma1.2p1_0384F.1_g141010 Hydrangea macrophylla HOM05D003212 ORTHO05D003959 4.1e-54 214.9 143 77.6
Hund15723 Selenicereus undatus HOM05D003212 ORTHO05D003959 4.1e-54 214.9 145 76.6
Ah.12g062950 Amaranthus hybridus HOM05D003212 ORTHO05D003959 5.3e-54 214.5 143 76.2
Carub.0005s2109 Capsella rubella HOM05D003212 ORTHO05D003959 7.0e-54 214.2 138 79.0
BcaB02g08443 Brassica carinata HOM05D003212 ORTHO05D003959 9.1e-54 213.8 146 76.7
Migut.B01220 Erythranthe guttata HOM05D003212 ORTHO05D003959 1.2e-53 213.4 147 76.2
Sabra01G0019400 Salix brachista HOM05D003212 ORTHO05D003959 1.2e-53 213.4 140 78.6
SGA_v2.0_scaffold124G33627 Striga asiatica HOM05D003212 ORTHO05D003959 1.2e-53 213.4 139 77.7
Cc02_g26670 Coffea canephora HOM05D003212 ORTHO05D003959 1.6e-53 213.0 138 76.8
MD09G1262400 Malus domestica HOM05D003212 ORTHO05D003959 1.6e-53 213.0 143 76.2
Oeu056551.1 Olea europaea HOM05D003212 ORTHO05D003959 1.6e-53 213.0 138 77.5
Solyc11g068830.2 Solanum lycopersicum HOM05D003212 ORTHO05D003959 1.6e-53 213.0 141 75.9
RcHm_v2.0_Chr1g0323241 Rosa chinensis HOM05D003212 ORTHO05D003959 2.0e-53 212.6 139 78.4
ATR0789G118 Amborella trichopoda HOM05D003212 ORTHO05D003959 2.7e-53 212.2 137 78.1
Prupe.2G032600 Prunus persica HOM05D003212 ORTHO05D003959 2.7e-53 212.2 142 76.8
Oeu002655.1 Olea europaea HOM05D003212 ORTHO05D003959 3.5e-53 211.8 138 78.3
AUR62026849 Chenopodium quinoa HOM05D003212 ORTHO05D003959 4.5e-53 211.5 146 75.3
Sc11g0006540 Simmondsia chinensis HOM05D003212 ORTHO05D003959 4.5e-53 211.5 145 74.5
MSTRG.20521 Avicennia marina HOM05D003212 ORTHO05D003959 5.9e-53 211.1 138 78.3
Rhsim01G0123800 Rhododendron simsii HOM05D003212 ORTHO05D003959 5.9e-53 211.1 142 75.4
unitig_26.g9606 Utricularia gibba HOM05D003212 ORTHO05D003959 5.9e-53 211.1 145 75.9
PGSC0003DMG400019620 Solanum tuberosum HOM05D003212 ORTHO05D003959 7.7e-53 210.7 138 76.1
ECA248G3712 Erigeron canadensis HOM05D003212 ORTHO05D003959 1.0e-52 210.3 141 76.6
MSTRG.16992 Avicennia marina HOM05D003212 ORTHO05D003959 1.3e-52 209.9 146 76.0
CiPaw.14G006800 Carya illinoinensis HOM05D003212 ORTHO05D003959 1.3e-52 209.9 143 74.8
AUR62037200 Chenopodium quinoa HOM05D003212 ORTHO05D003959 1.3e-52 209.9 146 74.7
Haze_03071 Corylus avellana HOM05D003212 ORTHO05D003959 1.3e-52 209.9 142 76.1
SalBow5G4847 Salvia bowleyana HOM05D003212 ORTHO05D003959 1.3e-52 209.9 141 75.9
Ciclev10001014m.g Citrus clementina HOM05D003212 ORTHO05D003959 1.7e-52 209.5 142 75.4
Sopen11g027550 Solanum pennellii HOM05D003212 ORTHO05D003959 1.7e-52 209.5 141 75.2
CDE08G1532 Ceratophyllum demersum HOM05D003212 ORTHO05D003959 3.8e-52 208.4 139 78.4
DCAR_006596 Daucus carota HOM05D003212 ORTHO05D003959 5.0e-52 208.0 137 78.1
Nitab4.5_0000893g0050 Nicotiana tabacum HOM05D003212 ORTHO05D003959 5.0e-52 208.0 141 74.5
vmacro12692 Vaccinium macrocarpon HOM05D003212 ORTHO05D003959 5.0e-52 208.0 143 73.4
AUR62001997 Chenopodium quinoa HOM05D003212 ORTHO05D003959 1.5e-51 206.5 141 74.5
Sed0011268 Sechium edule HOM05D003212 ORTHO05D003959 1.5e-51 206.5 147 73.5
HanXRQChr01g0008251 Helianthus annuus HOM05D003212 ORTHO05D003959 5.5e-51 204.5 143 74.1
SalBow5G0323 Salvia bowleyana HOM05D003212 ORTHO05D003959 5.5e-51 204.5 141 74.5
QL04p014524 Quercus lobata HOM05D003212 ORTHO05D003959 7.2e-51 204.1 141 74.5
QL04p014886 Quercus lobata HOM05D003212 ORTHO05D003959 7.2e-51 204.1 141 74.5
SalBow5G4173 Salvia bowleyana HOM05D003212 ORTHO05D003959 7.2e-51 204.1 141 74.5
Peaxi162Scf01010g00217 Petunia axillaris HOM05D003212 ORTHO05D003959 2.1e-50 202.6 140 73.6
CAN.G745.39 Capsicum annuum HOM05D003212 ORTHO05D003959 2.7e-50 202.2 141 73.8
Atru.chr12.1389 Acer truncatum HOM05D003212 ORTHO05D003959 3.6e-50 201.8 143 73.4
Actinidia21523 Actinidia chinensis HOM05D003212 ORTHO05D003959 6.1e-50 201.1 142 71.8
HanXRQChr13g0406671 Helianthus annuus HOM05D003212 ORTHO05D003959 6.1e-50 201.1 138 72.5
CDE09G0923 Ceratophyllum demersum HOM05D003212 ORTHO05D003959 8.0e-50 200.7 139 75.5
Gohir.A04G028000 Gossypium hirsutum HOM05D003212 ORTHO05D003959 8.0e-50 200.7 140 71.4
Gohir.D05G360100 Gossypium hirsutum HOM05D003212 ORTHO05D003959 1.0e-49 200.3 140 71.4
Gorai.009G432600 Gossypium raimondii HOM05D003212 ORTHO05D003959 1.0e-49 200.3 140 71.4
Peaxi162Scf00010g03311 Petunia axillaris HOM05D003212 ORTHO05D003959 1.0e-49 200.3 137 73.7
Duzib268G1229 Durio zibethinus HOM05D003212 ORTHO05D003959 1.4e-49 199.9 140 70.7
COL.COLO4_09453 Corchorus olitorius HOM05D003212 ORTHO05D003959 2.3e-49 199.1 140 72.9
Gohir.A13G144600 Gossypium hirsutum HOM05D003212 ORTHO05D003959 4.0e-49 198.4 147 68.0
Pp3c3_16990 Physcomitrium patens HOM05D003212 ORTHO05D003959 6.8e-49 197.6 139 70.5
HPP92_003228 Vanilla planifolia HOM05D003212 ORTHO05D003959 8.8e-49 197.2 144 66.7
Duzib213G0398 Durio zibethinus HOM05D003212 ORTHO05D003959 1.5e-48 196.4 140 69.3
Migut.N01834 Erythranthe guttata HOM05D003212 ORTHO05D003959 1.5e-48 196.4 138 72.5
SEGI_05174 Sequoiadendron giganteum HOM05D003212 ORTHO05D003959 1.5e-48 196.4 137 70.8
Thecc.07G075400 Theobroma cacao HOM05D003212 ORTHO05D003959 1.5e-48 196.4 140 70.7
Gorai.013G167000 Gossypium raimondii HOM05D003212 ORTHO05D003959 2.0e-48 196.1 140 72.1
Mapoly0052s0107 Marchantia polymorpha HOM05D003212 ORTHO05D003959 2.6e-48 195.7 138 67.4
HPP92_003235 Vanilla planifolia HOM05D003212 ORTHO05D003959 4.4e-48 194.9 143 66.4
Gohir.D13G149300 Gossypium hirsutum HOM05D003212 ORTHO05D003959 9.8e-48 193.7 140 71.4
Ciclev10004916m.g Citrus clementina HOM05D003212 ORTHO05D003959 1.3e-47 193.4 127 77.2
SGA_v2.0_scaffold232G43508 Striga asiatica HOM05D003212 ORTHO05D003959 1.3e-47 193.4 138 69.6
SMO259G0031 Selaginella moellendorffii HOM05D003212 ORTHO05D003959 2.0e-45 186.0 137 68.6
MCO07G762 Micromonas commoda HOM05D003212 ORTHO05D003959 3.5e-45 185.3 143 64.3
Cre01.g048950 Chlamydomonas reinhardtii HOM05D003212 ORTHO05D003959 8.6e-44 180.6 141 63.1
Pp3c13_16830 Physcomitrium patens HOM05D003212 ORTHO05D003959 8.6e-44 180.6 139 66.2
AagrBONN_evm.TU.Sc2ySwM_117.3888 Anthoceros agrestis HOM05D003212 ORTHO05D003959 1.5e-43 179.9 143 63.6
CBR_g41363 Chara braunii HOM05D003212 ORTHO05D003959 2.8e-42 175.6 146 60.3
PRCOL_00000883 Prasinoderma coloniale HOM05D003212 ORTHO05D003959 2.3e-41 172.6 146 58.9
Os01g0951200 Oryza sativa ssp. japonica HOM05D003212 ORTHO05D003959 2.0e-40 169.5 140 60.7
BcaC02g12603 Brassica carinata HOM05D003212 ORTHO05D003959 6.6e-36 154.5 151 60.3
Os01g0951400 Oryza sativa ssp. japonica HOM05D003212 ORTHO05D003959 4.3e-35 151.8 140 52.9
Cpa.g.sc223.9 Carica papaya HOM05D003212 ORTHO05D003959 3.0e-33 145.6 94 80.9
Zm00001eb140930 Zea mays HOM05D003212 ORTHO05D003959 1.5e-32 143.3 140 53.6
Zm00001eb140940 Zea mays HOM05D003212 ORTHO05D003959 1.5e-32 143.3 140 55.0
Glyma.15G237000 Glycine max HOM05D003212 ORTHO05D003959 7.5e-32 141.0 90 80.0
Nitab4.5_0001135g0170 Nicotiana tabacum HOM05D003212 ORTHO05D003959 1.9e-30 136.3 93 73.1
SalBow5G1158 Salvia bowleyana HOM05D003212 ORTHO05D003959 5.4e-30 134.8 133 55.6
vmacro13746 Vaccinium macrocarpon HOM05D001576 ORTHO05D000401 3.1e-25 119.0 146 48.6
vmacro22863 Vaccinium macrocarpon HOM05D001576 ORTHO05D000401 3.1e-25 119.0 146 48.6
SMO181G0021 Selaginella moellendorffii HOM05D003212 ORTHO05D003959 9.2e-22 107.5 135 48.1
RhsimUnG0111600 Rhododendron simsii HOM05D001576 ORTHO05D000401 1.3e-20 103.6 146 41.8
Rhsim07G0066400 Rhododendron simsii HOM05D001576 ORTHO05D000401 3.0e-20 102.4 146 41.1
ECA232G0145 Erigeron canadensis HOM05D003212 ORTHO05D003959 6.2e-18 94.7 54 85.2
FAN03G0414 Fragaria x ananassa HOM05D003212 ORTHO05D003959 3.1e-17 92.4 54 79.6
Haze_03625 Corylus avellana HOM05D003212 ORTHO05D003959 8.9e-17 90.9 66 75.8
FvH4_4g15670 Fragaria vesca HOM05D013275 ORTHO05D003959 2.6e-16 89.4 60 80.0
AUR62003805 Chenopodium quinoa HOM05D003212 ORTHO05D003959 3.4e-16 89.0 54 75.9
FvH4_3g03840 Fragaria vesca HOM05D013275 ORTHO05D015659 7.5e-16 87.8 53 73.6
Ca_28375_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 8.3e-15 84.3 54 75.9
Ca_30130_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 8.3e-15 84.3 54 75.9
MD17G1257300 Malus domestica HOM05D003212 ORTHO05D003959 1.0e-12 77.4 54 66.7
RcHm_v2.0_Chr5g0023651 Rosa chinensis HOM05D003212 ORTHO05D015659 3.9e-12 75.5 46 76.1
RcHm_v2.0_Chr4g0435201 Rosa chinensis HOM05D003212 ORTHO05D015659 1.1e-11 73.9 46 73.9
MD17G1257400 Malus domestica HOM05D003212 ORTHO05D003959 1.2e-10 70.5 59 71.2
Atru.chr12.1029 Acer truncatum HOM05D003212 ORTHO05D003959 2.1e-10 69.7 54 63.0
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 8.9e-09 64.3 121 31.4
SMO250G0012 Selaginella moellendorffii HOM05D000515 ORTHO05D001911 8.4e-07 57.8 54 51.9
SMO259G0030 Selaginella moellendorffii HOM05D000515 ORTHO05D001911 3.2e-06 55.8 54 50.0


User provided reference genes

Program Settings