Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 2.4e-190 668.7 338 100.0
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 2.8e-114 416.0 343 63.8
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 1.7e-103 380.2 343 61.8
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 5.1e-100 368.6 344 57.3
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 5.1e-100 368.6 344 56.7
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 2.5e-99 366.3 344 57.0
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 4.7e-98 362.1 342 56.7
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 6.2e-98 361.7 344 56.7
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.1e-97 360.9 339 56.3
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 1.2e-96 357.5 343 57.4
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 2.9e-95 352.8 344 56.1
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 2.9e-95 352.8 343 55.1
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 4.1e-94 349.0 341 56.9
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 7.1e-94 348.2 345 53.9
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 7.1e-94 348.2 344 52.9
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 9.2e-94 347.8 345 53.0
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 6.0e-93 345.1 345 55.7
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 6.0e-93 345.1 354 52.8
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 1.0e-92 344.4 343 55.1
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 1.0e-92 344.4 343 55.1
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 1.7e-92 343.6 345 51.3
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 5.1e-92 342.0 343 53.6
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 1.5e-91 340.5 343 52.5
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 3.3e-91 339.3 343 53.6
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 4.3e-91 339.0 345 51.0
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 5.6e-91 338.6 344 53.2
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 2.8e-90 336.3 344 53.2
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 8.1e-90 334.7 344 50.3
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 8.1e-90 334.7 344 50.3
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 8.1e-90 334.7 354 52.3
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 1.4e-89 334.0 343 52.5
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 2.4e-89 333.2 344 50.0
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 2.0e-88 330.1 335 50.7
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 5.8e-88 328.6 344 52.3
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 5.8e-88 328.6 339 51.9
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 5.8e-88 328.6 339 51.3
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 9.9e-88 327.8 340 52.6
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 3.8e-87 325.9 343 51.3
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 1.2e-85 320.9 343 47.5
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 6.0e-85 318.5 280 57.1
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 7.8e-85 318.2 343 46.9
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.3e-84 317.4 343 47.2
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 3.9e-84 315.8 337 51.3
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 1.1e-83 314.3 344 49.1
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 5.6e-83 312.0 344 49.1
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 6.2e-82 308.5 346 51.7
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 8.1e-82 308.1 348 50.3
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 6.9e-81 305.1 345 49.0
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 1.2e-80 304.3 343 51.3
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 2.0e-80 303.5 343 49.9
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 5.8e-80 302.0 343 50.7
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 7.6e-80 301.6 343 50.7
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 9.9e-80 301.2 343 48.4
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 1.7e-79 300.4 343 50.7
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 2.9e-79 299.7 282 56.7
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 1.1e-78 297.7 343 51.0
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 1.9e-78 297.0 344 48.0
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 2.1e-77 293.5 343 46.9
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 2.7e-77 293.1 346 47.1
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 4.6e-77 292.4 343 46.9
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 6.0e-77 292.0 343 46.6
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 1.0e-76 291.2 338 48.2
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 1.3e-76 290.8 346 47.4
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 1.3e-76 290.8 346 47.4
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 6.7e-76 288.5 347 46.7
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 8.7e-76 288.1 320 49.4
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 1.5e-75 287.3 343 45.5
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 1.9e-75 287.0 343 45.5
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 2.5e-75 286.6 334 50.0
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 4.3e-75 285.8 340 46.8
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 7.4e-75 285.0 345 47.0
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 9.6e-75 284.6 308 49.7
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 1.6e-74 283.9 343 47.5
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 2.8e-74 283.1 343 46.4
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 2.8e-74 283.1 260 60.0
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 2.8e-74 283.1 343 46.4
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 2.8e-74 283.1 346 48.6
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 6.2e-74 282.0 346 47.1
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 8.1e-74 281.6 338 47.0
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 1.1e-73 281.2 346 45.1
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 1.4e-73 280.8 327 48.3
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 1.8e-73 280.4 346 46.2
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 1.8e-73 280.4 348 46.0
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 3.1e-73 279.6 308 50.0
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 5.3e-73 278.9 309 49.8
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 5.3e-73 278.9 343 44.6
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 6.9e-73 278.5 346 44.8
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 1.2e-72 277.7 343 46.4
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 1.5e-72 277.3 328 48.8
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 3.4e-72 276.2 343 45.2
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 7.6e-72 275.0 344 47.4
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 3.8e-71 272.7 353 45.6
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 1.4e-70 270.8 337 45.1
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 1.4e-70 270.8 334 46.1
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 1.9e-70 270.4 341 45.5
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 4.2e-70 269.2 295 50.8
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 4.2e-70 269.2 343 44.6
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 5.5e-70 268.9 342 43.9
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 7.1e-70 268.5 343 44.3
ECA246G1934 Erigeron canadensis HOM05D005107 ORTHO05D006200 9.3e-70 268.1 334 47.0
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 1.2e-69 267.7 342 45.3
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 1.6e-69 267.3 283 51.2
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 4.6e-69 265.8 347 43.8
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 6.0e-69 265.4 345 44.3
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 1.0e-68 264.6 343 45.2
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 1.8e-68 263.8 342 45.3
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 2.3e-68 263.5 344 44.8
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 3.0e-68 263.1 344 45.1
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 1.1e-67 261.2 343 42.6
TWI39G0316 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 1.1e-67 261.2 352 44.3
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 2.5e-67 260.0 344 44.8
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 3.3e-67 259.6 343 42.3
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 5.6e-67 258.8 342 44.7
Lj5A126T86 Lonicera japonica HOM05D005107 ORTHO05D006200 3.7e-66 256.1 277 49.5
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 1.4e-65 254.2 340 45.3
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 1.8e-65 253.8 343 45.5
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 2.4e-65 253.4 342 43.9
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 5.3e-65 252.3 343 42.6
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 9.0e-65 251.5 308 45.8
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 1.2e-64 251.1 332 45.2
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 2.6e-64 250.0 308 45.8
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 5.8e-64 248.8 338 44.7
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 1.3e-63 247.7 343 42.9
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 2.2e-63 246.9 287 47.0
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 1.4e-62 244.2 340 43.5
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 1.9e-62 243.8 342 43.6
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 1.6e-61 240.7 341 41.1
Migut.D01962 Erythranthe guttata HOM05D005107 ORTHO05D006200 9.7e-59 231.5 344 41.9
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 6.3e-58 228.8 281 42.7
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 7.6e-56 221.9 336 41.4
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 3.2e-54 216.5 323 39.6
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 4.8e-50 202.6 322 39.1
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 8.2e-50 201.8 301 42.2
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 2.6e-48 196.8 200 51.0
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 1.3e-47 194.5 330 37.6
ECA232G4933 Erigeron canadensis HOM05D005107 ORTHO05D006200 1.4e-46 191.0 345 37.7
ECA232G2224 Erigeron canadensis HOM05D005107 ORTHO05D006200 5.1e-44 182.6 244 41.4
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 9.7e-43 178.3 137 62.0
SGA_v2.0_scaffold90G27886 Striga asiatica HOM05D005107 ORTHO05D006200 1.5e-40 171.0 211 43.6
Eucgr.C04410 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.0e-39 168.3 137 59.9
Eucgr.C03135 Eucalyptus grandis HOM05D005107 ORTHO05D006200 8.5e-39 165.2 129 60.5
BcaB02g09719 Brassica carinata HOM05D005107 ORTHO05D006200 1.4e-36 157.9 343 34.4
HanXRQChr02g0035961 Helianthus annuus HOM05D005107 ORTHO05D006200 1.3e-31 141.4 277 36.8
Lsat_1_v5_gn_1_28200 Lactuca sativa HOM05D005107 ORTHO05D006200 3.8e-31 139.8 286 34.6
Duzib068G0452 Durio zibethinus HOM05D005107 ORTHO05D006200 1.0e-23 115.2 152 42.8
BcaC04g23368 Brassica carinata HOM05D005107 ORTHO05D006200 8.0e-21 105.5 103 49.5
Hma1.2p1_0522F.1_g171880 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 1.8e-09 67.8 39 76.9
SEGI_21940 Sequoiadendron giganteum HOM05D024261 ORTHO05D006200 1.3e-07 61.6 209 25.4


User provided reference genes

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