Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G02782 Aquilegia oxysepala HOM05D004440 ORTHO05D005183 4.1e-22 107.1 51 100.0
Aqoxy3G02967 Aquilegia oxysepala HOM05D004440 ORTHO05D005183 1.6e-21 105.1 51 98.0
AUR62040327 Chenopodium quinoa HOM05D004440 ORTHO05D005183 2.3e-20 101.3 51 94.1
AUR62043797 Chenopodium quinoa HOM05D004440 ORTHO05D005183 2.3e-20 101.3 51 94.1
Actinidia16933 Actinidia chinensis HOM05D004440 ORTHO05D005183 3.9e-20 100.5 51 92.2
Cpa.g.sc39.91 Carica papaya HOM05D004440 ORTHO05D005183 3.9e-20 100.5 51 90.2
Rhsim10G0022600 Rhododendron simsii HOM05D004440 ORTHO05D005183 3.9e-20 100.5 51 92.2
Thecc.04G008800 Theobroma cacao HOM05D004440 ORTHO05D005183 3.9e-20 100.5 51 92.2
vmacro05821 Vaccinium macrocarpon HOM05D004440 ORTHO05D005183 3.9e-20 100.5 51 92.2
DCAR_021682 Daucus carota HOM05D004440 ORTHO05D005183 5.1e-20 100.1 51 92.2
CANSAT64G0084 Cannabis sativa HOM05D004440 ORTHO05D005183 6.6e-20 99.8 51 92.2
HanXRQChr04g0103861 Helianthus annuus HOM05D004440 ORTHO05D005183 6.6e-20 99.8 51 92.2
Os06g0486800 Oryza sativa ssp. japonica HOM05D004440 ORTHO05D005183 6.6e-20 99.8 51 90.2
EL10Ac4g08574 Beta vulgaris HOM05D004440 ORTHO05D005183 8.6e-20 99.4 51 92.2
CiPaw.04G024700 Carya illinoinensis HOM05D004440 ORTHO05D005183 8.6e-20 99.4 51 90.2
Nitab4.5_0003337g0060 Nicotiana tabacum HOM05D004440 ORTHO05D005183 8.6e-20 99.4 51 90.2
Nitab4.5_0005176g0010 Nicotiana tabacum HOM05D004440 ORTHO05D005183 8.6e-20 99.4 51 90.2
GSVIVG01032479001 Vitis vinifera HOM05D004440 ORTHO05D005183 8.6e-20 99.4 51 90.2
MSTRG.3172 Avicennia marina HOM05D004440 ORTHO05D005183 1.1e-19 99.0 51 92.2
BcaB08g36947 Brassica carinata HOM05D004440 ORTHO05D005183 1.1e-19 99.0 51 90.2
BcaC04g19009 Brassica carinata HOM05D004440 ORTHO05D005183 1.1e-19 99.0 51 90.2
A10p23900 Brassica napus HOM05D004440 ORTHO05D005183 1.1e-19 99.0 51 90.2
BolC9t59075H Brassica oleracea HOM05D004440 ORTHO05D005183 1.1e-19 99.0 51 90.2
BraA10t44454Z Brassica rapa HOM05D004440 ORTHO05D005183 1.1e-19 99.0 51 90.2
ClCG10G014220 Citrullus lanatus HOM05D004440 ORTHO05D005183 1.1e-19 99.0 51 90.2
Glyma.13G168700 Glycine max HOM05D004440 ORTHO05D005183 1.1e-19 99.0 51 90.2
Glyma.19G009000 Glycine max HOM05D004440 ORTHO05D005183 1.1e-19 99.0 51 90.2
Glyma.19G009100 Glycine max HOM05D004440 ORTHO05D005183 1.1e-19 99.0 51 90.2
Prupe.3G284000 Prunus persica HOM05D004440 ORTHO05D005183 1.1e-19 99.0 51 88.2
Sed0024150 Sechium edule HOM05D004440 ORTHO05D005183 1.1e-19 99.0 51 90.2
Actinidia35741 Actinidia chinensis HOM05D004440 ORTHO05D005183 1.5e-19 98.6 51 90.2
C09p62370 Brassica napus HOM05D004440 ORTHO05D005183 1.5e-19 98.6 50 90.0
Lj7A591G80 Lonicera japonica HOM05D004440 ORTHO05D005183 1.5e-19 98.6 51 90.2
Medtr6g007170 Medicago truncatula HOM05D004440 ORTHO05D005183 1.5e-19 98.6 51 90.2
Psat1g056760 Pisum sativum HOM05D004440 ORTHO05D005183 1.5e-19 98.6 51 90.2
CAN.G206.32 Capsicum annuum HOM05D004440 ORTHO05D005183 1.9e-19 98.2 51 88.2
Cc07_g02270 Coffea canephora HOM05D004440 ORTHO05D005183 1.9e-19 98.2 51 88.2
Cc09_g06160 Coffea canephora HOM05D004440 ORTHO05D005183 1.9e-19 98.2 51 88.2
COL.COLO4_28947 Corchorus olitorius HOM05D004440 ORTHO05D005183 1.9e-19 98.2 51 90.2
Peaxi162Scf00129g01035 Petunia axillaris HOM05D004440 ORTHO05D005183 1.9e-19 98.2 51 88.2
Solyc02g086880.4 Solanum lycopersicum HOM05D004440 ORTHO05D005183 1.9e-19 98.2 51 88.2
Sopen02g031650 Solanum pennellii HOM05D004440 ORTHO05D005183 1.9e-19 98.2 51 88.2
PGSC0003DMG400000496 Solanum tuberosum HOM05D004440 ORTHO05D005183 1.9e-19 98.2 51 88.2
SGA_v2.0_scaffold135G34861 Striga asiatica HOM05D004440 ORTHO05D005183 1.9e-19 98.2 51 88.2
CARHR198530 Cardamine hirsuta HOM05D004440 ORTHO05D005183 2.5e-19 97.8 51 88.2
Ciclev10015585m.g Citrus clementina HOM05D004440 ORTHO05D005183 2.5e-19 97.8 51 88.2
CsaV3_3G042420 Cucumis sativus L. HOM05D004440 ORTHO05D005183 2.5e-19 97.8 51 88.2
Thhalv10013803m.g Eutrema salsugineum HOM05D004440 ORTHO05D005183 2.5e-19 97.8 51 88.2
Gohir.A07G219700 Gossypium hirsutum HOM05D004440 ORTHO05D005183 2.5e-19 97.8 51 90.2
Oeu062918.1 Olea europaea HOM05D004440 ORTHO05D005183 2.5e-19 97.8 51 88.2
Sp6g29260 Schrenkiella parvula HOM05D004440 ORTHO05D005183 2.5e-19 97.8 51 88.2
VMungo0464G0267 Vigna mungo HOM05D004440 ORTHO05D005183 2.5e-19 97.8 51 88.2
CDE06G1412 Ceratophyllum demersum HOM05D004440 ORTHO05D005183 3.3e-19 97.4 49 89.8
Ca_27954_v3 Cicer arietinum L. HOM05D004440 ORTHO05D005183 3.3e-19 97.4 51 88.2
MELO3C009956.2 Cucumis melo HOM05D004440 ORTHO05D005183 3.3e-19 97.4 51 86.3
Duzib147G0931 Durio zibethinus HOM05D004440 ORTHO05D005183 3.3e-19 97.4 51 88.2
Migut.H00121 Erythranthe guttata HOM05D004440 ORTHO05D005183 3.3e-19 97.4 51 90.2
Lj2g0017879 Lotus japonicus HOM05D004440 ORTHO05D005183 3.3e-19 97.4 51 88.2
Phvul.004G014800 Phaseolus vulgaris HOM05D004440 ORTHO05D005183 3.3e-19 97.4 51 86.3
Psat1g058600 Pisum sativum HOM05D004440 ORTHO05D005183 3.3e-19 97.4 51 90.2
TPR.G2289 Trifolium pratense HOM05D004440 ORTHO05D005183 3.3e-19 97.4 51 88.2
VMungo0464G0725 Vigna mungo HOM05D004440 ORTHO05D005183 3.3e-19 97.4 51 86.3
Carub.0006s1295 Capsella rubella HOM05D004440 ORTHO05D005183 5.6e-19 96.7 51 86.3
MD09G1034400 Malus domestica HOM05D004440 ORTHO05D005183 5.6e-19 96.7 51 86.3
MD17G1034800 Malus domestica HOM05D004440 ORTHO05D005183 5.6e-19 96.7 51 86.3
Manes.17G122100 Manihot esculenta HOM05D004440 ORTHO05D005183 5.6e-19 96.7 51 86.3
Sabra14G0123000 Salix brachista HOM05D004440 ORTHO05D005183 5.6e-19 96.7 49 87.8
SEGI_05498 Sequoiadendron giganteum HOM05D004440 ORTHO05D005183 5.6e-19 96.7 49 87.8
CSS0042726 Camellia sinensis var. sinensis HOM05D004440 ORTHO05D005183 7.3e-19 96.3 51 86.3
Gohir.D07G226500 Gossypium hirsutum HOM05D004440 ORTHO05D005183 7.3e-19 96.3 51 88.2
Gorai.001G261400 Gossypium raimondii HOM05D004440 ORTHO05D005183 7.3e-19 96.3 51 88.2
MBI16_g32801_MAGBIO Magnolia biondii HOM05D004440 ORTHO05D005183 7.3e-19 96.3 49 87.8
PGR083G1778 Punica granatum HOM05D004440 ORTHO05D005183 7.3e-19 96.3 51 86.3
Zm00001eb382240 Zea mays HOM05D004440 ORTHO05D005183 7.3e-19 96.3 51 86.3
Aqoxy2G03548 Aquilegia oxysepala HOM05D004440 ORTHO05D005183 9.5e-19 95.9 51 84.3
AL6G25580 Arabidopsis lyrata HOM05D004440 ORTHO05D005183 9.5e-19 95.9 51 86.3
Lsat_1_v5_gn_2_92220 Lactuca sativa HOM05D004440 ORTHO05D005183 9.5e-19 95.9 50 88.0
THA.LOC104822387 Tarenaya hassleriana HOM05D004440 ORTHO05D005183 9.5e-19 95.9 51 84.3
CiPaw.03G037800 Carya illinoinensis HOM05D004440 ORTHO05D005183 1.2e-18 95.5 51 86.3
Lalb_Chr02g0160291 Lupinus albus HOM05D004440 ORTHO05D005183 1.2e-18 95.5 51 86.3
Manes.15G181900 Manihot esculenta HOM05D004440 ORTHO05D005183 1.2e-18 95.5 51 84.3
Os06g0486900 Oryza sativa ssp. japonica HOM05D004440 ORTHO05D005183 1.2e-18 95.5 51 86.3
Hund04695 Selenicereus undatus HOM05D004440 ORTHO05D005183 1.2e-18 95.5 51 86.3
Potri.014G161300 Populus trichocarpa HOM05D004440 ORTHO05D005183 1.6e-18 95.1 49 87.8
Eucgr.J02207 Eucalyptus grandis HOM05D004440 ORTHO05D005183 2.1e-18 94.7 51 84.3
Thhalv10012160m.g Eutrema salsugineum HOM05D004440 ORTHO05D005183 2.1e-18 94.7 49 85.7
QL02p076678 Quercus lobata HOM05D004440 ORTHO05D005183 2.1e-18 94.7 50 84.0
RcHm_v2.0_Chr2g0171431 Rosa chinensis HOM05D004440 ORTHO05D005183 2.1e-18 94.7 51 84.3
Sp3g30980 Schrenkiella parvula HOM05D004440 ORTHO05D005183 2.1e-18 94.7 51 84.3
ATR0730G233 Amborella trichopoda HOM05D004440 ORTHO05D005183 2.8e-18 94.4 49 85.7
FvH4_6g50630 Fragaria vesca HOM05D004440 ORTHO05D005183 2.8e-18 94.4 51 84.3
FAN05G4697 Fragaria x ananassa HOM05D004440 ORTHO05D005183 2.8e-18 94.4 51 84.3
Medtr6g007175 Medicago truncatula HOM05D004440 ORTHO05D005183 2.8e-18 94.4 51 84.3
Rhsim08G0055000 Rhododendron simsii HOM05D004440 ORTHO05D005183 2.8e-18 94.4 51 84.3
HPP92_019950 Vanilla planifolia HOM05D004440 ORTHO05D005183 2.8e-18 94.4 51 84.3
Phvul.004G014732 Phaseolus vulgaris HOM05D004440 ORTHO05D005183 3.6e-18 94.0 51 84.3
Sc15g0002660 Simmondsia chinensis HOM05D004440 ORTHO05D005183 3.6e-18 94.0 51 84.3
FAN09G2584 Fragaria x ananassa HOM05D004440 ORTHO05D005183 4.7e-18 93.6 49 85.7
FAN14G3873 Fragaria x ananassa HOM05D004440 ORTHO05D005183 4.7e-18 93.6 49 85.7
PSO170G5364 Papaver somniferum HOM05D004440 ORTHO05D005183 4.7e-18 93.6 49 85.7
AT5G14780 Arabidopsis thaliana HOM05D004440 ORTHO05D005183 6.2e-18 93.2 51 82.4
ECA238G2781 Erigeron canadensis HOM05D004440 ORTHO05D005183 6.2e-18 93.2 51 86.3
Eucgr.J02208 Eucalyptus grandis HOM05D004440 ORTHO05D005183 6.2e-18 93.2 51 84.3
Eucgr.J02209 Eucalyptus grandis HOM05D004440 ORTHO05D005183 6.2e-18 93.2 51 84.3
Hma1.2p1_0993F.1_g245540 Hydrangea macrophylla HOM05D004440 ORTHO05D005183 6.2e-18 93.2 51 82.4
Hma1.2p1_2562F.1_g324430 Hydrangea macrophylla HOM05D004440 ORTHO05D005183 6.2e-18 93.2 51 82.4
unitig_62.g23157 Utricularia gibba HOM05D004440 ORTHO05D005183 6.2e-18 93.2 51 84.3
Phvul.004G014600 Phaseolus vulgaris HOM05D004440 ORTHO05D005183 8.1e-18 92.8 51 84.3
Aa31LG11G14670 Aethionema arabicum HOM05D004440 ORTHO05D005183 1.1e-17 92.4 51 80.4
Cfa007429 Carpinus fangiana HOM05D004440 ORTHO05D005183 1.1e-17 92.4 51 82.4
Haze_14668 Corylus avellana HOM05D004440 ORTHO05D005183 1.1e-17 92.4 51 82.4
TAR622G1110 Trochodendron aralioides HOM05D004440 ORTHO05D005183 1.1e-17 92.4 51 84.3
vmacro18243 Vaccinium macrocarpon HOM05D004440 ORTHO05D005183 1.1e-17 92.4 51 82.4
Zm00001eb222940 Zea mays HOM05D004440 ORTHO05D005183 1.1e-17 92.4 51 82.4
TWI56G1191 Tripterygium wilfordii HOM05D004440 ORTHO05D005183 1.8e-17 91.7 51 80.4
A02p02730 Brassica napus HOM05D004440 ORTHO05D005183 2.4e-17 91.3 49 81.6
BraA02t05244Z Brassica rapa HOM05D004440 ORTHO05D005183 2.4e-17 91.3 49 81.6
Nn3g16884 Nelumbo nucifera HOM05D004440 ORTHO05D005183 3.1e-17 90.9 49 85.7
BcaC03g13445 Brassica carinata HOM05D004440 ORTHO05D005183 3.4e-16 87.4 49 79.6
C02p07330 Brassica napus HOM05D004440 ORTHO05D005183 3.4e-16 87.4 49 79.6
BolC2t06663H Brassica oleracea HOM05D004440 ORTHO05D005183 3.4e-16 87.4 49 79.6
Zm00001eb358390 Zea mays HOM05D004440 ORTHO05D005183 4.4e-16 87.0 46 84.8
vmacro05820 Vaccinium macrocarpon HOM05D004440 ORTHO05D005183 7.6e-16 86.3 43 90.7
BolC2t06665H Brassica oleracea HOM05D004440 ORTHO05D005183 1.7e-15 85.1 49 77.6
Zm00001eb109380 Zea mays HOM05D004440 ORTHO05D005183 2.2e-15 84.7 43 88.4
Pp3c16_11630 Physcomitrium patens HOM05D004440 ORTHO05D005183 7.1e-14 79.7 49 71.4
BcaNung03094 Brassica carinata HOM05D004440 ORTHO05D005183 1.2e-13 79.0 51 74.5
SMO116G0169 Selaginella moellendorffii HOM05D004440 ORTHO05D005183 3.0e-12 74.3 49 63.3
arahy.Tifrunner.gnm1.ann1.F0HZWU Arachis hypogaea HOM05D004440 ORTHO05D005183 1.5e-11 72.0 38 84.2
Mapoly0004s0175 Marchantia polymorpha HOM05D004440 ORTHO05D005183 2.1e-10 68.2 51 58.8
Carub.0001s3408 Capsella rubella HOM05D004440 ORTHO05D005183 4.8e-10 67.0 35 85.7
Carub.0030s0001 Capsella rubella HOM05D004440 ORTHO05D005183 1.1e-09 65.9 50 66.0
HPP92_019961 Vanilla planifolia HOM05D004440 ORTHO05D005183 1.2e-08 62.4 33 81.8
Lsat_1_v5_gn_3_78501 Lactuca sativa HOM05D004440 ORTHO05D005183 2.2e-07 58.2 33 81.8
arahy.Tifrunner.gnm1.ann1.XDSK4Z Arachis hypogaea HOM05D004440 ORTHO05D005183 3.8e-07 57.4 31 74.2
Carub.0018s0004 Capsella rubella HOM05D004440 ORTHO05D005183 1.4e-06 55.5 50 58.0
AagrBONN_evm.TU.Sc2ySwM_228.5137__5138 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.9e-06 55.1 45 53.3
Cfa023380 Carpinus fangiana HOM05D004440 ORTHO05D005183 3.2e-06 54.3 49 49.0


User provided reference genes

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