Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G02763 Aquilegia oxysepala HOM05D004768 ORTHO05D005812 1.3e-148 529.6 247 100.0
CARHR241000 Cardamine hirsuta HOM05D004768 ORTHO05D005812 1.7e-49 200.3 213 51.6
Aqoxy2G01203 Aquilegia oxysepala HOM05D004768 ORTHO05D005812 4.3e-48 195.7 374 40.1
Cpa.g.sc5.22 Carica papaya HOM05D004768 ORTHO05D005812 1.8e-46 190.3 354 40.1
CDE02G3328 Ceratophyllum demersum HOM05D004768 ORTHO05D005812 6.8e-46 188.3 322 41.0
FAN05G5395 Fragaria x ananassa HOM05D004768 ORTHO05D005812 5.8e-45 185.3 358 38.5
Ciclev10012077m.g Citrus clementina HOM05D004768 ORTHO05D005812 1.7e-44 183.7 357 37.0
FAN09G1393 Fragaria x ananassa HOM05D004768 ORTHO05D005812 2.2e-44 183.3 354 38.7
FAN05G3800 Fragaria x ananassa HOM05D004768 ORTHO05D005812 3.8e-44 182.6 358 38.3
Atru.chr8.1546 Acer truncatum HOM05D004768 ORTHO05D005812 1.1e-43 181.0 350 37.4
CDE08G0455 Ceratophyllum demersum HOM05D004768 ORTHO05D005812 4.2e-43 179.1 305 40.7
Sabra16G0131600 Salix brachista HOM05D004768 ORTHO05D000138 5.4e-43 178.7 378 36.5
Zm00001eb304430 Zea mays HOM05D004768 ORTHO05D005812 7.1e-43 178.3 262 40.8
Nitab4.5_0003550g0050 Nicotiana tabacum HOM05D004768 ORTHO05D005812 2.1e-42 176.8 324 38.9
CANSAT78G2462 Cannabis sativa HOM05D004768 ORTHO05D005812 2.3e-41 173.3 348 37.4
EL10Ac4g08444 Beta vulgaris HOM05D004768 ORTHO05D005812 3.0e-41 172.9 190 51.1
PSO229G0127 Papaver somniferum HOM05D004768 ORTHO05D005812 5.1e-41 172.2 360 37.8
FAN14G4330 Fragaria x ananassa HOM05D004768 ORTHO05D005812 5.6e-40 168.7 353 36.5
A09p55390 Brassica napus HOM05D004768 ORTHO05D005812 6.2e-39 165.2 358 35.2
BraA09t40941Z Brassica rapa HOM05D004768 ORTHO05D005812 6.2e-39 165.2 358 35.2
BolC8t47355H Brassica oleracea HOM05D004768 ORTHO05D005812 9.0e-38 161.4 314 38.5
Lsat_1_v5_gn_5_164801 Lactuca sativa HOM05D004768 ORTHO05D005812 9.0e-38 161.4 350 34.9
C08p38320 Brassica napus HOM05D004768 ORTHO05D005812 1.2e-37 161.0 356 34.6
HPP92_013808 Vanilla planifolia HOM05D004768 ORTHO05D005812 1.5e-37 160.6 131 61.8
Duzib128G0567 Durio zibethinus HOM05D004768 ORTHO05D005812 2.6e-37 159.8 324 37.0
BolC8t51408H Brassica oleracea HOM05D004768 ORTHO05D005812 5.8e-37 158.7 356 34.3
RcHm_v2.0_Chr3g0473611 Rosa chinensis HOM05D004768 ORTHO05D005812 5.8e-37 158.7 361 34.3
FvH4_6g18650 Fragaria vesca HOM05D004768 ORTHO05D005812 7.6e-37 158.3 359 33.4
COL.COLO4_29739 Corchorus olitorius HOM05D004768 ORTHO05D005812 1.3e-36 157.5 367 33.8
Oeu047201.1 Olea europaea HOM05D004768 ORTHO05D005812 1.3e-36 157.5 106 74.5
A08p05150 Brassica napus HOM05D004768 ORTHO05D005812 2.2e-36 156.8 335 36.1
Os07g0252000 Oryza sativa ssp. japonica HOM05D004768 ORTHO05D005812 2.2e-36 156.8 145 55.9
HanXRQChr01g0001951 Helianthus annuus HOM05D004768 ORTHO05D005812 3.8e-36 156.0 350 33.7
Sopen09g029240 Solanum pennellii HOM05D004768 ORTHO05D005812 3.8e-36 156.0 102 75.5
Solyc09g074400.3 Solanum lycopersicum HOM05D004768 ORTHO05D005812 4.9e-36 155.6 102 75.5
MSTRG.10364 Avicennia marina HOM05D004768 ORTHO05D005812 1.4e-35 154.1 106 74.5
Gohir.D01G195900 Gossypium hirsutum HOM05D004768 ORTHO05D005812 1.4e-35 154.1 370 33.8
Sc02g0000880 Simmondsia chinensis HOM05D004768 ORTHO05D005812 1.9e-35 153.7 363 30.6
CSS0047457 Camellia sinensis var. sinensis HOM05D004768 ORTHO05D005812 2.4e-35 153.3 107 72.0
Gohir.A01G206500 Gossypium hirsutum HOM05D004768 ORTHO05D005812 2.4e-35 153.3 370 33.8
CiPaw.10G009400 Carya illinoinensis HOM05D004768 ORTHO05D005812 3.2e-35 152.9 108 72.2
Aa31sc210G50 Aethionema arabicum HOM05D004768 ORTHO05D005812 4.2e-35 152.5 364 33.8
DCAR_009162 Daucus carota HOM05D004768 ORTHO05D005812 7.1e-35 151.8 129 58.1
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 7.1e-35 151.8 104 72.1
GSVIVG01033839001 Vitis vinifera HOM05D004768 ORTHO05D005812 7.1e-35 151.8 102 74.5
Gorai.002G240100 Gossypium raimondii HOM05D004768 ORTHO05D005812 9.3e-35 151.4 370 33.5
Prupe.7G110600 Prunus persica HOM05D004768 ORTHO05D005812 1.6e-34 150.6 108 69.4
SEGI_40271 Sequoiadendron giganteum HOM05D004768 ORTHO05D005812 1.6e-34 150.6 129 59.7
DCAR_020747 Daucus carota HOM05D004768 ORTHO05D005812 2.1e-34 150.2 129 62.0
TWI74G0982 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 2.1e-34 150.2 103 73.8
Cc06_g05720 Coffea canephora HOM05D004768 ORTHO05D005812 3.5e-34 149.4 104 74.0
Glyma.03G195400 Glycine max HOM05D004768 ORTHO05D005812 3.5e-34 149.4 347 35.2
Hma1.2p1_0084F.1_g043770 Hydrangea macrophylla HOM05D004768 ORTHO05D005812 3.5e-34 149.4 104 73.1
Lj2A136G54 Lonicera japonica HOM05D004768 ORTHO05D005812 3.5e-34 149.4 105 69.5
Thecc.05G088700 Theobroma cacao HOM05D004768 ORTHO05D005812 3.5e-34 149.4 107 70.1
AUR62017616 Chenopodium quinoa HOM05D004768 ORTHO05D005812 7.9e-34 148.3 107 70.1
QL07p038809 Quercus lobata HOM05D004768 ORTHO05D005812 7.9e-34 148.3 104 72.1
QL07p039071 Quercus lobata HOM05D004768 ORTHO05D005812 7.9e-34 148.3 104 72.1
CiPaw.09G013600 Carya illinoinensis HOM05D004768 ORTHO05D005812 1.7e-33 147.1 108 70.4
Migut.L01777 Erythranthe guttata HOM05D004768 ORTHO05D005812 1.7e-33 147.1 367 32.2
FAN02G2744 Fragaria x ananassa HOM05D004768 ORTHO05D005812 1.7e-33 147.1 349 34.4
MD12G1035900 Malus domestica HOM05D004768 ORTHO05D005812 1.7e-33 147.1 104 70.2
arahy.Tifrunner.gnm1.ann1.UHNL6N Arachis hypogaea HOM05D004768 ORTHO05D005812 3.0e-33 146.4 111 67.6
TWI77G0792 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 3.0e-33 146.4 102 72.5
PSO384G2514 Papaver somniferum HOM05D004768 ORTHO05D005812 3.9e-33 146.0 101 75.2
SGA_v2.0_scaffold184G39961 Striga asiatica HOM05D004768 ORTHO05D005812 3.9e-33 146.0 103 70.9
Manes.09G055600 Manihot esculenta HOM05D004768 ORTHO05D005812 5.1e-33 145.6 103 71.8
VMungo1383G3473 Vigna mungo HOM05D004768 ORTHO05D005812 5.1e-33 145.6 109 68.8
PSO339G5247 Papaver somniferum HOM05D004768 ORTHO05D005812 6.6e-33 145.2 352 34.7
EL10Ac4g08441 Beta vulgaris HOM05D004768 ORTHO05D005812 8.7e-33 144.8 104 70.2
Eucgr.K02044 Eucalyptus grandis HOM05D004768 ORTHO05D005812 8.7e-33 144.8 101 71.3
Potri.001G221000 Populus trichocarpa HOM05D004768 ORTHO05D005812 8.7e-33 144.8 349 33.8
Potri.002G212800 Populus trichocarpa HOM05D004768 ORTHO05D005812 1.1e-32 144.4 102 70.6
PGR142G0725 Punica granatum HOM05D004768 ORTHO05D005812 1.1e-32 144.4 105 69.5
Medtr7g104550 Medicago truncatula HOM05D004768 ORTHO05D005812 1.9e-32 143.7 104 69.2
Phvul.001G190000 Phaseolus vulgaris HOM05D004768 ORTHO05D005812 2.5e-32 143.3 109 68.8
Actinidia05433 Actinidia chinensis HOM05D004768 ORTHO05D005812 3.3e-32 142.9 113 66.4
arahy.Tifrunner.gnm1.ann1.F6QZS0 Arachis hypogaea HOM05D004768 ORTHO05D005812 3.3e-32 142.9 108 68.5
MD14G1022600 Malus domestica HOM05D004768 ORTHO05D005812 3.3e-32 142.9 101 70.3
THA.LOC104816391 Tarenaya hassleriana HOM05D004768 ORTHO05D005812 3.3e-32 142.9 361 32.4
Carub.0007s0749 Capsella rubella HOM05D004768 ORTHO05D005812 5.6e-32 142.1 111 64.0
Peaxi162Scf00290g00062 Petunia axillaris HOM05D004768 ORTHO05D005812 5.6e-32 142.1 97 70.1
Lj1g0007409 Lotus japonicus HOM05D004768 ORTHO05D005812 1.3e-31 141.0 110 67.3
SalBow7G2666 Salvia bowleyana HOM05D004768 ORTHO05D005812 1.3e-31 141.0 106 67.0
Sed0028141 Sechium edule HOM05D004768 ORTHO05D005812 1.6e-31 140.6 101 69.3
MSTRG.26639 Avicennia marina HOM05D004768 ORTHO05D005812 2.1e-31 140.2 106 65.1
Thhalv10002028m.g Eutrema salsugineum HOM05D004768 ORTHO05D005812 2.8e-31 139.8 359 31.8
Lsat_1_v5_gn_8_77061 Lactuca sativa HOM05D004768 ORTHO05D005812 4.8e-31 139.0 353 33.7
HanXRQChr05g0133111 Helianthus annuus HOM05D004768 ORTHO05D005812 6.2e-31 138.7 368 31.0
TPR.G19532 Trifolium pratense HOM05D004768 ORTHO05D005812 8.1e-31 138.3 324 33.6
TAR633G0463 Trochodendron aralioides HOM05D004768 ORTHO05D005812 8.1e-31 138.3 364 34.6
AL4G18210 Arabidopsis lyrata HOM05D004768 ORTHO05D005812 1.1e-30 137.9 108 63.9
AL7G18690 Arabidopsis lyrata HOM05D004768 ORTHO05D005812 1.1e-30 137.9 108 64.8
Ca_09003_v3 Cicer arietinum L. HOM05D004768 ORTHO05D005812 1.1e-30 137.9 109 64.2
BcaB08g35238 Brassica carinata HOM05D004768 ORTHO05D005812 1.8e-30 137.1 105 64.8
Sp4g05920 Schrenkiella parvula HOM05D004768 ORTHO05D005812 1.8e-30 137.1 107 64.5
Sed0006419 Sechium edule HOM05D004768 ORTHO05D005812 1.8e-30 137.1 101 69.3
ClCG10G018990 Citrullus lanatus HOM05D004768 ORTHO05D005812 2.4e-30 136.7 102 68.6
AT2G26060 Arabidopsis thaliana HOM05D004768 ORTHO05D005812 3.1e-30 136.3 108 63.9
MELO3C009471.2 Cucumis melo HOM05D004768 ORTHO05D005812 3.1e-30 136.3 311 35.7
Psat3g033480 Pisum sativum HOM05D004768 ORTHO05D005812 5.3e-30 135.6 102 66.7
Lalb_Chr20g0111731 Lupinus albus HOM05D004768 ORTHO05D005812 6.9e-30 135.2 107 64.5
Rhsim03G0075500 Rhododendron simsii HOM05D004768 ORTHO05D005812 9.0e-30 134.8 392 28.8
CsaV3_3G037260 Cucumis sativus L. HOM05D004768 ORTHO05D005812 2.0e-29 133.7 97 71.1
Carub.0004s0588 Capsella rubella HOM05D004768 ORTHO05D005812 3.4e-29 132.9 106 63.2
unitig_746.g26778 Utricularia gibba HOM05D004768 ORTHO05D005812 2.2e-28 130.2 106 60.4
BcaC07g40836 Brassica carinata HOM05D004768 ORTHO05D005812 2.9e-28 129.8 107 61.7
ATR0776G063 Amborella trichopoda HOM05D004768 ORTHO05D005812 9.3e-27 124.8 346 31.5
vmacro07406 Vaccinium macrocarpon HOM05D004768 ORTHO05D005812 6.0e-26 122.1 149 47.7
Mapoly0001s0287 Marchantia polymorpha HOM05D004768 ORTHO05D005812 2.3e-25 120.2 129 51.2
C08p05390 Brassica napus HOM05D004768 ORTHO05D005812 9.6e-24 114.8 260 35.8
Manes.08G025000 Manihot esculenta HOM05D004768 ORTHO05D005812 3.7e-23 112.8 78 71.8
Potri.001G221150 Populus trichocarpa HOM05D004768 ORTHO05D005812 6.2e-23 112.1 71 76.1
AagrBONN_evm.TU.Sc2ySwM_344.1733 Anthoceros agrestis HOM05D004768 ORTHO05D005812 3.1e-22 109.8 128 48.4
Haze_19607 Corylus avellana HOM05D004768 ORTHO05D005812 9.0e-22 108.2 107 55.1
CARHR262780 Cardamine hirsuta HOM05D004768 ORTHO05D005812 3.4e-21 106.3 99 58.6
BolC3t15591H Brassica oleracea HOM05D000416 ORTHO05D000322 4.5e-21 105.9 215 35.8
Pp3c21_14500 Physcomitrium patens HOM05D004768 ORTHO05D005812 2.2e-20 103.6 112 53.6
SMO239G0020 Selaginella moellendorffii HOM05D004768 ORTHO05D005812 3.8e-20 102.8 138 42.8
Sopen09g004150 Solanum pennellii HOM05D004768 ORTHO05D005812 4.9e-20 102.4 140 42.9
Nitab4.5_0001107g0160 Nicotiana tabacum HOM05D004768 ORTHO05D005812 7.1e-19 98.6 75 69.3
Solyc09g009410.3 Solanum lycopersicum HOM05D004768 ORTHO05D005812 7.1e-19 98.6 167 40.1
AagrBONN_evm.TU.Sc2ySwM_344.3396 Anthoceros agrestis HOM05D004768 ORTHO05D005812 6.0e-18 95.5 166 39.2
AT4G32990 Arabidopsis thaliana HOM05D004768 ORTHO05D005812 1.8e-17 94.0 287 27.9
Aa31LG5G9700 Aethionema arabicum HOM05D004768 ORTHO05D005812 6.7e-17 92.0 74 64.9
BcaC01g04899 Brassica carinata HOM05D004768 ORTHO05D005812 9.0e-14 81.6 172 34.3
Aa31LG7G14190 Aethionema arabicum HOM05D004768 ORTHO05D005812 1.5e-13 80.9 137 43.1
Sabra16G0123600 Salix brachista HOM05D000102 ORTHO05D005812 1.5e-13 80.9 135 40.7
CARHR114770 Cardamine hirsuta HOM05D004768 ORTHO05D005812 3.4e-13 79.7 72 61.1
SalBow1G7826 Salvia bowleyana HOM05D004768 ORTHO05D005812 3.4e-13 79.7 265 31.7
Nn2g14155 Nelumbo nucifera HOM05D004768 ORTHO05D005812 3.8e-12 76.3 44 88.6
SalBow1G3573 Salvia bowleyana HOM05D004768 ORTHO05D005812 2.5e-11 73.6 113 42.5
DCAR_020750 Daucus carota HOM05D004768 ORTHO05D005812 1.2e-10 71.2 182 30.8
C03p32520 Brassica napus HOM05D000416 ORTHO05D000322 1.0e-09 68.2 40 72.5
Glyma.19G194908 Glycine max HOM05D004768 ORTHO05D005812 1.1e-08 64.7 36 80.6
TWI53G2067 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 4.3e-08 62.8 243 27.6
Dinv21211 Davidia involucrata HOM05D004768 ORTHO05D005812 7.4e-08 62.0 104 35.6
Dinv31684 Davidia involucrata HOM05D004768 ORTHO05D005812 7.4e-08 62.0 278 24.5
Hund03983 Selenicereus undatus HOM05D004768 ORTHO05D005812 1.3e-07 61.2 106 34.9
DCAR_009163 Daucus carota HOM05D004768 ORTHO05D005812 2.2e-07 60.5 114 34.2
Cre08.g374400 Chlamydomonas reinhardtii HOM05D004768 ORTHO05D005812 3.7e-07 59.7 215 27.0
PGSC0003DMG400016841 Solanum tuberosum HOM05D004768 ORTHO05D005812 6.3e-07 58.9 103 33.0
TAR636G3610 Trochodendron aralioides HOM05D004768 ORTHO05D005812 6.3e-07 58.9 116 35.3
AL3G53280 Arabidopsis lyrata HOM05D006183 ORTHO05D007844 1.8e-06 57.4 241 25.7
AUR62008815 Chenopodium quinoa HOM05D006183 ORTHO05D007844 1.8e-06 57.4 241 24.1
Oeu056927.1 Olea europaea HOM05D004768 ORTHO05D005812 1.8e-06 57.4 104 31.7
Sp3g33570 Schrenkiella parvula HOM05D006183 ORTHO05D007844 4.1e-06 56.2 241 25.3
SHI23981 Sapria himalayana HOM05D000105 ORTHO05D000023 5.3e-06 55.8 134 29.9
BcaB03g16820 Brassica carinata HOM05D006183 ORTHO05D007844 6.9e-06 55.5 241 25.3
BcaC06g36716 Brassica carinata HOM05D006183 ORTHO05D007844 6.9e-06 55.5 241 25.3
A07p00380 Brassica napus HOM05D006183 ORTHO05D007844 6.9e-06 55.5 241 25.3
BolC7t40519H Brassica oleracea HOM05D006183 ORTHO05D007844 6.9e-06 55.5 241 25.3
BraA07t27830Z Brassica rapa HOM05D006183 ORTHO05D007844 6.9e-06 55.5 241 25.3
MCO12G400 Micromonas commoda HOM05D004768 ORTHO05D005812 6.9e-06 55.5 127 34.6
Thhalv10001927m.g Eutrema salsugineum HOM05D006183 ORTHO05D007844 9.0e-06 55.1 241 24.9
Sc17g0002990 Simmondsia chinensis HOM05D006183 ORTHO05D007844 9.0e-06 55.1 241 23.7


User provided reference genes

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