Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G02718 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.9e-104 382.5 190 100.0
TAR627G0054 Trochodendron aralioides HOM05D003663 ORTHO05D005327 5.8e-45 184.9 173 52.6
arahy.Tifrunner.gnm1.ann1.8QBK2E Arachis hypogaea HOM05D003663 ORTHO05D005327 1.9e-43 179.9 189 47.6
arahy.Tifrunner.gnm1.ann1.P7DY53 Arachis hypogaea HOM05D003663 ORTHO05D005327 1.9e-43 179.9 189 47.6
TPR.G1287 Trifolium pratense HOM05D003663 ORTHO05D005327 3.5e-42 175.6 186 47.3
Hma1.2p1_2614F.1_g325410 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 4.6e-42 175.3 172 48.3
Hma1.2p1_1267F.1_g271530 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 6.0e-42 174.9 158 50.6
Ca_06459_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 8.7e-41 171.0 183 47.0
Psat2g004440 Pisum sativum HOM05D003663 ORTHO05D005327 1.1e-40 170.6 184 46.7
LjContig00081g0009748 Lotus japonicus HOM05D003663 ORTHO05D005327 2.5e-40 169.5 168 50.0
Glyma.14G007200 Glycine max HOM05D003663 ORTHO05D005327 2.8e-39 166.0 171 49.1
Phvul.008G285700 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 8.1e-39 164.5 167 48.5
MD09G1122000 Malus domestica HOM05D003663 ORTHO05D005327 2.4e-38 162.9 156 51.9
Medtr5g097370 Medicago truncatula HOM05D003663 ORTHO05D005327 3.1e-38 162.5 184 44.6
Lalb_Chr17g0349111 Lupinus albus HOM05D003663 ORTHO05D005327 9.0e-38 161.0 163 49.7
VMungo0647G1338 Vigna mungo HOM05D003663 ORTHO05D005327 1.5e-37 160.2 144 54.2
ClCG02G002710 Citrullus lanatus HOM05D003663 ORTHO05D005327 1.7e-36 156.8 162 46.3
Sed0003500 Sechium edule HOM05D003663 ORTHO05D005327 1.4e-35 153.7 150 48.7
CsaV3_7G023690 Cucumis sativus L. HOM05D003663 ORTHO05D005327 1.9e-35 153.3 153 45.8
Prupe.4G006800 Prunus persica HOM05D003663 ORTHO05D005327 3.2e-35 152.5 140 52.1
MELO3C024107.2 Cucumis melo HOM05D003663 ORTHO05D005327 1.2e-34 150.6 155 45.2
TPR.G10569 Trifolium pratense HOM05D003663 ORTHO05D005327 2.1e-34 149.8 155 49.7
TWI36G0551 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 3.5e-34 149.1 156 45.5
arahy.Tifrunner.gnm1.ann1.CR9YGF Arachis hypogaea HOM05D003663 ORTHO05D005327 4.6e-34 148.7 143 51.7
arahy.Tifrunner.gnm1.ann1.5NF29Y Arachis hypogaea HOM05D003663 ORTHO05D005327 1.0e-33 147.5 159 48.4
MELO3C028604.2 Cucumis melo HOM05D003663 ORTHO05D005327 3.0e-33 146.0 161 44.7
Nn1g03229 Nelumbo nucifera HOM05D003663 ORTHO05D005327 6.7e-33 144.8 158 46.2
Lj6g0026147 Lotus japonicus HOM05D003663 ORTHO05D005327 1.5e-32 143.7 161 44.7
Ca_00744_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 5.7e-32 141.7 155 45.8
PGR142G2458 Punica granatum HOM05D003663 ORTHO05D005327 5.7e-32 141.7 146 48.6
VMungo0540G0424 Vigna mungo HOM05D003663 ORTHO05D005327 7.4e-32 141.4 152 48.0
Glyma.09G012100 Glycine max HOM05D003663 ORTHO05D005327 9.6e-32 141.0 164 47.6
Lalb_Chr20g0119391 Lupinus albus HOM05D003663 ORTHO05D005327 3.7e-31 139.0 156 44.9
AT5G26730 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 1.1e-30 137.5 151 43.0
Phvul.006G141400 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 1.4e-30 137.1 156 48.1
Aqoxy1G04227 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 3.1e-30 136.0 160 44.4
Psat1g178200 Pisum sativum HOM05D003663 ORTHO05D005327 3.1e-30 136.0 160 45.6
PSO210G1796 Papaver somniferum HOM05D003663 ORTHO05D005327 4.1e-30 135.6 170 42.4
PSO302G0013 Papaver somniferum HOM05D003663 ORTHO05D005327 5.3e-30 135.2 170 42.4
FvH4_3g00560 Fragaria vesca HOM05D003663 ORTHO05D005327 6.9e-30 134.8 139 46.0
Sed0016160 Sechium edule HOM05D003663 ORTHO05D005327 9.0e-30 134.4 127 48.8
FAN25G1738 Fragaria x ananassa HOM05D003663 ORTHO05D005327 1.2e-29 134.0 139 45.3
ATR0624G116 Amborella trichopoda HOM05D003663 ORTHO05D005327 1.5e-29 133.7 156 44.2
AL6G38450 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 1.5e-29 133.7 176 40.9
A09p05770 Brassica napus HOM05D003663 ORTHO05D005327 2.0e-29 133.3 169 40.8
BraA09t36218Z Brassica rapa HOM05D003663 ORTHO05D005327 2.0e-29 133.3 169 40.8
DCAR_010543 Daucus carota HOM05D003663 ORTHO05D005327 7.6e-29 131.3 185 38.9
Oeu027885.1 Olea europaea HOM05D003663 ORTHO05D005327 7.6e-29 131.3 154 39.6
Aqoxy1G04229 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.3e-28 130.6 157 42.0
ECA233G1163 Erigeron canadensis HOM05D003663 ORTHO05D005327 2.2e-28 129.8 150 44.7
Sp6g27190 Schrenkiella parvula HOM05D003663 ORTHO05D005327 2.9e-28 129.4 194 38.7
TWI34G0428 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 2.9e-28 129.4 191 38.7
BcaC04g23626 Brassica carinata HOM05D003663 ORTHO05D005327 5.0e-28 128.6 173 39.9
C09p06370 Brassica napus HOM05D003663 ORTHO05D005327 1.4e-27 127.1 173 39.3
BolC9t53556H Brassica oleracea HOM05D003663 ORTHO05D005327 1.9e-27 126.7 172 39.0
Ciclev10017620m.g Citrus clementina HOM05D003663 ORTHO05D005327 1.9e-27 126.7 157 42.7
CARHR186960 Cardamine hirsuta HOM05D003663 ORTHO05D005327 3.2e-27 125.9 139 43.2
COL.COLO4_06064 Corchorus olitorius HOM05D003663 ORTHO05D005327 3.2e-27 125.9 154 42.9
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 4.2e-27 125.6 164 39.0
Carub.0006s2423 Capsella rubella HOM05D003663 ORTHO05D005327 4.2e-27 125.6 139 44.6
Cfa016035 Carpinus fangiana HOM05D003663 ORTHO05D005327 4.2e-27 125.6 174 40.2
Manes.09G126900 Manihot esculenta HOM05D003663 ORTHO05D005327 7.2e-27 124.8 190 36.8
THA.LOC104826655 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 7.2e-27 124.8 157 39.5
Aqoxy1G04228 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.2e-26 124.0 129 46.5
Haze_00422 Corylus avellana HOM05D003663 ORTHO05D005327 1.2e-26 124.0 178 39.9
BolC2t06783H Brassica oleracea HOM05D003663 ORTHO05D005327 1.6e-26 123.6 156 41.7
Lalb_Chr05g0220821 Lupinus albus HOM05D003663 ORTHO05D005327 1.6e-26 123.6 192 37.5
AL6G27920 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 2.7e-26 122.9 134 45.5
Peaxi162Scf00815g00311 Petunia axillaris HOM05D003663 ORTHO05D005327 2.7e-26 122.9 170 38.8
CAN.G65.131 Capsicum annuum HOM05D003663 ORTHO05D005327 3.5e-26 122.5 192 38.0
AT5G16920 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 4.6e-26 122.1 134 44.0
Hma1.2p1_1680F.1_g297170 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 4.6e-26 122.1 177 36.7
Lj4g0026545 Lotus japonicus HOM05D003663 ORTHO05D005327 4.6e-26 122.1 190 37.9
THA.LOC104827213 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 4.6e-26 122.1 140 43.6
BcaC03g18525 Brassica carinata HOM05D003663 ORTHO05D005327 7.9e-26 121.3 155 41.9
C02p08670 Brassica napus HOM05D003663 ORTHO05D005327 7.9e-26 121.3 155 41.9
A02p03870 Brassica napus HOM05D003663 ORTHO05D005327 1.0e-25 120.9 155 41.3
CARHR196240 Cardamine hirsuta HOM05D003663 ORTHO05D005327 1.0e-25 120.9 138 43.5
Sopen06g029160 Solanum pennellii HOM05D003663 ORTHO05D005327 1.0e-25 120.9 163 36.8
BcaNung00434 Brassica carinata HOM05D003663 ORTHO05D005327 2.3e-25 119.8 165 41.2
Oeu060390.1 Olea europaea HOM05D002083 ORTHO05D000332 2.3e-25 119.8 152 38.2
Thhalv10005288m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 3.0e-25 119.4 135 40.0
Nitab4.5_0000021g0580 Nicotiana tabacum HOM05D003663 ORTHO05D005327 3.0e-25 119.4 136 41.2
TWI38G0283 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 3.0e-25 119.4 140 41.4
VMungo0251G1526 Vigna mungo HOM05D003663 ORTHO05D005327 3.0e-25 119.4 188 38.3
Nitab4.5_0001762g0070 Nicotiana tabacum HOM05D003663 ORTHO05D005327 3.9e-25 119.0 184 34.8
Eucgr.L03441 Eucalyptus grandis HOM05D003663 ORTHO05D005327 5.1e-25 118.6 117 47.9
Carub.0006s1513 Capsella rubella HOM05D003663 ORTHO05D005327 6.7e-25 118.2 168 39.3
Rhsim09G0213000 Rhododendron simsii HOM05D003663 ORTHO05D005327 6.7e-25 118.2 179 35.8
BraA02t05351Z Brassica rapa HOM05D003663 ORTHO05D005327 8.7e-25 117.9 189 37.6
Phvul.003G226500 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 1.1e-24 117.5 156 40.4
PGSC0003DMG400027034 Solanum tuberosum HOM05D003663 ORTHO05D005327 1.1e-24 117.5 172 36.0
CSS0037566 Camellia sinensis var. sinensis HOM05D003663 ORTHO05D005327 1.9e-24 116.7 160 36.2
Thhalv10014405m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 2.5e-24 116.3 158 39.2
HanXRQChr14g0462981 Helianthus annuus HOM05D003663 ORTHO05D005327 2.5e-24 116.3 166 34.9
Psat4g076520 Pisum sativum HOM05D003663 ORTHO05D005327 3.3e-24 115.9 190 37.4
Duzib106G1874 Durio zibethinus HOM05D003663 ORTHO05D005327 4.3e-24 115.5 186 34.9
TPR.G17125 Trifolium pratense HOM05D003663 ORTHO05D005327 4.3e-24 115.5 187 38.0
Glyma.17G149700 Glycine max HOM05D003663 ORTHO05D005327 5.7e-24 115.2 180 38.9
CiPaw.06G032900 Carya illinoinensis HOM05D003663 ORTHO05D005327 7.4e-24 114.8 143 39.9
Duzib177G0557 Durio zibethinus HOM05D003663 ORTHO05D005327 9.7e-24 114.4 154 39.6
Medtr4g099150 Medicago truncatula HOM05D003663 ORTHO05D005327 9.7e-24 114.4 156 38.5
Prupe.3G201600 Prunus persica HOM05D003663 ORTHO05D005327 9.7e-24 114.4 137 46.0
Lsat_1_v5_gn_2_136720 Lactuca sativa HOM05D003663 ORTHO05D005327 1.3e-23 114.0 180 34.4
Migut.F00942 Erythranthe guttata HOM05D003663 ORTHO05D005327 2.2e-23 113.2 187 35.3
Potri.019G049600 Populus trichocarpa HOM05D003663 ORTHO05D005327 2.8e-23 112.8 172 34.9
Cc00_g28240 Coffea canephora HOM05D003663 ORTHO05D005327 3.7e-23 112.5 169 37.3
Nn3g19378 Nelumbo nucifera HOM05D003663 ORTHO05D005327 3.7e-23 112.5 173 35.3
Gohir.D11G318900 Gossypium hirsutum HOM05D003663 ORTHO05D005327 4.8e-23 112.1 142 38.7
Gorai.007G348900 Gossypium raimondii HOM05D003663 ORTHO05D005327 4.8e-23 112.1 142 38.7
A06p36830 Brassica napus HOM05D003663 ORTHO05D005327 6.3e-23 111.7 177 37.9
BraA06t26609Z Brassica rapa HOM05D003663 ORTHO05D005327 6.3e-23 111.7 177 37.9
SGA_v2.0_scaffold50G18444 Striga asiatica HOM05D003663 ORTHO05D005327 6.3e-23 111.7 147 38.8
CANSAT21G0248 Cannabis sativa HOM05D003663 ORTHO05D005327 8.2e-23 111.3 149 38.9
Cpa.g.sc504.5 Carica papaya HOM05D003663 ORTHO05D005327 8.2e-23 111.3 167 34.7
Gohir.A11G303600 Gossypium hirsutum HOM05D003663 ORTHO05D005327 8.2e-23 111.3 148 38.5
EL10Ac3g05074 Beta vulgaris HOM05D003663 ORTHO05D005327 1.1e-22 110.9 160 37.5
QL09p023778 Quercus lobata HOM05D003663 ORTHO05D005327 1.1e-22 110.9 130 41.5
Ciclev10021912m.g Citrus clementina HOM05D003663 ORTHO05D005327 1.4e-22 110.5 152 32.9
CsaV3_7G002660 Cucumis sativus L. HOM05D003663 ORTHO05D005327 1.4e-22 110.5 115 46.1
Aqoxy3G02161 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.8e-22 110.2 150 37.3
BcaNung02825 Brassica carinata HOM05D003663 ORTHO05D005327 1.8e-22 110.2 164 40.2
C07p41660 Brassica napus HOM05D003663 ORTHO05D005327 2.4e-22 109.8 177 37.3
BolC7t44701H Brassica oleracea HOM05D003663 ORTHO05D005327 2.4e-22 109.8 177 37.3
RcHm_v2.0_Chr2g0156681 Rosa chinensis HOM05D003663 ORTHO05D005327 2.4e-22 109.8 114 49.1
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 5.3e-22 108.6 174 36.8
ClCG01G010650 Citrullus lanatus HOM05D003663 ORTHO05D005327 5.3e-22 108.6 128 43.8
Sed0002316 Sechium edule HOM05D003663 ORTHO05D005327 5.3e-22 108.6 128 43.8
Sc13g0010870 Simmondsia chinensis HOM05D003663 ORTHO05D005327 9.0e-22 107.8 149 38.3
TAR374G1477 Trochodendron aralioides HOM05D003663 ORTHO05D005327 1.5e-21 107.1 172 36.6
ATR0829G139 Amborella trichopoda HOM05D003663 ORTHO05D005327 2.0e-21 106.7 186 34.9
Potri.006G016700 Populus trichocarpa HOM05D003663 ORTHO05D005327 4.5e-21 105.5 107 44.9
PGR142G2930 Punica granatum HOM05D003663 ORTHO05D005327 7.7e-21 104.8 161 32.9
vmacro22176 Vaccinium macrocarpon HOM05D003663 ORTHO05D005327 7.7e-21 104.8 152 35.5
Glyma.02G305800 Glycine max HOM05D003663 ORTHO05D005327 1.0e-20 104.4 109 48.6
Lj3P887T57 Lonicera japonica HOM05D003663 ORTHO05D005327 1.0e-20 104.4 158 38.0
Prupe.2G326500 Prunus persica HOM05D003663 ORTHO05D005327 1.0e-20 104.4 151 39.1
Rhsim03G0221600 Rhododendron simsii HOM05D003663 ORTHO05D005327 1.0e-20 104.4 135 35.6
Eucgr.K00086 Eucalyptus grandis HOM05D003663 ORTHO05D005327 1.3e-20 104.0 142 36.6
Sed0020467 Sechium edule HOM05D003663 ORTHO05D005327 1.3e-20 104.0 128 41.4
Sabra19G0059300 Salix brachista HOM05D003663 ORTHO05D005327 3.8e-20 102.4 171 34.5
AUR62002065 Chenopodium quinoa HOM05D003663 ORTHO05D005327 6.5e-20 101.7 181 35.4
MBI04_g20973_MAGBIO Magnolia biondii HOM05D003663 ORTHO05D005327 6.5e-20 101.7 131 36.6
Ah.13g072750 Amaranthus hybridus HOM05D003663 ORTHO05D005327 8.5e-20 101.3 181 34.3
Duzib128G0448 Durio zibethinus HOM05D003663 ORTHO05D005327 8.5e-20 101.3 193 32.1
PSO063G6858 Papaver somniferum HOM05D003663 ORTHO05D005327 4.2e-19 99.0 178 32.6
PSO782G5365 Papaver somniferum HOM05D003663 ORTHO05D005327 4.2e-19 99.0 180 32.8
SalBow2G0094 Salvia bowleyana HOM05D003663 ORTHO05D005327 3.6e-18 95.9 174 36.2
Medtr2g026520 Medicago truncatula HOM05D003663 ORTHO05D005327 6.1e-18 95.1 123 41.5
Actinidia33794 Actinidia chinensis HOM05D003663 ORTHO05D005327 1.0e-17 94.4 155 37.4
Sp2g21370 Schrenkiella parvula HOM05D003663 ORTHO05D005327 1.5e-16 90.5 115 38.3
Lalb_Chr16g0386341 Lupinus albus HOM05D003663 ORTHO05D005327 1.7e-15 87.0 87 44.8
BcaB04g19726 Brassica carinata HOM05D003663 ORTHO05D005327 4.1e-14 82.4 164 28.7
BcaB07g29963 Brassica carinata HOM05D003663 ORTHO05D005327 1.5e-13 80.5 91 39.6
A02p39370 Brassica napus HOM05D003663 ORTHO05D010021 3.8e-12 75.9 81 40.7
Nn1g01862 Nelumbo nucifera HOM05D003663 ORTHO05D005327 2.5e-11 73.2 123 31.7
Potri.016G009000 Populus trichocarpa HOM05D003663 ORTHO05D005327 1.2e-10 70.9 57 47.4
FAN02G2952 Fragaria x ananassa HOM05D000062 ORTHO05D000043 1.6e-10 70.5 69 50.7
Thecc.05G213800 Theobroma cacao HOM05D003663 ORTHO05D005327 2.1e-10 70.1 154 31.8
FAN05G2299 Fragaria x ananassa HOM05D003663 ORTHO05D005327 1.8e-09 67.0 68 48.5
Actinidia34308 Actinidia chinensis HOM05D003663 ORTHO05D005327 4.4e-08 62.4 80 37.5
Actinidia33832 Actinidia chinensis HOM05D005305 ORTHO05D006394 1.7e-07 60.5 171 28.1
Mapoly0095s0061 Marchantia polymorpha HOM05D005423 ORTHO05D006223 2.8e-07 59.7 148 29.1
Glyma.15G116750 Glycine max HOM05D003663 ORTHO05D005327 1.1e-06 57.8 47 55.3
CiPaw.09G149100 Carya illinoinensis HOM05D005423 ORTHO05D006223 1.4e-06 57.4 109 30.3
Ca_02385_v3 Cicer arietinum L. HOM05D005423 ORTHO05D006223 7.0e-06 55.1 142 29.6
Mapoly0033s0033 Marchantia polymorpha HOM05D005423 ORTHO05D006223 7.0e-06 55.1 157 29.3


User provided reference genes

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