Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G02691 Aquilegia oxysepala HOM05D003771 ORTHO05D004396 5.7e-311 1070.1 552 100.0
Aqoxy3G04250 Aquilegia oxysepala HOM05D003771 ORTHO05D004396 6.2e-281 970.3 499 99.6
Dinv12623 Davidia involucrata HOM05D003771 ORTHO05D004396 1.9e-258 895.6 499 90.8
TAR383G0820 Trochodendron aralioides HOM05D003771 ORTHO05D004396 1.1e-256 889.8 499 91.2
Nn1g00173 Nelumbo nucifera HOM05D003771 ORTHO05D004396 1.3e-254 882.9 499 90.6
CSS0004980 Camellia sinensis var. sinensis HOM05D003771 ORTHO05D004396 2.2e-254 882.1 500 89.4
CSS0043776 Camellia sinensis var. sinensis HOM05D003771 ORTHO05D004396 2.2e-254 882.1 500 89.4
QL11p007303 Quercus lobata HOM05D003771 ORTHO05D004396 2.5e-253 878.6 499 89.4
CiPaw.15G162500 Carya illinoinensis HOM05D003771 ORTHO05D004396 5.5e-253 877.5 499 89.4
Lj4g0002190 Lotus japonicus HOM05D003771 ORTHO05D004396 7.9e-252 873.6 496 88.7
Actinidia02465 Actinidia chinensis HOM05D003771 ORTHO05D004396 1.0e-251 873.2 501 88.2
Ca_17443_v3 Cicer arietinum L. HOM05D003771 ORTHO05D004396 1.3e-251 872.8 491 88.8
GSVIVG01022289001 Vitis vinifera HOM05D003771 ORTHO05D004396 8.7e-251 870.2 499 88.6
PSO063G0153 Papaver somniferum HOM05D003771 ORTHO05D004396 2.5e-250 868.6 491 89.0
Ciclev10007279m.g Citrus clementina HOM05D003771 ORTHO05D004396 3.3e-250 868.2 505 87.5
Manes.02G223900 Manihot esculenta HOM05D003771 ORTHO05D004396 4.3e-250 867.8 499 89.4
Atru.chr12.1314 Acer truncatum HOM05D003771 ORTHO05D004396 5.7e-250 867.5 499 88.4
TWI34G0561 Tripterygium wilfordii HOM05D003771 ORTHO05D004396 5.7e-250 867.5 499 87.8
Cc06_g23760 Coffea canephora HOM05D003771 ORTHO05D004396 9.7e-250 866.7 499 88.4
Eucgr.E04317 Eucalyptus grandis HOM05D003771 ORTHO05D004396 1.6e-249 865.9 497 88.5
Glyma.08G026700 Glycine max HOM05D003771 ORTHO05D004396 8.2e-249 863.6 499 87.4
Nn3g19428 Nelumbo nucifera HOM05D003771 ORTHO05D004396 8.2e-249 863.6 499 89.2
COL.COLO4_37655 Corchorus olitorius HOM05D003771 ORTHO05D004396 1.1e-248 863.2 499 88.2
DCAR_020453 Daucus carota HOM05D003771 ORTHO05D004396 1.8e-248 862.4 499 87.8
Glyma.05G220300 Glycine max HOM05D003771 ORTHO05D004396 1.8e-248 862.4 499 87.0
Oeu008632.1 Olea europaea HOM05D003771 ORTHO05D004396 2.4e-248 862.1 511 86.5
Potri.018G149400 Populus trichocarpa HOM05D003771 ORTHO05D004396 4.1e-248 861.3 499 88.8
PGR044G2258 Punica granatum HOM05D003771 ORTHO05D004396 5.3e-248 860.9 499 87.2
Nitab4.5_0000019g0010 Nicotiana tabacum HOM05D003771 ORTHO05D004396 6.9e-248 860.5 498 87.1
Psat7g020760 Pisum sativum HOM05D003771 ORTHO05D004396 6.9e-248 860.5 518 84.7
RcHm_v2.0_Chr4g0384941 Rosa chinensis HOM05D003771 ORTHO05D004396 9.0e-248 860.1 499 88.0
MD04G1002300 Malus domestica HOM05D003771 ORTHO05D004396 1.2e-247 859.8 499 88.0
Cpa.g.sc91.64 Carica papaya HOM05D003771 ORTHO05D004396 1.5e-247 859.4 499 87.6
MD15G1427900 Malus domestica HOM05D003771 ORTHO05D004396 3.4e-247 858.2 499 87.4
PSO782G3876 Papaver somniferum HOM05D003771 ORTHO05D004396 4.5e-247 857.8 491 88.2
Prupe.7G042600 Prunus persica HOM05D003771 ORTHO05D004396 7.7e-247 857.1 497 88.1
Thecc.09G205400 Theobroma cacao HOM05D003771 ORTHO05D004396 1.7e-246 855.9 497 88.5
arahy.Tifrunner.gnm1.ann1.TH49EC Arachis hypogaea HOM05D003771 ORTHO05D004396 2.2e-246 855.5 492 87.2
arahy.Tifrunner.gnm1.ann1.XKPK2Z Arachis hypogaea HOM05D003771 ORTHO05D004396 2.2e-246 855.5 492 87.2
FvH4_4g00210 Fragaria vesca HOM05D003771 ORTHO05D004396 3.8e-246 854.7 499 87.4
VMungo0251G3699 Vigna mungo HOM05D003771 ORTHO05D004396 3.8e-246 854.7 493 87.0
CANSAT64G2070 Cannabis sativa HOM05D003771 ORTHO05D004396 6.5e-246 854.0 499 87.6
Phvul.002G302000 Phaseolus vulgaris HOM05D003771 ORTHO05D004396 8.5e-246 853.6 499 86.2
Migut.L01925 Erythranthe guttata HOM05D003771 ORTHO05D004396 1.9e-245 852.4 510 85.7
Medtr8g100105 Medicago truncatula HOM05D003771 ORTHO05D004396 3.2e-245 851.7 500 86.4
FAN22G1465 Fragaria x ananassa HOM05D003771 ORTHO05D004396 5.5e-245 850.9 499 87.2
CAN.G587.52 Capsicum annuum HOM05D003771 ORTHO05D004396 7.2e-245 850.5 498 86.3
Sc06g0002410 Simmondsia chinensis HOM05D003771 ORTHO05D004396 9.4e-245 850.1 500 86.0
CsaV3_4G031470 Cucumis sativus L. HOM05D003771 ORTHO05D004396 1.6e-244 849.4 499 86.6
MELO3C009070.2 Cucumis melo HOM05D003771 ORTHO05D004396 2.7e-244 848.6 499 86.6
HanXRQChr02g0040541 Helianthus annuus HOM05D003771 ORTHO05D004396 2.7e-244 848.6 497 85.1
Rhsim01G0106700 Rhododendron simsii HOM05D003771 ORTHO05D004396 7.9e-244 847.0 526 83.7
FAN17G2138 Fragaria x ananassa HOM05D003771 ORTHO05D004396 1.4e-243 846.3 499 86.6
Gohir.D05G000400 Gossypium hirsutum HOM05D003771 ORTHO05D004396 1.4e-243 846.3 499 87.6
Gorai.009G000200 Gossypium raimondii HOM05D003771 ORTHO05D004396 1.4e-243 846.3 499 87.6
SalBow5G2520 Salvia bowleyana HOM05D003771 ORTHO05D004396 2.3e-243 845.5 534 82.8
Duzib168G1435 Durio zibethinus HOM05D003771 ORTHO05D004396 3.0e-243 845.1 499 87.2
ECA233G1083 Erigeron canadensis HOM05D003771 ORTHO05D004396 5.1e-243 844.3 497 84.9
Lalb_Chr05g0223831 Lupinus albus HOM05D003771 ORTHO05D004396 6.7e-243 844.0 501 85.8
Sopen05g020060 Solanum pennellii HOM05D003771 ORTHO05D004396 1.5e-242 842.8 498 85.3
ClCG04G000570 Citrullus lanatus HOM05D003771 ORTHO05D004396 3.3e-242 841.6 499 85.8
Sed0018603 Sechium edule HOM05D003771 ORTHO05D004396 4.3e-242 841.3 499 85.0
SGA_v2.0_scaffold21G09599 Striga asiatica HOM05D003771 ORTHO05D004396 5.7e-242 840.9 511 85.3
Gohir.A05G000200 Gossypium hirsutum HOM05D003771 ORTHO05D004396 7.4e-242 840.5 499 87.2
MSTRG.26513 Avicennia marina HOM05D003771 ORTHO05D004396 9.7e-242 840.1 510 84.5
Peaxi162Scf00322g01517 Petunia axillaris HOM05D003771 ORTHO05D004396 3.7e-241 838.2 498 85.7
Sabra18G0126200 Salix brachista HOM05D003771 ORTHO05D004396 1.8e-240 835.9 546 80.8
EL10Ac4g08749 Beta vulgaris HOM05D003771 ORTHO05D004396 6.9e-240 833.9 505 84.2
Lsat_1_v5_gn_1_6680 Lactuca sativa HOM05D003771 ORTHO05D004396 9.1e-240 833.6 498 84.3
Ah.04g162600 Amaranthus hybridus HOM05D003771 ORTHO05D004396 2.9e-238 828.6 505 83.0
Hund03218 Selenicereus undatus HOM05D003771 ORTHO05D004396 3.2e-237 825.1 499 84.0
ATR0626G390 Amborella trichopoda HOM05D003771 ORTHO05D004396 1.6e-236 822.8 505 84.0
HPP92_018040 Vanilla planifolia HOM05D003771 ORTHO05D004396 3.6e-236 821.6 497 84.1
THA.LOC104808936 Tarenaya hassleriana HOM05D003771 ORTHO05D004396 7.9e-236 820.5 489 85.7
Lj5A798G49 Lonicera japonica HOM05D003771 ORTHO05D004396 2.3e-235 818.9 500 83.8
Sp6g13880 Schrenkiella parvula HOM05D003771 ORTHO05D004396 2.0e-234 815.8 501 83.4
Aa31sc328G10 Aethionema arabicum HOM05D003771 ORTHO05D004396 9.7e-234 813.5 502 83.7
BcaC04g20648 Brassica carinata HOM05D003771 ORTHO05D004396 1.7e-233 812.8 502 82.7
BraA03t10897Z Brassica rapa HOM05D003771 ORTHO05D004396 2.2e-233 812.4 501 82.6
A03p16060 Brassica napus HOM05D003771 ORTHO05D004396 2.8e-233 812.0 501 82.6
C09p41070 Brassica napus HOM05D003771 ORTHO05D004396 3.7e-233 811.6 502 82.5
Carub.0013s0005 Capsella rubella HOM05D003771 ORTHO05D004396 3.7e-233 811.6 501 83.2
Thhalv10012482m.g Eutrema salsugineum HOM05D003771 ORTHO05D004396 3.7e-233 811.6 502 82.9
BcaB08g35516 Brassica carinata HOM05D003771 ORTHO05D004396 4.8e-233 811.2 501 82.4
A10p09550 Brassica napus HOM05D003771 ORTHO05D004396 4.8e-233 811.2 502 82.5
BcaB01g04159 Brassica carinata HOM05D003771 ORTHO05D004396 8.2e-233 810.4 501 82.6
AL3G44140 Arabidopsis lyrata HOM05D003771 ORTHO05D004396 1.8e-232 809.3 501 82.8
BcaC01g06134 Brassica carinata HOM05D003771 ORTHO05D004396 2.4e-232 808.9 495 83.2
C03p18900 Brassica napus HOM05D003771 ORTHO05D004396 2.4e-232 808.9 495 83.2
BolC3t14282H Brassica oleracea HOM05D003771 ORTHO05D004396 2.4e-232 808.9 495 83.2
AUR62014286 Chenopodium quinoa HOM05D003771 ORTHO05D004396 4.1e-232 808.1 586 73.2
AT2G07360 Arabidopsis thaliana HOM05D003771 ORTHO05D004396 4.5e-231 804.7 501 82.2
CARHR104050 Cardamine hirsuta HOM05D003771 ORTHO05D004396 2.9e-230 802.0 501 82.0
Os03g0265700 Oryza sativa ssp. japonica HOM05D003771 ORTHO05D004396 8.5e-230 800.4 509 80.4
Zm00001eb011800 Zea mays HOM05D003771 ORTHO05D004396 1.9e-229 799.3 509 80.2
Lju50C19G3 Lonicera japonica HOM05D003771 ORTHO05D004396 1.3e-225 786.6 513 80.1
Hund19352 Selenicereus undatus HOM05D003771 ORTHO05D004396 1.8e-224 782.7 500 80.2
SEGI_40037 Sequoiadendron giganteum HOM05D003771 ORTHO05D004396 7.7e-223 777.3 495 80.6
unitig_899.g15422 Utricularia gibba HOM05D003771 ORTHO05D004396 7.2e-221 770.8 509 79.4
Nitab4.5_0006114g0010 Nicotiana tabacum HOM05D003771 ORTHO05D004396 1.0e-219 766.9 447 86.6
Lsat_1_v5_gn_8_69981 Lactuca sativa HOM05D003771 ORTHO05D004396 1.8e-211 739.6 494 77.7
vmacro20748 Vaccinium macrocarpon HOM05D003771 ORTHO05D004396 1.4e-208 729.9 430 87.0
AUR62034148 Chenopodium quinoa HOM05D003771 ORTHO05D004396 8.6e-206 720.7 505 75.8
Haze_19080 Corylus avellana HOM05D003771 ORTHO05D004396 7.0e-200 701.0 475 77.1
SMO367G0435 Selaginella moellendorffii HOM05D003771 ORTHO05D004396 4.9e-193 678.3 508 70.1
TPR.G25458 Trifolium pratense HOM05D003771 ORTHO05D004396 1.6e-180 636.7 350 90.3
Mapoly0015s0202 Marchantia polymorpha HOM05D003771 ORTHO05D004396 9.9e-178 627.5 516 64.5
Pp3c15_18470 Physcomitrium patens HOM05D003771 ORTHO05D004396 1.6e-172 610.1 452 69.2
AagrBONN_evm.TU.Sc2ySwM_228.3008 Anthoceros agrestis HOM05D003771 ORTHO05D004396 2.2e-169 599.7 451 67.2
HanXRQChr05g0138111 Helianthus annuus HOM05D003771 ORTHO05D004396 5.8e-154 548.5 369 75.9
CDE07G1201 Ceratophyllum demersum HOM05D003771 ORTHO05D004396 1.9e-144 516.9 298 87.9
FAN12G3555 Fragaria x ananassa HOM05D003771 ORTHO05D004396 3.1e-131 473.0 295 81.7
AagrBONN_evm.TU.Sc2ySwM_369.331 Anthoceros agrestis HOM05D003771 ORTHO05D004396 2.2e-124 450.3 301 73.8
AagrBONN_evm.TU.Sc2ySwM_228.2998 Anthoceros agrestis HOM05D003771 ORTHO05D004396 1.6e-119 434.1 294 73.1
FAN12G2055 Fragaria x ananassa HOM05D003771 ORTHO05D004396 3.8e-105 386.3 206 94.2
RcHm_v2.0_Chr4g0384821 Rosa chinensis HOM05D003771 ORTHO05D004396 5.0e-105 386.0 217 88.0
Zm00001eb307240 Zea mays HOM05D003771 ORTHO05D004396 3.0e-94 350.1 202 85.1
TPR.G14800 Trifolium pratense HOM05D003771 ORTHO05D004396 1.1e-70 271.9 166 83.7
RcHm_v2.0_Chr4g0384831 Rosa chinensis HOM05D003771 ORTHO05D004396 1.9e-64 251.1 164 81.1
Zm00001eb154330 Zea mays HOM05D003771 ORTHO05D004396 4.7e-63 246.5 142 88.0
CBR_g10825 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-62 245.4 396 40.2
PSO782G3302 Papaver somniferum HOM05D003771 ORTHO05D004396 1.5e-53 214.9 156 72.4
arahy.Tifrunner.gnm1.ann1.523GVR Arachis hypogaea HOM05D003771 ORTHO05D004396 1.1e-51 208.8 122 81.1
arahy.Tifrunner.gnm1.ann1.Q9DYE1 Arachis hypogaea HOM05D003771 ORTHO05D004396 2.1e-50 204.5 117 81.2
MD07G1055300 Malus domestica HOM05D003771 ORTHO05D004396 1.5e-48 198.4 236 52.5
COL.COLO4_38524 Corchorus olitorius HOM05D003771 ORTHO05D004396 1.9e-40 171.4 112 79.5
CDE07G0913 Ceratophyllum demersum HOM05D003771 ORTHO05D004396 2.2e-36 157.9 94 85.1
Haze_19082 Corylus avellana HOM05D003771 ORTHO05D004396 6.4e-36 156.4 91 87.9
arahy.Tifrunner.gnm1.ann1.F6FNE6 Arachis hypogaea HOM05D003771 ORTHO05D004396 1.3e-33 148.7 90 77.8
Psat0s1568g0040 Pisum sativum HOM05D003771 ORTHO05D004396 6.7e-33 146.4 90 83.3
HanXRQChr05g0138991 Helianthus annuus HOM05D003771 ORTHO05D004396 7.4e-32 142.9 83 83.1
vmacro20749 Vaccinium macrocarpon HOM05D003771 ORTHO05D004396 3.1e-30 137.5 89 79.8
Lsat_1_v5_gn_5_155680 Lactuca sativa HOM05D003771 ORTHO05D004396 1.0e-28 132.5 178 48.3
TAR636G2791 Trochodendron aralioides HOM05D000880 ORTHO05D004760 3.5e-26 124.0 72 88.9
MCO15G147 Micromonas commoda HOM05D003771 ORTHO05D004396 1.8e-22 111.7 244 32.0
Psat6g005640 Pisum sativum HOM05D003771 ORTHO05D004396 2.1e-18 98.2 60 78.3
Psat3g071280 Pisum sativum HOM05D000062 ORTHO05D004396 2.7e-18 97.8 91 60.4
Psat0ss6263g0280 Pisum sativum HOM05D041104 ORTHO05D004396 1.8e-17 95.1 89 60.7
Psat5g077000 Pisum sativum HOM05D000062 ORTHO05D004396 1.9e-16 91.7 91 57.1
MD07G1055200 Malus domestica HOM05D003771 ORTHO05D004396 5.7e-16 90.1 61 77.0
Cre08.g384864 Chlamydomonas reinhardtii HOM05D003771 ORTHO05D004396 2.2e-15 88.2 166 34.3
MD07G1055500 Malus domestica HOM05D003771 ORTHO05D004396 3.1e-14 84.3 49 81.6
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 4.1e-14 84.0 80 53.8
MD07G1055400 Malus domestica HOM05D003771 ORTHO05D004396 3.8e-12 77.4 41 95.1
AagrBONN_evm.TU.Sc2ySwM_228.2999 Anthoceros agrestis HOM05D003771 ORTHO05D004396 1.6e-10 72.0 103 42.7
AagrBONN_evm.TU.Sc2ySwM_369.332 Anthoceros agrestis HOM05D003771 ORTHO05D004396 1.6e-10 72.0 103 42.7
arahy.Tifrunner.gnm1.ann1.ACA5RJ Arachis hypogaea HOM05D003771 ORTHO05D004396 3.6e-10 70.9 116 39.7
Lsat_1_v5_gn_4_142760 Lactuca sativa HOM05D003771 ORTHO05D012343 1.8e-09 68.6 75 53.3
Psat2g096160 Pisum sativum HOM05D000041 ORTHO05D000061 1.8e-06 58.5 40 75.0
Psat2g096240 Pisum sativum HOM05D000041 ORTHO05D000061 1.8e-06 58.5 40 75.0


User provided reference genes

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