Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G02627 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 1.1e-42 176.0 79 100.0
Aqoxy3G03864 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 2.1e-28 128.6 72 80.6
CANSAT64G1327 Cannabis sativa HOM05D004290 ORTHO05D005025 9.0e-24 113.2 71 64.8
Nn4g23673 Nelumbo nucifera HOM05D004290 ORTHO05D005025 1.5e-23 112.5 71 63.4
QL03p037189 Quercus lobata HOM05D004290 ORTHO05D005025 2.0e-23 112.1 72 62.5
Thecc.02G363400 Theobroma cacao HOM05D004290 ORTHO05D005025 2.6e-23 111.7 71 64.8
Haze_11793 Corylus avellana HOM05D004290 ORTHO05D005025 5.8e-23 110.5 72 63.9
Duzib251G0274 Durio zibethinus HOM05D004290 ORTHO05D005025 1.3e-22 109.4 71 63.4
QL03p036408 Quercus lobata HOM05D004290 ORTHO05D005025 1.3e-22 109.4 72 61.1
Cfa008781 Carpinus fangiana HOM05D004290 ORTHO05D005025 1.7e-22 109.0 71 64.8
Ciclev10033020m.g Citrus clementina HOM05D004290 ORTHO05D005025 1.7e-22 109.0 71 63.4
CiPaw.05G172800 Carya illinoinensis HOM05D004290 ORTHO05D005025 2.2e-22 108.6 71 63.4
CiPaw.05G172700 Carya illinoinensis HOM05D004290 ORTHO05D005025 2.9e-22 108.2 71 63.4
EL10Ac6g14527 Beta vulgaris HOM05D004290 ORTHO05D005025 6.4e-22 107.1 72 59.7
ClCG01G005800 Citrullus lanatus HOM05D004290 ORTHO05D005025 6.4e-22 107.1 71 62.0
RcHm_v2.0_Chr4g0436191 Rosa chinensis HOM05D004290 ORTHO05D005025 8.4e-22 106.7 71 60.6
FvH4_4g28340 Fragaria vesca HOM05D004290 ORTHO05D005025 1.1e-21 106.3 71 60.6
FAN12G2228 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.1e-21 106.3 71 60.6
FAN22G0640 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.1e-21 106.3 71 60.6
Aa31sc79G10 Aethionema arabicum HOM05D004290 ORTHO05D005025 1.4e-21 105.9 72 61.1
MD13G1049100 Malus domestica HOM05D004290 ORTHO05D005025 1.9e-21 105.5 72 61.1
Manes.06G074500 Manihot esculenta HOM05D004290 ORTHO05D005025 2.4e-21 105.1 71 62.0
Potri.008G114300 Populus trichocarpa HOM05D004290 ORTHO05D005025 5.4e-21 104.0 72 59.7
Hund05546 Selenicereus undatus HOM05D004290 ORTHO05D005025 7.1e-21 103.6 72 58.3
FAN17G1675 Fragaria x ananassa HOM05D004290 ORTHO05D005025 9.3e-21 103.2 71 59.2
MELO3C012202.2 Cucumis melo HOM05D004290 ORTHO05D005025 1.6e-20 102.4 71 54.9
Sabra08G0086600 Salix brachista HOM05D004290 ORTHO05D005025 1.6e-20 102.4 71 60.6
AUR62002942 Chenopodium quinoa HOM05D004290 ORTHO05D005025 2.7e-20 101.7 72 56.9
ClCG00G001430 Citrullus lanatus HOM05D004290 ORTHO05D005025 3.5e-20 101.3 71 54.9
ClCG05G023160 Citrullus lanatus HOM05D004290 ORTHO05D005025 3.5e-20 101.3 71 54.9
Ah.02g127350 Amaranthus hybridus HOM05D004290 ORTHO05D005025 6.0e-20 100.5 72 55.6
A02p15320 Brassica napus HOM05D004290 ORTHO05D005025 6.0e-20 100.5 72 55.6
C02p25170 Brassica napus HOM05D004290 ORTHO05D005025 6.0e-20 100.5 72 55.6
BraA02t06593Z Brassica rapa HOM05D004290 ORTHO05D005025 6.0e-20 100.5 72 55.6
CsaV3_5G033840 Cucumis sativus L. HOM05D004290 ORTHO05D005025 6.0e-20 100.5 71 54.9
AUR62007751 Chenopodium quinoa HOM05D004290 ORTHO05D005025 7.8e-20 100.1 72 55.6
RcHm_v2.0_Chr4g0436181 Rosa chinensis HOM05D004290 ORTHO05D005025 7.8e-20 100.1 72 55.6
Sed0009817 Sechium edule HOM05D004290 ORTHO05D005025 7.8e-20 100.1 71 54.9
Thhalv10019297m.g Eutrema salsugineum HOM05D004290 ORTHO05D005025 1.0e-19 99.8 72 56.9
COL.COLO4_07852 Corchorus olitorius HOM05D004290 ORTHO05D005025 1.3e-19 99.4 64 62.5
QL03p036461 Quercus lobata HOM05D004290 ORTHO05D005025 1.3e-19 99.4 72 55.6
BcaB05g24409 Brassica carinata HOM05D004290 ORTHO05D005025 1.7e-19 99.0 72 55.6
FvH4_4g28310 Fragaria vesca HOM05D004290 ORTHO05D005025 1.7e-19 99.0 72 54.2
FAN12G0523 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.7e-19 99.0 72 54.2
THA.LOC104821971 Tarenaya hassleriana HOM05D004290 ORTHO05D005025 2.3e-19 98.6 72 51.4
RcHm_v2.0_Chr2g0142071 Rosa chinensis HOM05D004290 ORTHO05D005025 3.0e-19 98.2 72 54.2
RcHm_v2.0_Chr2g0142081 Rosa chinensis HOM05D004290 ORTHO05D005025 3.0e-19 98.2 72 54.2
RcHm_v2.0_Chr2g0142111 Rosa chinensis HOM05D004290 ORTHO05D005025 3.0e-19 98.2 72 54.2
RcHm_v2.0_Chr2g0142121 Rosa chinensis HOM05D004290 ORTHO05D005025 3.0e-19 98.2 72 54.2
MELO3C005349.2 Cucumis melo HOM05D004290 ORTHO05D005025 3.9e-19 97.8 71 57.7
MBI10_g35795_MAGBIO Magnolia biondii HOM05D004290 ORTHO05D005025 3.9e-19 97.8 70 50.0
BcaC03g14984 Brassica carinata HOM05D004290 ORTHO05D005025 5.1e-19 97.4 72 54.2
BolC2t08596H Brassica oleracea HOM05D004290 ORTHO05D005025 5.1e-19 97.4 72 54.2
Gohir.A13G071200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 5.1e-19 97.4 71 53.5
Prupe.1G302800 Prunus persica HOM05D004290 ORTHO05D005025 5.1e-19 97.4 73 57.5
Sed0004732 Sechium edule HOM05D004290 ORTHO05D005025 5.1e-19 97.4 71 57.7
CARHR061580 Cardamine hirsuta HOM05D004290 ORTHO05D005025 6.6e-19 97.1 72 52.8
TWI31G0716 Tripterygium wilfordii HOM05D004290 ORTHO05D005025 6.6e-19 97.1 75 60.0
ATR1147G043 Amborella trichopoda HOM05D004290 ORTHO05D005025 8.7e-19 96.7 71 56.3
Lj3A1022T62 Lonicera japonica HOM05D004290 ORTHO05D005025 8.7e-19 96.7 71 57.7
PSO478G2631 Papaver somniferum HOM05D004290 ORTHO05D005025 8.7e-19 96.7 77 54.5
Sp5g23870 Schrenkiella parvula HOM05D004290 ORTHO05D005025 8.7e-19 96.7 72 54.2
Sc04g0006830 Simmondsia chinensis HOM05D004290 ORTHO05D005025 8.7e-19 96.7 72 55.6
C04p37630 Brassica napus HOM05D004290 ORTHO05D005025 1.1e-18 96.3 72 54.2
Eucgr.B03066 Eucalyptus grandis HOM05D004290 ORTHO05D005025 1.5e-18 95.9 72 54.2
FvH4_6g24180 Fragaria vesca HOM05D004290 ORTHO05D005025 1.5e-18 95.9 71 56.3
FAN14G4265 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.5e-18 95.9 71 56.3
MD13G1048900 Malus domestica HOM05D004290 ORTHO05D005025 1.9e-18 95.5 73 53.4
AT1G68760 Arabidopsis thaliana HOM05D004290 ORTHO05D005025 2.5e-18 95.1 72 51.4
CsaV3_5G028890 Cucumis sativus L. HOM05D004290 ORTHO05D005025 2.5e-18 95.1 71 54.9
Dinv16527 Davidia involucrata HOM05D004290 ORTHO05D005025 2.5e-18 95.1 66 59.1
Potri.008G114400 Populus trichocarpa HOM05D004290 ORTHO05D005025 4.3e-18 94.4 72 52.8
Gohir.D13G069200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 7.3e-18 93.6 71 50.7
Gorai.013G079300 Gossypium raimondii HOM05D004290 ORTHO05D005025 7.3e-18 93.6 71 50.7
HanXRQChr08g0214461 Helianthus annuus HOM05D004290 ORTHO05D005025 7.3e-18 93.6 71 52.1
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 1.6e-17 92.4 69 56.5
Prupe.1G303000 Prunus persica HOM05D004290 ORTHO05D005025 1.6e-17 92.4 72 56.9
PGR102G2310 Punica granatum HOM05D004290 ORTHO05D005025 1.6e-17 92.4 72 55.6
FAN09G0247 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.1e-17 92.0 71 53.5
Cc11_g10800 Coffea canephora HOM05D004290 ORTHO05D005025 2.8e-17 91.7 71 53.5
GSVIVG01011978001 Vitis vinifera HOM05D004290 ORTHO05D005025 2.8e-17 91.7 71 56.3
ClCG05G023170 Citrullus lanatus HOM05D004290 ORTHO05D005025 4.8e-17 90.9 64 53.1
Dinv05808 Davidia involucrata HOM05D000436 ORTHO05D005025 4.8e-17 90.9 64 57.8
Aqoxy3G03865 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 6.2e-17 90.5 71 49.3
arahy.Tifrunner.gnm1.ann1.IBNT6Z Arachis hypogaea HOM05D004290 ORTHO05D005025 6.2e-17 90.5 74 52.7
arahy.Tifrunner.gnm1.ann1.U655LF Arachis hypogaea HOM05D004290 ORTHO05D005025 6.2e-17 90.5 74 52.7
SalBow8G1203 Salvia bowleyana HOM05D004290 ORTHO05D005025 6.2e-17 90.5 79 50.6
RcHm_v2.0_Chr6g0244161 Rosa chinensis HOM05D004290 ORTHO05D005025 8.1e-17 90.1 71 54.9
Cc11_g10790 Coffea canephora HOM05D004290 ORTHO05D005025 1.1e-16 89.7 74 51.4
AL2G27690 Arabidopsis lyrata HOM05D004290 ORTHO05D005025 1.4e-16 89.4 72 48.6
SalBow8G5193 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.4e-16 89.4 71 52.1
FAN09G2488 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.4e-16 88.6 72 54.2
MD16G1050200 Malus domestica HOM05D004290 ORTHO05D005025 2.4e-16 88.6 73 53.4
FAN07G1902 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.1e-16 88.2 71 56.3
Lj2g0025619 Lotus japonicus HOM05D004290 ORTHO05D005025 4.0e-16 87.8 73 50.7
Migut.L01112 Erythranthe guttata HOM05D004290 ORTHO05D005025 5.3e-16 87.4 71 52.1
Glyma.01G090900 Glycine max HOM05D004290 ORTHO05D005025 6.9e-16 87.0 74 54.1
Nitab4.5_0001178g0080 Nicotiana tabacum HOM05D004290 ORTHO05D005025 9.0e-16 86.7 71 52.1
Nitab4.5_0013408g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 9.0e-16 86.7 71 53.5
FAN22G2200 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.5e-15 85.9 69 55.1
FvH4_4g28300 Fragaria vesca HOM05D004290 ORTHO05D005025 2.0e-15 85.5 71 54.9
FAN12G2396 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.0e-15 85.5 71 54.9
Medtr5g062660 Medicago truncatula HOM05D004290 ORTHO05D005025 2.0e-15 85.5 72 51.4
Phvul.003G024900 Phaseolus vulgaris HOM05D004290 ORTHO05D005025 2.0e-15 85.5 67 55.2
Psat2g074600 Pisum sativum HOM05D004290 ORTHO05D005025 2.0e-15 85.5 72 50.0
RcHm_v2.0_Chr4g0436151 Rosa chinensis HOM05D004290 ORTHO05D005025 2.0e-15 85.5 71 54.9
Carub.0002s1532 Capsella rubella HOM05D004290 ORTHO05D005025 2.6e-15 85.1 72 47.2
Ca_19617_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 2.6e-15 85.1 72 52.8
Ca_30768_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 2.6e-15 85.1 72 52.8
HanXRQChr16g0528801 Helianthus annuus HOM05D004290 ORTHO05D005025 3.4e-15 84.7 72 44.4
ECA233G1907 Erigeron canadensis HOM05D004290 ORTHO05D005025 4.5e-15 84.3 71 45.1
HanXRQChr16g0528791 Helianthus annuus HOM05D004290 ORTHO05D005025 5.8e-15 84.0 72 47.2
Peaxi162Scf00367g00519 Petunia axillaris HOM05D004290 ORTHO05D005025 5.8e-15 84.0 71 52.1
Lsat_1_v5_gn_8_37520 Lactuca sativa HOM05D004290 ORTHO05D005025 7.6e-15 83.6 71 47.9
MSTRG.7697 Avicennia marina HOM05D004290 ORTHO05D005025 9.9e-15 83.2 71 46.5
TPR.G33571 Trifolium pratense HOM05D004290 ORTHO05D005025 9.9e-15 83.2 73 52.1
Peaxi162Scf00118g01310 Petunia axillaris HOM05D004290 ORTHO05D005025 1.3e-14 82.8 75 45.3
MD16G1050100 Malus domestica HOM05D004290 ORTHO05D005025 1.7e-14 82.4 72 47.2
Prupe.1G302900 Prunus persica HOM05D004290 ORTHO05D005025 1.7e-14 82.4 73 49.3
Oeu018290.1 Olea europaea HOM05D004290 ORTHO05D005025 2.9e-14 81.6 50 66.0
Sopen05g005830 Solanum pennellii HOM05D004290 ORTHO05D005025 3.8e-14 81.3 71 49.3
Solyc05g010015.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 4.9e-14 80.9 71 50.7
ECA234G2024 Erigeron canadensis HOM05D004290 ORTHO05D005025 1.1e-13 79.7 72 44.4
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 1.4e-13 79.3 77 46.8
SGA_v2.0_scaffold14G06802 Striga asiatica HOM05D004290 ORTHO05D005025 1.9e-13 79.0 72 48.6
DCAR_023699 Daucus carota HOM05D004290 ORTHO05D005025 2.4e-13 78.6 71 43.7
PGSC0003DMG400030259 Solanum tuberosum HOM05D004290 ORTHO05D005025 2.4e-13 78.6 77 46.8
ATR1147G035 Amborella trichopoda HOM05D004290 ORTHO05D005025 3.2e-13 78.2 61 50.8
DCAR_026707 Daucus carota HOM05D004290 ORTHO05D005025 3.2e-13 78.2 74 44.6
Pp3c20_17780 Physcomitrium patens HOM05D004290 ORTHO05D005025 3.2e-13 78.2 68 42.6
Oeu044394.1 Olea europaea HOM05D004290 ORTHO05D005025 4.2e-13 77.8 71 50.7
AagrBONN_evm.TU.Sc2ySwM_344.2294 Anthoceros agrestis HOM05D004290 ORTHO05D005025 1.2e-12 76.3 70 40.0
DCAR_017507 Daucus carota HOM05D004290 ORTHO05D005025 1.2e-12 76.3 71 43.7
DCAR_026708 Daucus carota HOM05D004290 ORTHO05D005025 1.2e-12 76.3 71 43.7
Lsat_1_v5_gn_4_17281 Lactuca sativa HOM05D004290 ORTHO05D005025 1.6e-12 75.9 69 46.4
TAR629G2250 Trochodendron aralioides HOM05D004290 ORTHO05D005025 1.6e-12 75.9 41 75.6
unitig_744.g24286 Utricularia gibba HOM05D004290 ORTHO05D005025 2.7e-12 75.1 72 50.0
MSTRG.13496 Avicennia marina HOM05D004290 ORTHO05D005025 3.5e-12 74.7 68 45.6
CSS0026618 Camellia sinensis var. sinensis HOM05D004290 ORTHO05D005025 6.0e-12 73.9 76 47.4
Mapoly0059s0094 Marchantia polymorpha HOM05D004290 ORTHO05D005025 6.0e-12 73.9 70 37.1
HPP92_021836 Vanilla planifolia HOM05D004290 ORTHO05D005025 6.0e-12 73.9 72 45.8
Prupe.1G300800 Prunus persica HOM05D004290 ORTHO05D005025 7.9e-12 73.6 69 46.4
Prupe.1G303100 Prunus persica HOM05D004290 ORTHO05D005025 1.0e-11 73.2 68 47.1
SGA_v2.0_scaffold14G06801 Striga asiatica HOM05D004290 ORTHO05D005025 1.0e-11 73.2 72 43.1
Lalb_Chr04g0255051 Lupinus albus HOM05D004290 ORTHO05D005025 2.3e-11 72.0 70 48.6
RcHm_v2.0_Chr2g0142051 Rosa chinensis HOM05D004290 ORTHO05D005025 5.1e-11 70.9 50 56.0
CBR_g26184 Chara braunii HOM05D004290 ORTHO05D005025 4.3e-10 67.8 69 37.7
CDE10G0275 Ceratophyllum demersum HOM05D004290 ORTHO05D005025 7.4e-10 67.0 57 49.1
SalBow8G2020 Salvia bowleyana HOM05D004290 ORTHO05D005025 9.6e-10 66.6 72 43.1
FAN12G1909 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.6e-09 65.9 41 65.9
SalBow8G3034 Salvia bowleyana HOM05D004290 ORTHO05D005025 3.7e-09 64.7 70 40.0
FvH4_4g28280 Fragaria vesca HOM05D004290 ORTHO05D005025 1.8e-08 62.4 44 59.1
Peaxi162Scf00367g00520 Petunia axillaris HOM05D004290 ORTHO05D005025 2.4e-08 62.0 40 62.5
Actinidia14836 Actinidia chinensis HOM05D000436 ORTHO05D000678 3.1e-08 61.6 48 52.1
Nitab4.5_0005210g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 4.0e-08 61.2 54 46.3
Sopen03g007670 Solanum pennellii HOM05D004290 ORTHO05D005025 2.0e-07 58.9 77 37.7


User provided reference genes

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